Personal information

Emails & domains

Verified email domains

Websites & social links

Google scholar
The Jackson Laboratory - work

Other IDs

Scopus Author ID: 56519165100

Keywords

NGS, PhIP-Seq, RNA-Seq, HPC computing, Machine learning, T1D, PID, protein structue, topology, multi scale molecular dynamics, Python,, Database,, web development

Countries

Qatar, Belgium, India, United States

Activities

Collapse all

Employment (4)

Jackson Laboratory - Farmington: Farmington, CT, US

2022-11-07 to present | Associate Computational Scientist (computer sciences)
Employment
Source: Self-asserted source
taushif khan

Sidra Medical and Research Center: Doha, Ad Dawhah, QA

2019-03-04 to present | Post-Doctoral Fellow (Systems Biology and Immunology)
Employment
Source: Self-asserted source
taushif khan

IB-Square: Brussels, BE

2016-06-01 to 2019-03-01 | Post Doc (SMB; VUB)
Employment
Source: Self-asserted source
taushif khan

Jawaharlal Nehru University: New Delhi, Delhi, IN

2016-02-02 to 2016-05-31 | Research Assistance (SCIS)
Employment
Source: Self-asserted source
taushif khan

Education and qualifications (2)

Jawaharlal Nehru University: New Delhi, Delhi, IN

2010-07-04 to 2015-07-23 | PhD (School of Computational & Integrative Sciences)
Education
Source: Self-asserted source
taushif khan

Gandhi Institute of Engineering and Technology: Gunupur, Orissa, IN

2004-08-05 to 2008-06-06 | Student (Department of Biotechnology)
Qualification
Source: Self-asserted source
taushif khan

Works (41)

Deep functional profiling of gene sets using Large Language Models: A blueprint for tailored, context-aware functional annotation

2024-12-19 | Preprint
DOI: 10.1101/2024.12.12.628275
Contributors: Taushif Khan; Marina Yurieva; Basirudeen Syed Ahamed Kabeer; Mohammed Toufiq; Darawan Rinchai; Karolina Palucka; Damien Chaussabel
Source: check_circle
Crossref

Initial TCR Signal Strength Imprints GATA3 and Tbet Expression Driving T-helper Cell Fate Decisions

2024-07-22 | Preprint
DOI: 10.1101/2024.07.18.604067
Contributors: Mohammad Ameen Al-Aghbar; Taushif Khan; Meritxell Espino Guarch; Douglas C Palmer; Nicholas van Panhuys
Source: check_circle
Crossref

Data from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.c.7311427
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Data from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.c.7311427.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S1 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144884
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S1 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144884.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S2 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144881
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S2 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144881.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S3 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144878.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S3 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144878
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S4 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144875.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S4 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144875
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S5 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144872
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S5 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144872.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S6 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144869.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S6 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144869
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S7 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144866.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S7 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144866
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S8 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144863
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Figure S8 from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144863.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

Cancer Immunology Research
2024-07-02 | Journal article
DOI: 10.1158/2326-6066.CIR-23-0851
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Supplementary Tables from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144860.v1
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

Supplementary Tables from IL3-Driven T Cell–Basophil Crosstalk Enhances Antitumor Immunity

2024-07-02 | Preprint
DOI: 10.1158/2326-6066.26144860
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; Taushif Khan; Natalie A. Logan; John J. Wilson; John D. Sears; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

IL-3-driven T cell-basophil crosstalk enhances anti-tumor immunity

2024-02-02 | Preprint
DOI: 10.1101/2024.02.01.578302
Contributors: Jian Wei; Colleen L. Mayberry; Xiaoting Lv; Fangyan Hu; John D. Sears; Taushif Khan; Natalie A. Logan; John J. Wilson; Damien Chaussabel; Chih-Hao Chang
Source: check_circle
Crossref

New simulation insights on the structural transition mechanism of bovine rhodopsin activation

Proteins: Structure, Function, and Bioinformatics
2023-06 | Journal article
DOI: 10.1002/prot.26465
Contributors: Kamalesh Damodaran; Taushif Khan; David Bickel; Sreeshma Jaya; Wim F. Vranken; Chinnappan Sudandiradoss
Source: check_circle
Crossref

Inherited human ITK deficiency impairs IFN-γ immunity and underlies tuberculosis

Journal of Experimental Medicine
2023-01-02 | Journal article
DOI: 10.1084/jem.20220484
Contributors: Masato Ogishi; Rui Yang; Rémy Rodriguez; Dominic P. Golec; Emmanuel Martin; Quentin Philippot; Jonathan Bohlen; Simon J. Pelham; Andrés Augusto Arias; Taushif Khan et al.
Source: check_circle
Crossref

Genetic, Immunological, and Clinical Features of 32 Patients with Autosomal Recessive STAT1 Deficiency

The Journal of Immunology
2021-07-01 | Journal article
DOI: 10.4049/jimmunol.2001451
Contributors: Tom Le Voyer; Sonoko Sakata; Miyuki Tsumura; Taushif Khan; Ana Esteve-Sole; Bandar K Al-Saud; Hatice Eke Gungor; Prasad Taur; Valentine Jeanne-Julien; Mette Christiansen et al.
Source: check_circle
Crossref

Inherited deficiency of stress granule ZNFX1 in patients with monocytosis and mycobacterial disease

Proceedings of the National Academy of Sciences
2021-04-13 | Journal article
DOI: 10.1073/pnas.2102804118
Contributors: Tom Le Voyer; Anna-Lena Neehus; Rui Yang; Masato Ogishi; Jérémie Rosain; Fayhan Alroqi; Maha Alshalan; Sophie Blumental; Fatima Al Ali; Taushif Khan et al.
Source: check_circle
Crossref

Distinct antibody repertoires against endemic human coronaviruses in children and adults

JCI Insight
2021-01-26 | Journal article
DOI: 10.1172/jci.insight.144499
Contributors: Taushif Khan; Mahbuba Rahman; Fatima Al Ali; Susie S.Y. Huang; Manar Ata; Qian Zhang; Paul Bastard; Zhiyong Liu; Emmanuelle Jouanguy; Vivien Beziat et al.
Source: check_circle
Crossref

Herpes simplex encephalitis in a patient with a distinctive form of inherited IFNAR1 deficiency

Journal of Clinical Investigation
2021-01-04 | Journal article
DOI: 10.1172/JCI139980
Contributors: Paul Bastard; Jeremy Manry; Jie Chen; Jérémie Rosain; Yoann Seeleuthner; Omar AbuZaitun; Lazaro Lorenzo; Taushif Khan; Mary Hasek; Nicholas Hernandez et al.
Source: check_circle
Crossref

Fatal cytomegalovirus infection in an adult with inherited NOS2 deficiency

New England Journal of Medicine
2020 | Journal article
DOI: 10.1056/NEJMoa1910640
EID:

2-s2.0-85078688952

Part of ISBN:

15334406 00284793
Contributors: Drutman, S.B.; Mansouri, D.; Mahdaviani, S.A.; Neehus, A.-L.; Hum, D.; Bryk, R.; Hernandez, N.; Belkaya, S.; Rapaport, F.; Bigio, B. et al.
Source: Self-asserted source
taushif khan via Scopus - Elsevier

Inherited human IFN-γ deficiency underlies mycobacterial disease

Journal of Clinical Investigation
2020 | Journal article
DOI: 10.1172/JCI135460
EID:

2-s2.0-85085294382

Part of ISBN:

15588238 00219738
Contributors: Kerner, G.; Rosain, J.; Guérin, A.; Al-Khabaz, A.; Oleaga-Quintas, C.; Rapaport, F.; Massaad, M.J.; Ding, J.-Y.; Khan, T.; Ali, F.A. et al.
Source: Self-asserted source
taushif khan via Scopus - Elsevier
grade
Preferred source (of 2)‎

Author Correction: Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins (Scientific Reports, (2017), 7, 1, (8826), 10.1038/s41598-017-08366-3)

Scientific Reports
2019 | Journal article
DOI: 10.1038/s41598-019-48219-9
EID:

2-s2.0-85070739052

Part of ISBN:

20452322
Contributors: Raimondi, D.; Orlando, G.; Pancsa, R.; Khan, T.; Vranken, W.F.
Source: Self-asserted source
taushif khan via Scopus - Elsevier

Lexicon visualization library and javascript for scientific data visualization

Computing in Science and Engineering
2018 | Journal article
DOI: 10.1109/MCSE.2018.011111125
EID:

2-s2.0-85042214305

Part of ISBN:

15219615
Contributors: Tanyalcin, I.; Assaf, C.A.; Ferte, J.; Ancien, F.; Khan, T.; Smits, G.; Rooman, M.; Vranken, W.
Source: Self-asserted source
taushif khan via Scopus - Elsevier

ProLego: Tool for extracting and visualizing topological modules in protein structures

BMC Bioinformatics
2018 | Journal article
DOI: 10.1186/s12859-018-2171-9
EID:

2-s2.0-85046434580

Part of ISBN:

14712105
Contributors: Khan, T.; Panday, S.K.; Ghosh, I.
Source: Self-asserted source
taushif khan via Scopus - Elsevier
grade
Preferred source (of 2)‎

Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins

Scientific Reports
2017 | Journal article
DOI: 10.1038/s41598-017-08366-3
EID:

2-s2.0-85027884754

Part of ISBN:

20452322
Contributors: Raimondi, D.; Orlando, G.; Pancsa, R.; Khan, T.; Vranken, W.F.
Source: Self-asserted source
taushif khan via Scopus - Elsevier

SVM-dependent pairwise HMM: An application to protein pairwise alignments

Bioinformatics
2017 | Journal article
DOI: 10.1093/bioinformatics/btx391
EID:

2-s2.0-85043979007

Part of ISBN:

14602059 13674803
Contributors: Orlando, G.; Raimondi, D.; Khan, T.; Lenaerts, T.; Vranken, W.F.
Source: Self-asserted source
taushif khan via Scopus - Elsevier

ProLego: tool for extracting and visualizing topological modules in protein structures

2017-11-27 | Other
DOI: 10.1101/225565
Contributors: Taushif Khan; Shailesh Kumar Panday; Indira Ghosh
Source: check_circle
Crossref

Modularity in protein structures: Study on all-alpha proteins

Journal of Biomolecular Structure and Dynamics
2015 | Journal article
DOI: 10.1080/07391102.2014.1003969
EID:

2-s2.0-84954026919

Part of ISBN:

15380254 07391102
Contributors: Khan, T.; Ghosh, I.
Source: Self-asserted source
taushif khan via Scopus - Elsevier

Human T-bet Governs Innate and Innate-like Adaptive IFN-γ Immunity against Mycobacteria

Journal article
Source: Self-asserted source
taushif khan

Inborn errors of type I IFN immunity in patients with life-threatening COVID-19

Science
Journal article
Source: Self-asserted source
taushif khan

Peer review (1 review for 1 publication/grant)

Review activity for Journal of hazardous, toxic and radioactive waste. (1)
How many people are using ORCID?