Personal information

Other IDs

Scopus Author ID: 57190045633
Loop profile: 478487

Keywords

Bioinformatics, Genomics, Tumorprofiling, Cancer Bioinformatics

Countries

Switzerland

Activities

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Employment (4)

University Hospital of Zurich: Zurich, CH

2023-05 to present | Head of Bioinformatics and LabIT (Departement of Pathology - Molecular Tumor Profiling (FMI Lab))
Employment
Source: Self-asserted source
Michael Schmid

Genexa AG: Zürich, Zürich, CH

2018-06 to 2023-04 | CEO
Employment
Source: Self-asserted source
Michael Schmid

Agroscope Standort Wädenswil: Wadenswil, ZH, CH

2015 to 2019 | Bioinformatician
Employment
Source: Self-asserted source
Michael Schmid

ECOM Engineering: St.Gallen, CH

2008 to 2010 | Electrical Engineer
Employment
Source: Self-asserted source
Michael Schmid

Education and qualifications (2)

Universitiy of Zurich: Zurich, Zurich, CH

2010 to 2015 | MSc in Biology
Education
Source: Self-asserted source
Michael Schmid

Zurich University of Applied Sciences: Winterthur, Zurich, CH

2004 to 2007 | Dipl. El-Ing. (Engineering)
Education
Source: Self-asserted source
Michael Schmid

Works (21)

Single-cell RNA-sequencing of BK polyomavirus replication in primary human renal proximal tubular epithelial cells identifies specific transcriptome signatures and a novel mitochondrial stress pattern

Journal of Virology
2024-12-17 | Journal article
DOI: 10.1128/jvi.01382-24
Contributors: Fabian H. Weissbach; Océane M. Follonier; Svenia Schmid; Karoline Leuzinger; Michael Schmid; Hans H. Hirsch; Lawrence Banks
Source: check_circle
Crossref

Phospho-RNA sequencing with circAID-p-seq

Nucleic Acids Research
2021-12-01 | Journal article
DOI: 10.1093/nar/gkab1158
Part of ISSN: 0305-1048
Part of ISSN: 1362-4962
Source: Self-asserted source
Michael Schmid

Evaluation of Oxford Nanopore MinION RNA-Seq Performance for Human Primary Cells

International Journal of Molecular Sciences
2021-06-12 | Journal article
DOI: 10.3390/ijms22126317
Contributors: Ilaria Massaiu; Paola Songia; Mattia Chiesa; Vincenza Valerio; Donato Moschetta; Valentina Alfieri; Veronika A. Myasoedova; Michael Schmid; Luca Cassetta; Gualtiero I. Colombo et al.
Source: check_circle
Crossref
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Phospho-RNA sequencing with CircAID-p-seq

bioRxiv
2020-12 | Journal article
DOI: 10.1101/2020.12.16.423093
Source: Self-asserted source
Michael Schmid

The neonicotinoid thiacloprid causes transcriptional alteration of genes associated with mitochondria at environmental concentrations in honey bees

Environmental Pollution
2020-11 | Journal article
DOI: 10.1016/j.envpol.2020.115297
Contributors: Karl Fent; Michael Schmid; Timm Hettich; Simon Schmid
Source: check_circle
Crossref

Global transcriptome analysis reveals relevant effects at environmental concentrations of cypermethrin in honey bees (Apis mellifera)

Environmental Pollution
2020-04 | Journal article
DOI: 10.1016/j.envpol.2019.113715
Contributors: Karl Fent; Michael Schmid; Verena Christen
Source: check_circle
Crossref

Pseudomonas orientalis F9 Pyoverdine, Safracin, and Phenazine Mutants Remain Effective Antagonists against Erwinia amylovora in Apple Flowers.

Applied and environmental microbiology
2020-04 | Journal article
DOI: 10.1128/aem.02620-19
PMID: 32033956
PMC: PMC7117935
Contributors: Santos Kron A; Zengerer V; Bieri M; Dreyfuss V; Sostizzo T; Schmid M; Lutz M; Remus-Emsermann MNP; Pelludat C
Source: Self-asserted source
Michael Schmid via Europe PubMed Central

Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system

BMC Microbiology
2019-06-25 | Journal article
DOI: 10.1186/s12866-019-1500-0
Part of ISSN: 1471-2180
Source: Self-asserted source
Michael Schmid

Long read-based de novo assembly of low complex metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system

2018-11 | Other
DOI: 10.1101/476747
OTHER-ID:

PPR62664
Contributors: Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
Source: Self-asserted source
Michael Schmid via Europe PubMed Central

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats

Nucleic Acids Research
2018-08 | Journal article
DOI: 10.1093/nar/gky726
Part of ISSN: 0305-1048
Contributors: Michael Schmid; Daniel Frei; Andrea Patrignani; Ralph Schlapbach; Jürg E Frey; Mitja N P Remus-Emsermann; Christian H Ahrens
Source: Self-asserted source
Michael Schmid via Crossref Metadata Search

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats

bioRxiv
2018-04 | Journal article
Part of DOI: 10.1101/300186
Source: Self-asserted source
Michael Schmid

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats

2018-04-12 | Other
DOI: 10.1101/300186
Contributors: Michael Schmid; Daniel Frei; Andrea Patrignani; Ralph Schlapbach; Jürg E. Frey; Mitja N.P. Remus-Emsermann; Christian H. Ahrens
Source: check_circle
Crossref

Pseudomonas orientalis F9: A Potent Antagonist against Phytopathogens with Phytotoxic Effect in the Apple Flower

Frontiers in Microbiology
2018-02-09 | Journal article
DOI: 10.3389/fmicb.2018.00145
Part of ISSN: 1664-302X
Contributors: Veronika Zengerer; Michael Schmid; Marco Bieri; Denise C. Müller; Mitja N. P. Remus-Emsermann; Christian H. Ahrens; Cosima Pelludat
Source: Self-asserted source
Michael Schmid via Crossref Metadata Search

Comparative Genomics of Completely Sequenced Lactobacillus helveticus Genomes Provides Insights into Strain-Specific Genes and Resolves Metagenomics Data Down to the Strain Level

Frontiers in Microbiology
2018-01 | Journal article
DOI: 10.3389/fmicb.2018.00063
Part of ISSN: 1664-302X
Contributors: Michael Schmid; Jonathan Muri; Damianos Melidis; Adithi R. Varadarajan; Vincent Somerville; Adrian Wicki; Aline Moser; Marc Bourqui; Claudia Wenzel; Elisabeth Eugster-Meier et al.
Source: Self-asserted source
Michael Schmid via Crossref Metadata Search

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics.

Genome research
2017-11 | Journal article
DOI: 10.1101/gr.218255.116
PMID: 29141959
Source: Self-asserted source
Michael Schmid via Europe PubMed Central

Biofilm Formation Potential of Heat Resistant Escherichia coli Dairy Isolates and Complete Genome of MDR Heat Resistant Strain FAM21845.

2017-05 | Journal article
DOI: 10.1128/aem.00628-17
PMID: 28550056
Contributors: Marti R; Schmid M; Kulli S; Schneeberger K; Naskova J; Knøchel S; Ahrens CH; Hummerjohann J
Source: Self-asserted source
Michael Schmid via Europe PubMed Central
grade
Preferred source (of 2)‎

Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi.

2017-01 | Journal article
DOI: 10.1186/s12866-016-0908-z
PMID: 28056814
PMC: PMC5216558
Contributors: Hilber-Bodmer M; Schmid M; Ahrens CH; Freimoser FM
Source: Self-asserted source
Michael Schmid via Europe PubMed Central
grade
Preferred source (of 2)‎

Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites

Standards in Genomic Sciences
2016 | Journal article
DOI: 10.1186/s40793-016-0190-6
EID:

2-s2.0-84988850963
Contributors: Remus-Emsermann, M.N.P.; Schmid, M.; Gekenidis, M.-T.; Pelludat, C.; Frey, J.E.; Ahrens, C.H.; Drissner, D.
Source: Self-asserted source
Michael Schmid via Scopus - Elsevier

Infectio: a Generic Framework for Computational Simulation of Virus Transmission between Cells.

2016 | Journal article
DOI: 10.1128/msphere.00078-15
PMID: 27303704
PMC: PMC4863613
Contributors: Yakimovich A; Yakimovich Y; Schmid M; Mercer J; Sbalzarini IF; Greber UF
Source: Self-asserted source
Michael Schmid via Europe PubMed Central

Short communication: Heat-resistant Escherichia coli as potential persistent reservoir of extended-spectrum β-lactamases and Shiga toxin-encoding phages in dairy

Journal of Dairy Science
2016 | Journal article
DOI: 10.3168/jds.2016-11076
EID:

2-s2.0-85002821973
Contributors: Marti, R.; Muniesa, M.; Schmid, M.; Ahrens, C.H.; Naskova, J.; Hummerjohann, J.
Source: Self-asserted source
Michael Schmid via Scopus - Elsevier

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.

2016-01 | Journal article
DOI: 10.1093/nar/gkv1310
PMID: 26615188
PMC: PMC4702916
Contributors: SIB Swiss Institute of Bioinformatics Members
Source: Self-asserted source
Michael Schmid via Europe PubMed Central
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