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Researcher Name Resolver ID: 1000040708997
Loop profile: 1266189
SciProfiles: 2752161
Scopus Author ID: 57223334922

Keywords

Microbiology, Biophysics, Optical microscopy

Countries

Japan

Activities

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Employment (5)

The University of Electro-Communications: Chofu, Tokyo, JP

2023-12-01 to present | Associate Professor (Engineering Science)
Employment
Source: Self-asserted source
Daisuke Nakane

The University of Electro-Communications: Chofu, Tokyo, JP

2020-10-01 to 2023-11-30 | Assistant Professor (Engineering Science)
Employment
Source: Self-asserted source
Daisuke Nakane

Gakushuin University: Tokyo, JP

2013-04-01 to 2020-09-30 | Assistant Professor (Physics)
Employment
Source: Self-asserted source
Daisuke Nakane

Nagasaki University: Nagasaki, JP

2011-04-01 to 2013-03-31 | JSPS Felloeship (PD) (Biomedical Sciences)
Employment
Source: Self-asserted source
Daisuke Nakane

Osaka City University: Osaka, JP

2010-04-01 to 2011-03-31 | JSPS Fellowship (PD) (Biology)
Employment
Source: Self-asserted source
Daisuke Nakane

Education and qualifications (1)

Osaka City University: Osaka, JP

2010-03-31 | PhD (Biology)
Education
Source: Self-asserted source
Daisuke Nakane

Funding (9)

Direct visualization of bacterial drill tank in vivo

2022-05-20 to 2025-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
URL: https://app.dimensions.ai/details/grant/grant.13823551
GRANT_NUMBER: 22H05066
Source: Self-asserted source
Daisuke Nakane via DimensionsWizard

The reason why microbes are moving: The dawn of behavioral microbiology

2022-05-20 to 2025-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
URL: https://app.dimensions.ai/details/grant/grant.13823550
GRANT_NUMBER: 22H05065
Source: Self-asserted source
Daisuke Nakane via DimensionsWizard

Cell motility of pathogenic bacteria manipulated by a fluid flow

2021-04-01 to 2024-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
URL: https://app.dimensions.ai/details/grant/grant.9682101
GRANT_NUMBER: 21K07020
Source: Self-asserted source
Daisuke Nakane via DimensionsWizard

Information processing of light at single bacterial cell

2020-04-01 to 2022-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
URL: https://app.dimensions.ai/details/grant/grant.9190929
GRANT_NUMBER: 20H05543
Source: Self-asserted source
Daisuke Nakane via DimensionsWizard

Elucidation of the mechanical stimulus response mechanism by type IV pili of live imaging

2016-04-01 to 2019-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
URL: https://grants.uberresearch.com/501100001691/16H06230/Elucidation-of-the-mechanical-stimulus-response-mechanism-by-type-IV-pili-of-live-imaging
GRANT_NUMBER: 16H06230
Source: Self-asserted source
Daisuke Nakane via DimensionsWizard

Bacteria to a high-speed swimming exercise without a flagellar

2015-04-01 to 2017-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
URL: https://grants.uberresearch.com/501100001691/15H01329/Bacteria-to-a-high-speed-swimming-exercise-without-a-flagellar
GRANT_NUMBER: 15H01329
Source: Self-asserted source
Daisuke Nakane via DimensionsWizard

3D dynamic imaging of gliding-srcretion apparatus in Bacteroidetes

2013-08-30 to 2015-03-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
URL: https://grants.uberresearch.com/501100001691/25893230/3D-dynamic-imaging-of-gliding-srcretion-apparatus-in-Bacteroidetes
GRANT_NUMBER: 25893230
Source: Self-asserted source
Daisuke Nakane via DimensionsWizard

Shape and behavior of the sliding-secretion apparatus with the Bacteroides

2011-01-01 to 2012-12-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
URL: https://grants.uberresearch.com/501100001691/11J01792/Shape-and-behavior-of-the-sliding-secretion-apparatus-with-the-Bacteroides
GRANT_NUMBER: 11J01792
Source: Self-asserted source
Daisuke Nakane via DimensionsWizard

Mechanism of mycoplasma gliding motion

2008-01-01 to 2010-12-31 | Grant
Japan Society for the Promotion of Science (Tokyo, JP)
URL: https://grants.uberresearch.com/501100001691/08J10913/Mechanism-of-mycoplasma-gliding-motion
GRANT_NUMBER: 08J10913
Source: Self-asserted source
Daisuke Nakane via DimensionsWizard

Works (50 of 58)

Items per page:
Page 1 of 2

Rapid water flow navigates long-distance migration of thermophilic bacteria

2025-02-04 | Preprint
DOI: 10.1101/2025.02.04.634400
Contributors: Naoki A. Uemura; Naoya Chiba; Ryota Morikawa; Masatada Tamakoshi; Daisuke Nakane
Source: check_circle
Crossref

Retraction

Science Advances
2025-01-03 | Journal article
DOI: 10.1126/sciadv.adv4615
Contributors: Yukihiro Hiramatsu; Takashi Nishida; Dendi Krisna Nugraha; Mayuko Osada-Oka; Daisuke Nakane; Katsumi Imada; Yasuhiko Horiguchi
Source: check_circle
Crossref

Evolution of a large periplasmic disk in Campylobacterota flagella enables both efficient motility and autoagglutination

Developmental Cell
2024-12 | Journal article
DOI: 10.1016/j.devcel.2024.09.008
Contributors: Eli J. Cohen; Tina Drobnič; Deborah A. Ribardo; Aoba Yoshioka; Trishant Umrekar; Xuefei Guo; Jose-Jesus Fernandez; Emma E. Brock; Laurence Wilson; Daisuke Nakane et al.
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Crossref

Cell surface architecture of the cultivated DPANN archaeon Nanobdella aerobiophila

Journal of Bacteriology
2024-02-22 | Journal article
DOI: 10.1128/jb.00351-23
Contributors: Shingo Kato; Yuhei O. Tahara; Yuki Nishimura; Katsuyuki Uematsu; Takahiro Arai; Daisuke Nakane; Ayaka Ihara; Takayuki Nishizaka; Wataru Iwasaki; Takashi Itoh et al.
Source: check_circle
Crossref

Internal structure ofMycoplasma mobilegliding machinery analyzed by negative staining electron tomography

2024-02-09 | Preprint
DOI: 10.1101/2024.02.08.578511
Contributors: Minoru Fukushima; Takuma Toyonaga; Yuhei O. Tahara; Daisuke Nakane; Makoto Miyata
Source: check_circle
Crossref

Rheotaxis in Mycoplasma gliding

Microbiology and Immunology
2023-09 | Journal article
DOI: 10.1111/1348-0421.13090
Contributors: Daisuke Nakane
Source: check_circle
Crossref

Evolution of a large periplasmic disk inCampylobacterotaflagella facilitated efficient motility alongside autoagglutination

2023-09-08 | Preprint
DOI: 10.1101/2023.09.08.556628
Contributors: Eli J. Cohen; Tina Drobnič; Deborah A. Ribardo; Aoba Yoshioka; Trishant Umrekar; Xuefei Guo; Jose-Jesus Fernandez; Emma Brock; Laurence Wilson; Daisuke Nakane et al.
Source: check_circle
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Isolation and Visualization of Gliding Motility Machinery in Bacteroidota.

Methods in molecular biology (Clifton, N.J.)
2023-01 | Journal article
DOI: 10.1007/978-1-0716-3060-0_21
PMID: 36842121
Contributors: Shibata S; Nakane D
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central
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Live Cell Imaging of Gliding Motility of Flavobacterium johnsoniae Under High-Resolution Microscopy.

Methods in molecular biology (Clifton, N.J.)
2023-01 | Journal article
DOI: 10.1007/978-1-0716-3060-0_22
PMID: 36842122
Contributors: Nakane D; Shibata S
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central
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Live Cell Imaging of the Twitching Motility of Cyanobacteria by High-Resolution Microscopy.

Methods in molecular biology (Clifton, N.J.)
2023-01 | Journal article
DOI: 10.1007/978-1-0716-3060-0_20
PMID: 36842120
Contributors: Nakane D
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central
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Swimming Motility Assays of Spiroplasma.

Methods in molecular biology (Clifton, N.J.)
2023-01 | Journal article
DOI: 10.1007/978-1-0716-3060-0_31
PMID: 36842131
Contributors: Nakane D
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central
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Filamentous structures in the cell envelope are associated with bacteroidetes gliding machinery

Communications Biology
2023-01-23 | Journal article
DOI: 10.1038/s42003-023-04472-3
Contributors: Satoshi Shibata; Yuhei O. Tahara; Eisaku Katayama; Akihiro Kawamoto; Takayuki Kato; Yongtao Zhu; Daisuke Nakane; Keiichi Namba; Makoto Miyata; Mark J. McBride et al.
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A Multi-Rail Structure in the Cell Envelope for the Bacteroidetes Gliding Machinery

ResearchSquare
2022 | Other
DOI: 10.21203/rs.3.rs-1802191
EID:

2-s2.0-85134941005
Contributors: Shibata, S.; Tahara, Y.O.; Katayama, E.; Kawamoto, A.; Kato, T.; Zhu, Y.; Nakane, D.; Namba, K.; Miyata, M.; McBride, M.J. et al.
Source: Self-asserted source
Daisuke Nakane via Scopus - Elsevier

RETRACTED: Interference of flagellar rotation up-regulates the expression of small RNA contributing to Bordetella pertussis infection

Science Advances
2022-12-23 | Journal article
DOI: 10.1126/sciadv.ade8971
Contributors: Yukihiro Hiramatsu; Takashi Nishida; Dendi Krisna Nugraha; Mayuko Osada-Oka; Daisuke Nakane; Katsumi Imada; Yasuhiko Horiguchi
Source: check_circle
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Self‐Assembled Micro‐Sized Hexagons Built from Short DNA in a Crowded Environment

ChemBioChem
2022-11-18 | Journal article
DOI: 10.1002/cbic.202200360
Contributors: Tetsunao Makino; Daisuke Nakane; Makiko Tanaka
Source: check_circle
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Cell shape controls rheotaxis in small parasitic bacteria

PLOS Pathogens
2022-07-14 | Journal article
DOI: 10.1371/journal.ppat.1010648
Contributors: Daisuke Nakane; Mitchell F. Balish; Yoshiki Kabata; Takayuki Nishizaka
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Design Principles of the Rotary Type 9 Secretion System

Frontiers in Microbiology
2022-05-10 | Journal article
DOI: 10.3389/fmicb.2022.845563
Part of ISSN: 1664-302X
Source: Self-asserted source
Daisuke Nakane
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Thermosynechococcus switches the direction of phototaxis by a c-di-GMP-dependent process with high spatial resolution

eLife
2022-05-10 | Journal article
DOI: 10.7554/eLife.73405
Contributors: Daisuke Nakane; Gen Enomoto; Heike Bähre; Yuu Hirose; Annegret Wilde; Takayuki Nishizaka
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Thermosynechococcus switches the direction of phototaxis by a c-di-GMP dependent process with high spatial resolution

bioRxiv
2021 | Other
DOI: 10.1101/2021.08.26.457869
EID:

2-s2.0-85115336563

Part of ISSN: 26928205
Contributors: Nakane, D.; Enomoto, G.; Wilde, A.; Nishizaka, T.
Source: Self-asserted source
Daisuke Nakane via Scopus - Elsevier

Large-Scale Vortices with Dynamic Rotation Emerged from Monolayer Collective Motion of Gliding Flavobacteria

Journal of Bacteriology
2021-06-22 | Journal article
DOI: 10.1128/JB.00073-21
Contributors: Daisuke Nakane; Shoko Odaka; Kana Suzuki; Takayuki Nishizaka; George O'Toole
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Molecular ruler of the attachment organelle in Mycoplasma pneumoniae

PLOS Pathogens
2021-06-10 | Journal article
DOI: 10.1371/journal.ppat.1009621
Contributors: Daisuke Nakane; Christopher M. Sassetti; Kohki Murata; Tsuyoshi Kenri; Keigo Shibayama; Takayuki Nishizaka
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Tree of motility – A proposed history of motility systems in the tree of life

Genes to Cells
2020 | Journal article
DOI: 10.1111/gtc.12737
EID:

2-s2.0-85077987635

Part of ISSN: 13652443 13569597
Contributors: Miyata, M.; Robinson, R.C.; Uyeda, T.Q.P.; Fukumori, Y.; Fukushima, S.-I.; Haruta, S.; Homma, M.; Inaba, K.; Ito, M.; Kaito, C. et al.
Source: Self-asserted source
Daisuke Nakane via Scopus - Elsevier

Campylobacter jejuni motility integrates specialized cell shape, flagellar filament, and motor, to coordinate action of its opposed flagella

PLOS Pathogens
2020-07-02 | Journal article
DOI: 10.1371/journal.ppat.1008620
Part of ISSN: 1553-7374
Contributors: Eli J. Cohen; Daisuke Nakane; Yoshiki Kabata; David R. Hendrixson; Takayuki Nishizaka; Morgan Beeby; Tomoko Kubori
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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Coexistence of Two Chiral Helices Produces Kink Translation in Spiroplasma Swimming

Journal of Bacteriology
2020-03-26 | Journal article
DOI: 10.1128/JB.00735-19
Contributors: Daisuke Nakane; Tatsuro Ito; Takayuki Nishizaka; Ann M. Stock
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Insights into the mechanism of ATP-driven rotary motors from direct torque measurement

Biophysical Reviews
2019 | Journal article
DOI: 10.1007/s12551-019-00564-9
EID:

2-s2.0-85069494054

Part of ISSN: 18672469 18672450
Contributors: Nishizaka, T.; Masaike, T.; Nakane, D.
Source: Self-asserted source
Daisuke Nakane via Scopus - Elsevier

Refined mechanism of Mycoplasma mobile gliding based on structure, ATPase activity, and sialic acid binding of machinery

bioRxiv
2019 | Other
DOI: 10.1101/823039
EID:

2-s2.0-85095657400

Part of ISSN: 26928205
Contributors: Nishikawa, M.S.; Nakane, D.; Toyonaga, T.; Kawamoto, A.; Kato, T.; Namba, K.; Miyata, M.
Source: Self-asserted source
Daisuke Nakane via Scopus - Elsevier

“Campylobacter jejuni motility integrates specialized cell shape, flagellar filament, and motor, to coordinate action of its opposed flagella in viscous media”

bioRxiv
2019 | Other
DOI: 10.1101/2019.12.26.888701
EID:

2-s2.0-85095624906

Part of ISSN: 26928205
Contributors: Cohen, E.J.; Nakane, D.; Kabata, Y.; Hendrixson, D.R.; Nishizaka, T.; Beeby, M.
Source: Self-asserted source
Daisuke Nakane via Scopus - Elsevier

Refined Mechanism of Mycoplasma mobile Gliding Based on Structure, ATPase Activity, and Sialic Acid Binding of Machinery

mBio
2019-12-24 | Journal article
DOI: 10.1128/mBio.02846-19
Contributors: Miyuki S. Nishikawa; Daisuke Nakane; Takuma Toyonaga; Akihiro Kawamoto; Takayuki Kato; Keiichi Namba; Makoto Miyata; Richard Gerald Brennan
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Characterization of Zoospore Type IV Pili in Actinoplanes missouriensis

Journal of Bacteriology
2019-07-15 | Journal article
DOI: 10.1128/JB.00746-18
Contributors: Tomohiro Kimura; Takeaki Tezuka; Daisuke Nakane; Takayuki Nishizaka; Shin-Ichi Aizawa; Yasuo Ohnishi; Victor J. DiRita
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Motor torque measurement of Halobacterium salinarum archaellar suggests a general model for ATP-driven rotary motors

Communications Biology
2019-05-24 | Journal article
DOI: 10.1038/s42003-019-0422-6
Contributors: Seiji Iwata; Yoshiaki Kinosita; Nariya Uchida; Daisuke Nakane; Takayuki Nishizaka
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Single-molecule pull-out manipulation of the shaft of the rotary motor F1-ATPase

Scientific Reports
2019-05-15 | Journal article
DOI: 10.1038/s41598-019-43903-2
Contributors: Tatsuya M. Naito; Tomoko Masaike; Daisuke Nakane; Mitsuhiro Sugawa; Kaoru A. Okada; Takayuki Nishizaka
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Three-dimensional tracking of microbeads attached to the tip of single isolated tracheal cilia beating under external load

Scientific Reports
2018-10 | Journal article
DOI: 10.1038/s41598-018-33846-5
Part of ISSN: 2045-2322
Contributors: Takanobu A. Katoh; Koji Ikegami; Nariya Uchida; Toshihito Iwase; Daisuke Nakane; Tomoko Masaike; Mitsutoshi Setou; Takayuki Nishizaka
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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Identification of a major glucose transporter in Flavobacterium johnsoniae: Inhibition of F. johnsoniae colony spreading by glucose uptake.

Microbiology and immunology
2018-08 | Journal article
DOI: 10.1111/1348-0421.12633
PMID: 29932229
Contributors: Imamura K; Sato K; Narita Y; Kondo Y; Nakane D; Naito M; Fujiwara T; Nakayama K
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central
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Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system.

Molecular microbiology
2018-07 | Journal article
DOI: 10.1111/mmi.14083
PMID: 30030863
Contributors: Sato K; Kakuda S; Yukitake H; Kondo Y; Shoji M; Takebe K; Narita Y; Naito M; Nakane D; Abiko Y et al.
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central
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Unforeseen swimming and gliding mode of an insect gut symbiont, Burkholderia sp. RPE64, with wrapping of the flagella around its cell body

The ISME Journal
2018-03-01 | Journal article
DOI: 10.1038/s41396-017-0010-z
Contributors: Yoshiaki Kinosita; Yoshitomo Kikuchi; Nagisa Mikami; Daisuke Nakane; Takayuki Nishizaka
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Asymmetric distribution of type IV pili triggered by directional light in unicellular cyanobacteria

Proceedings of the National Academy of Sciences
2017-06-05 | Journal article
DOI: 10.1073/pnas.1702395114
Contributors: Daisuke Nakane; Takayuki Nishizaka
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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Chemotaxis without Conventional Two-Component System, Based on Cell Polarity and Aerobic Conditions in Helicity-Switching Swimming of Spiroplasma eriocheiris

Frontiers in Microbiology
2017-02-03 | Journal article
DOI: 10.3389/fmicb.2017.00058
Contributors: Peng Liu; Huajun Zheng; Qingguo Meng; Natsuho Terahara; Wei Gu; Shengyue Wang; Guoping Zhao; Daisuke Nakane; Wen Wang; Makoto Miyata
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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Direct observation of rotation and steps of the archaellum in the swimming halophilic archaeon Halobacterium salinarum

Nature Microbiology
2016-08 | Journal article
DOI: 10.1038/nmicrobiol.2016.148
Contributors: Yoshiaki Kinosita; Nariya Uchida; Daisuke Nakane; Takayuki Nishizaka
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Daisuke Nakane via Crossref Metadata Search
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Directed Binding of Gliding Bacterium,Mycoplasma mobile, Shown by Detachment Force and Bond Lifetime

mBio
2016-06 | Journal article
DOI: 10.1128/mbio.00455-16
Contributors: Akihiro Tanaka; Daisuke Nakane; Masaki Mizutani; Takayuki Nishizaka; Makoto Miyata
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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[Mechanism of bacterial gliding motility].

2015 | Journal article
DOI: 10.3412/jsb.70.375
PMID: 26632217
Contributors: Nakane D
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central
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Flavobacterium gliding motility and the type IX secretion system

Current Opinion in Microbiology
2015 | Journal article
DOI: 10.1016/j.mib.2015.07.016
Contributors: Mark J McBride; Daisuke Nakane
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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Systematic Structural Analyses of Attachment Organelle in Mycoplasma pneumoniae

PLOS Pathogens
2015 | Journal article
DOI: 10.1371/journal.ppat.1005299
Contributors: Daisuke Nakane; Tsuyoshi Kenri; Lisa Matsuo; Makoto Miyata; Mitchell F. Balish
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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Bacteriocin protein BacL1 of Enterococcus faecalis targets cell division loci and specifically recognizes L-Ala2-cross-bridged peptidoglycan.

2015-01 | Journal article
DOI: 10.1128/jb.02203-14
PMID: 25368300
PMC: PMC4272589
Contributors: Kurushima J; Nakane D; Nishizaka T; Tomita H
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central
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Bacterium Moves like a Tank

Seibutsu Butsuri
2014 | Journal article
DOI: 10.2142/biophys.54.269
Contributors: Daisuke NAKANE; Koji NAKAYAMA; Takayuki NISHIZAKA
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search

Lack of a surface layer in Tannerella forsythia mutants deficient in the type IX secretion system.

2014-10 | Journal article
DOI: 10.1099/mic.0.080192-0
PMID: 25023245
PMC: PMC4175972
Contributors: Narita Y; Sato K; Yukitake H; Shoji M; Nakane D; Nagano K; Yoshimura F; Naito M; Nakayama K
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central

Unitary step of gliding machinery in Mycoplasma mobile

Proceedings of the National Academy of Sciences
2014-05 | Journal article
DOI: 10.1073/pnas.1310355111
Contributors: Y. Kinosita; D. Nakane; M. Sugawa; T. Masaike; K. Mizutani; M. Miyata; T. Nishizaka
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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Bidirectional Bacterial Gliding Motility Powered by the Collective Transport of Cell Surface Proteins

Physical Review Letters
2013 | Journal article
DOI: 10.1103/physrevlett.111.248102
Contributors: Hirofumi Wada; Daisuke Nakane; Hsuan-Yi Chen
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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Helical flow of surface protein required for bacterial gliding motility

Proceedings of the National Academy of Sciences
2013-06 | Journal article
DOI: 10.1073/pnas.1219753110
Contributors: D. Nakane; K. Sato; H. Wada; M. J. McBride; K. Nakayama
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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Decoding system for the AUA codon by tRNAIle with the UAU anticodon in Mycoplasma mobile.

2013-02 | Journal article
DOI: 10.1093/nar/gks1344
PMID: 23295668
PMC: PMC3575796
Contributors: Taniguchi T; Miyauchi K; Nakane D; Miyata M; Muto A; Nishimura S; Suzuki T
Source: Self-asserted source
Daisuke Nakane via Europe PubMed Central
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Role of Binding in Mycoplasma mobile and Mycoplasma pneumoniae Gliding Analyzed through Inhibition by Synthesized Sialylated Compounds

Journal of Bacteriology
2012-11-02 | Journal article
DOI: 10.1128/jb.01141-12
Contributors: T. Kasai; D. Nakane; H. Ishida; H. Ando; M. Kiso; M. Miyata
Source: Self-asserted source
Daisuke Nakane via Crossref Metadata Search
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