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Works (17)

Convergent Patterns of Karyotype Evolution Underlying Karyotype Uniformity in Conifers

Advanced Science
2025-02 | Journal article
DOI: 10.1002/advs.202411098
Contributors: Ren‐Gang Zhang; Hui Liu; Hong‐Yun Shang; Heng Shu; De‐Tuan Liu; Hao Yang; Kai‐Hua Jia; Xiao‐Quan Wang; Wei‐Bang Sun; Wei Zhao et al.
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A nearly telomere-to-telomere diploid genome assembly of Firmiana kwangsiensis, a threatened species in China

Scientific Data
2024-12-18 | Journal article
DOI: 10.1038/s41597-024-04250-8
Contributors: Boqiang Wang; Rengang Zhang; Weibang Sun; Jing Yang
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Evolution of Sex-linked Genes and the Role of Pericentromeric Regions in Sex Chromosomes: Insights from Diploid Willows

Molecular Biology and Evolution
2024-11-01 | Journal article
DOI: 10.1093/molbev/msae235
Contributors: Yi Wang; Ren-Gang Zhang; Elvira Hörandl; Zhi-Xiang Zhang; Deborah Charlesworth; Li He; John Parsch
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Telomere-to-telomere, gap-free assembly of the Rosa rugosa reference genome

Horticultural Plant Journal
2024-09 | Journal article
DOI: 10.1016/j.hpj.2024.06.005
Contributors: Dan Liu; Kun Liu; Boqiang Tong; Haili Guo; Kai Qu; Ting Xu; Ren-Gang Zhang; Wei Zhao; Xiaoman Xie; Longxin Wang et al.
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Robust identification of orthologous synteny with the Orthology Index and its applications in reconstructing the evolutionary history of plant genomes

2024-08-23 | Preprint
DOI: 10.21203/rs.3.rs-4798240/v1
Contributors: Kai-Hua Jia; Ren-Gang Zhang; Hong-Yun Shang; Heng Shu; Yongpeng Ma
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Allopolyploidization from two dioecious ancestors leads to recurrent evolution of sex chromosomes

Nature Communications
2024-08-12 | Journal article
DOI: 10.1038/s41467-024-51158-3
Contributors: Li He; Yuàn Wang; Yi Wang; Ren-Gang Zhang; Yuán Wang; Elvira Hörandl; Tao Ma; Yan-Fei Mao; Judith E. Mank; Ray Ming
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Chromosome-level genome assembly of the threatened resource plant Cinnamomum chago

Scientific Data
2024-05-03 | Journal article
DOI: 10.1038/s41597-024-03293-1
Contributors: Lidan Tao; Shiwei Guo; Zizhu Xiong; Rengang Zhang; Weibang Sun
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Genomic insights into endangerment and conservation of the garlic-fruit tree (Malania oleifera), a plant species with extremely small populations

GigaScience
2024-01-02 | Journal article
DOI: 10.1093/gigascience/giae070
Contributors: Yuanting Shen; Lidan Tao; Rengang Zhang; Gang Yao; Minjie Zhou; Weibang Sun; Yongpeng Ma
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The chromosome-scale genome of Magnolia sinica (Magnoliaceae) provides insights into the conservation of plant species with extremely small populations (PSESP)

GigaScience
2024-01-02 | Journal article
DOI: 10.1093/gigascience/giad110
Contributors: Lei Cai; Detuan Liu; Fengmao Yang; Rengang Zhang; Quanzheng Yun; Zhiling Dao; Yongpeng Ma; Weibang Sun
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Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)

Scientific Data
2023-12-15 | Journal article
DOI: 10.1038/s41597-023-02821-9
Contributors: Detuan Liu; Xiaoling Tian; Shicheng Shao; Yongpeng Ma; Rengang Zhang
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Chromosome-scale genome assembly of sweet tea (Lithocarpus polystachyus Rehder)

Scientific Data
2023-12-06 | Journal article
DOI: 10.1038/s41597-023-02791-y
Contributors: Hui Liu; Rengang Zhang; Biao-Feng Zhou; Zhao Shen; Xue-Yan Chen; Jie Gao; Baosheng Wang
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A haplotype-resolved genome assembly of Rhododendron vialii based on PacBio HiFi reads and Hi-C data

Scientific Data
2023-07-12 | Journal article
DOI: 10.1038/s41597-023-02362-1
Contributors: Yuhang Chang; Rengang Zhang; Yongpeng Ma; Weibang Sun
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The chromosome-level genome assembly and genes involved in biosynthesis of nervonic acid of Malania oleifera

Scientific Data
2023-05-19 | Journal article
DOI: 10.1038/s41597-023-02218-8
Contributors: Tianquan Yang; Rengang Zhang; Xiaoling Tian; Gang Yao; Yuanting Shen; Sihai Wang; Jianfeng Mao; Guangyuan Li; Aizhong Liu; Weibang Sun et al.
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Subgenome-aware analyses suggest a reticulate allopolyploidization origin in three Papaver genomes

Nature Communications
2023-04-19 | Journal article
DOI: 10.1038/s41467-023-37939-2
Contributors: Ren-Gang Zhang; Chaoxia Lu; Guang-Yuan Li; Jie Lv; Longxin Wang; Zhao-Xuan Wang; Zhe Chen; Dan Liu; Ye Zhao; Tian-Le Shi et al.
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Crossref

S <scp>ub</scp> P <scp>haser</scp> : a robust allopolyploid subgenome phasing method based on subgenome‐specific <i>k</i> ‐mers

New Phytologist
2022-07 | Journal article | Author
DOI: 10.1111/nph.18173
Part of ISSN: 0028-646X
Part of ISSN: 1469-8137
Contributors: Kai-Hua Jia; Zhao‐Xuan Wang; Longxin Wang; Guang‐Yuan Li; Wei Zhang; Xiao‐Ling Wang; Fang‐Ji Xu; Si‐Qian Jiao; Zhou Shanshan; Hui Liu et al.
Source: Self-asserted source
Ren-Gang Zhang

TEsorter: An accurate and fast method to classify LTR-retrotransposons in plant genomes

Horticulture Research
2022-01-05 | Journal article
DOI: 10.1093/hr/uhac017
Part of ISSN: 2052-7276
Contributors: Ren-Gang Zhang; Guang-Yuan Li; Xiao-Ling Wang; Jacques Dainat; Zhao-Xuan Wang; Shujun Ou; Yongpeng Ma
Source: Self-asserted source
Ren-Gang Zhang

TEsorter: lineage-level classification of transposable elements using conserved protein domains

2019-10-10 | Other
DOI: 10.1101/800177
Contributors: Ren-Gang Zhang; Zhao-Xuan Wang; Shujun Ou; Guang-Yuan Li
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Peer review (4 reviews for 2 publications/grants)

Review activity for GigaScience. (2)
Review activity for Scientific data. (2)
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