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Emergence of Recombinant SARS-CoV-2 Variants in California from 2020 to 2022

Viruses
2024-07-27 | Journal article
Contributors: Rahil Ryder; Emily Smith; Deva Borthwick; Jesse Elder; Mayuri Panditrao; Christina Morales; Debra A. Wadford
Source: check_circle
Crossref

Emergence of recombinant SARS-CoV-2 variants in California, 2020-2022

2024-06-27 | Preprint
Contributors: Rahil Ryder; Emily Smith; Deva Borthwick; Jesse Elder; Mayuri Panditrao; Christina Morales; Debra A. Wadford
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine learning method

2023-05-27 | Preprint
Contributors: Adriano de Bernardi Schneider; Michelle Su; Angie S. Hinrichs; Jade Wang; Helly Amin; John Bell; Debra A. Wadford; Àine O’Toole; Emily Scher; Marc D. Perry et al.
Source: check_circle
Crossref

Evaluation of co-circulating pathogens and microbiome from COVID-19 infections.

PloS one
2022-12 | Journal article
Contributors: Thissen JB; Morrison MD; Mulakken N; Nelson WC; Daum C; Messenger S; Wadford DA; Jaing C
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central
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Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples

Viruses
2022-12 | Journal article | Author
Contributors: Jeffrey Kimbrel; Joseph Moon; Aram Avila-Herrera; Jose Manuel Martí; James Thissen; Nisha Mulakken; Sarah H. Sandholtz; Tyshawn Ferrell; Chris Daum; Sara Hall et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute

Epidemiologic and Clinical Features of Children and Adolescents Aged <18 Years with Monkeypox - United States, May 17-September 24, 2022.

MMWR. Morbidity and mortality weekly report
2022-11 | Journal article
Contributors: Hennessee I; Shelus V; McArdle CE; Wolf M; Schatzman S; Carpenter A; Minhaj FS; Petras JK; Cash-Goldwasser S; Maloney M et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Neutralizing Immunity Induced Against the Omicron BA.1 and BA.2 Variants in Vaccine Breakthrough Infections.

The Journal of infectious diseases
2022-11 | Journal article
Contributors: Brazer N; Morris MK; Servellita V; Anglin K; Saldhi P; Garcia-Knight M; Bethancourt S; Sotomayor-Gonzalez A; Wang B; Foresythe A et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Adeno-associated virus type 2 in children from the United States with acute severe hepatitis

2022-09 | Preprint
Contributors: Servellita V; Gonzalez AS; Lamson DM; Foresythe A; Huh HJ; Bazinet AL; Bergman NH; Bull RL; Garcia KY; Goodrich JS et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Interim Analysis of Acute Hepatitis of Unknown Etiology in Children Aged <10 Years - United States, October 2021-June 2022.

MMWR. Morbidity and mortality weekly report
2022-07 | Journal article
Contributors: Cates J; Baker JM; Almendares O; Kambhampati AK; Burke RM; Balachandran N; Burnett E; Potts CC; Reagan-Steiner S; Kirking HL et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Limited cross-variant immunity from SARS-CoV-2 Omicron without vaccination.

Nature
2022-05 | Journal article
Contributors: Suryawanshi RK; Chen IP; Ma T; Syed AM; Brazer N; Saldhi P; Simoneau CR; Ciling A; Khalid MM; Sreekumar B et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Neutralizing immunity in vaccine breakthrough infections from the SARS-CoV-2 Omicron and Delta variants.

Cell
2022-03 | Journal article
Contributors: Servellita V; Syed AM; Morris MK; Brazer N; Saldhi P; Garcia-Knight M; Sreekumar B; Khalid MM; Ciling A; Chen PY et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California.

Nature microbiology
2022-01 | Journal article
Contributors: Servellita V; Morris MK; Sotomayor-Gonzalez A; Gliwa AS; Torres E; Brazer N; Zhou A; Hernandez KT; Sankaran M; Wang B et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Severe Acute Respiratory Syndrome Coronavirus 2 and Respiratory Virus Sentinel Surveillance, California, USA, May 10, 2020-June 12, 2021.

Emerging infectious diseases
2022-01 | Journal article
Contributors: Cooksey GLS; Morales C; Linde L; Schildhauer S; Guevara H; Chan E; Gibb K; Wong J; Lin W; Bonin BJ et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Outbreak of COVID-19 among vaccinated and unvaccinated homeless shelter residents — Sonoma County, California, July 2021

2021-12 | Preprint
Contributors: Bukatko A; Lobato MN; Mosites E; Stainken C; Reihl K; Deldari M; Bell JM; Morris MK; Wadford DA; Harriman K et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

366. Abbott BinaxNOW Rapid Antigen Test Performance in Detecting SARS-CoV-2 Infections in a COVID-19 Outbreak Among Horse Racetrack Workers

Open forum infectious diseases
2021-11 | Journal article
Contributors: Surasi K; Cummings K; Hanson C; Morris M; Salas M; Seftel D; Ortiz L; Thilakaratne R; Stainken C; Wadford D
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Author Correction: Pan-viral serology implicates enteroviruses in acute flaccid myelitis.

Nature medicine
2021-10 | Journal article
Contributors: Schubert RD; Hawes IA; Ramachandran PS; Ramesh A; Crawford ED; Pak JE; Wu W; Cheung CK; O'Donovan BD; Tato CM et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Effectiveness of Abbott BinaxNOW Rapid Antigen Test for Detection of SARS-CoV-2 Infections in Outbreak among Horse Racetrack Workers, California, USA.

Emerging infectious diseases
2021-09 | Journal article
Contributors: Surasi K; Cummings KJ; Hanson C; Morris MK; Salas M; Seftel D; Ortiz L; Thilakaratne R; Stainken C; Wadford DA
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California.

The Journal of infectious diseases
2021-07 | Journal article
Contributors: Villarino E; Deng X; Kemper CA; Jorden MA; Bonin B; Rudman SL; Han GS; Yu G; Wang C; Federman S et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Acute Fulminant Cerebral Edema: A Newly Recognized Phenotype in Children With Suspected Encephalitis.

Journal of the Pediatric Infectious Diseases Society
2021-04 | Journal article
Contributors: Krishnan P; Glenn OA; Samuel MC; Sheriff H; Foster-Barber A; Sejvar JJ; Roy-Burman A; Wadford DA; Preas CP; Tureen JH et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant.

Cell
2021-04 | Journal article
Contributors: Deng X; Garcia-Knight MA; Khalid MM; Servellita V; Wang C; Morris MK; Sotomayor-González A; Glasner DR; Reyes KR; Gliwa AS et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Transmission, infectivity, and antibody neutralization of an emerging SARS-CoV-2 variant in California carrying a L452R spike protein mutation

2021-03 | Preprint
Contributors: Deng X; Garcia-Knight MA; Khalid MM; Servellita V; Wang C; Morris MK; Sotomayor-González A; Glasner DR; Reyes KR; Gliwa AS et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood.

Science advances
2021-02 | Journal article
Contributors: Ng DL; Granados AC; Santos YA; Servellita V; Goldgof GM; Meydan C; Sotomayor-Gonzalez A; Levine AG; Balcerek J; Han LM et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR.

Journal of clinical microbiology
2020-12 | Journal article
Contributors: Vanaerschot M; Mann SA; Webber JT; Kamm J; Bell SM; Bell J; Hong SN; Nguyen MP; Chan LY; Bhatt KD et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Timely intervention and control of a novel coronavirus (COVID-19) outbreak at a large skilled nursing facility-San Francisco, California, 2020.

Infection control and hospital epidemiology
2020-12 | Journal article
Contributors: Karmarkar EN; Blanco I; Amornkul PN; DuBois A; Deng X; Moonan PK; Rubenstein BL; Miller DA; Kennedy I; Yu J et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by a widely-used RT-PCR assay

2020-08 | Preprint
Contributors: Vanaerschot M; Mann SA; Webber JT; Kamm J; Bell SM; Bell J; Hong SN; Nguyen MP; Chan LY; Bhatt KD et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Rotavirus Vaccination Coverage During a Rotavirus Outbreak Resulting in a Fatality at a Subacute Care Facility.

Journal of the Pediatric Infectious Diseases Society
2020-07 | Journal article
Contributors: Burke RM; Tate JE; Han GS; Quenelle R; Gautam R; Wadford DA; Bowen MD; Parashar UD
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.

Science (New York, N.Y.)
2020-06 | Journal article
Contributors: Deng X; Gu W; Federman S; du Plessis L; Pybus OG; Faria NR; Wang C; Yu G; Bushnell B; Pan CY et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Outbreak of Norovirus Illness Among Wildfire Evacuation Shelter Populations - Butte and Glenn Counties, California, November 2018.

MMWR. Morbidity and mortality weekly report
2020-05 | Journal article
Contributors: Karmarkar E; Jain S; Higa J; Fontenot J; Bertolucci R; Huynh T; Hammer G; Brodkin A; Thao M; Brousseau B et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

CRISPR-Cas12-based detection of SARS-CoV-2.

Nature biotechnology
2020-04 | Journal article
Contributors: Broughton JP; Deng X; Yu G; Fasching CL; Servellita V; Singh J; Miao X; Streithorst JA; Granados A; Sotomayor-Gonzalez A et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

2020-03 | Preprint
Contributors: Deng X; Gu W; Federman S; Plessis Ld; Pybus OG; Faria N; Wang C; Yu G; Pan C; Guevara H et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.

Nature microbiology
2020-03 | Journal article
Contributors: Deng X; Achari A; Federman S; Yu G; Somasekar S; Bártolo I; Yagi S; Mbala-Kingebeni P; Kapetshi J; Ahuka-Mundeke S et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Public Health Responses to COVID-19 Outbreaks on Cruise Ships - Worldwide, February-March 2020.

MMWR. Morbidity and mortality weekly report
2020-03 | Journal article
Contributors: Moriarty LF; Plucinski MM; Marston BJ; Kurbatova EV; Knust B; Murray EL; Pesik N; Rose D; Fitter D; Kobayashi M et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Rapid Detection of 2019 Novel Coronavirus SARS-CoV-2 Using a CRISPR-based DETECTR Lateral Flow Assay

2020-03 | Preprint
Contributors: Broughton JP; Deng X; Yu G; Fasching CL; Singh J; Streithorst J; Granados A; Sotomayor-Gonzalez A; Zorn K; Gopez A et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.

Nature microbiology
2020-01 | Journal article
Contributors: Deng X; Achari A; Federman S; Yu G; Somasekar S; Bártolo I; Yagi S; Mbala-Kingebeni P; Kapetshi J; Ahuka-Mundeke S et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

LB14. Cerebrospinal Fluid Profiling of the Human Host Response Reveals Species-Specific Enterovirus Biosignatures in Acute Flaccid Myelitis Cases

Open forum infectious diseases
2019-10 | Journal article
Contributors: Briggs B; Santos Y; Ramesh A; Grabherr M; Achari A; Yu G; Miller S; Miller S; Federman S; Arevalo S et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Nearly Complete Genome Sequence of an Echovirus 30 Strain from a Cluster of Aseptic Meningitis Cases in California, September 2017.

Microbiology resource announcements
2019-10 | Journal article
Contributors: Pan CY; Huynh T; Padilla T; Chen A; Ng TFF; Marine RL; Castro CJ; Nix WA; Wadford DA
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Pan-viral serology implicates enteroviruses in acute flaccid myelitis.

Nature medicine
2019-10 | Journal article
Contributors: Schubert RD; Hawes IA; Ramachandran PS; Ramesh A; Crawford ED; Pak JE; Wu W; Cheung CK; O'Donovan BD; Tato CM et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Serological and metagenomic interrogation of cerebrospinal fluid implicates enteroviruses in pediatric acute flaccid myelitis

2019-06 | Preprint
Contributors: Schubert RD; Hawes I; Ramachandran PS; Ramesh A; Crawford ED; Pak JE; Wu W; Cheung CK; O’Donovan BD; Tato CM et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Outbreak of Epidemic Keratoconjunctivitis Caused by Human Adenovirus Type D53 in an Eye Care Clinic - Los Angeles County, 2017.

MMWR. Morbidity and mortality weekly report
2018-12 | Journal article
Contributors: OYong K; Killerby M; Pan CY; Huynh T; Green NM; Wadford DA; Terashita D
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Genome Sequences of Rhinovirus Genotype C56 Detected in Three Patients with Acute Respiratory Illness, California, 2016 to 2017.

Microbiology resource announcements
2018-08 | Journal article
Contributors: Pan CY; Yagi S; Padilla T; Fei Fan Ng T; Marine RL; Nix WA; Wadford DA
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Three Rotavirus Outbreaks in the Postvaccine Era - California, 2017.

MMWR. Morbidity and mortality weekly report
2018-04 | Journal article
Contributors: Burke RM; Tate JE; Barin N; Bock C; Bowen MD; Chang D; Gautam R; Han G; Holguin J; Huynh T et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Whole-Genome Sequence of Human Rhinovirus C47, Isolated from an Adult Respiratory Illness Outbreak in Butte County, California, 2017.

Genome announcements
2018-02 | Journal article
Contributors: Pan CY; Padilla T; Yagi S; Lewis LS; Ng TFF; Marine RL; Nix WA; Wadford DA
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Serologic (Antibody Detection) Methods

Clinical Virology Manual
2016-04 | Other
Contributors: Dongxiang Xia; Debra A. Wadford; Christopher P. Preas; David P. Schnurr
Source: Self-asserted source
Debra A. Wadford via Crossref Metadata Search

Acute Flaccid Myelitis of Unknown Etiology in California, 2012-2015.

JAMA
2015-12 | Journal article
Contributors: Van Haren K; Ayscue P; Waubant E; Clayton A; Sheriff H; Yagi S; Glenn-Finer R; Padilla T; Strober JB; Aldrovandi G et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Laboratory Testing for Middle East Respiratory Syndrome Coronavirus, California, USA, 2013-2014.

Emerging infectious diseases
2015-09 | Journal article
Contributors: Shahkarami M; Yen C; Glaser C; Xia D; Watt J; Wadford DA
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study.

The Lancet. Infectious diseases
2015-03 | Journal article
Contributors: Greninger AL; Naccache SN; Messacar K; Clayton A; Yu G; Somasekar S; Federman S; Stryke D; Anderson C; Yagi S et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Oseltamivir-resistant influenza A(H1N1)pdm09 viruses, United States, 2013-14.

Emerging infectious diseases
2015-01 | Journal article
Contributors: Okomo-Adhiambo M; Fry AM; Su S; Nguyen HT; Elal AA; Negron E; Hand J; Garten RJ; Barnes J; Xiyan X et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.

Genome research
2014-06 | Journal article
Contributors: Naccache SN; Federman S; Veeraraghavan N; Zaharia M; Lee D; Samayoa E; Bouquet J; Greninger AL; Luk KC; Enge B et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Hantavirus infections among overnight visitors to Yosemite National Park, California, USA, 2012.

Emerging infectious diseases
2014-03 | Journal article
Contributors: Núñez JJ; Fritz CL; Knust B; Buttke D; Enge B; Novak MG; Kramer V; Osadebe L; Messenger S; Albariño CG et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central

Variation of human immunodeficiency virus type-1 reverse transcriptase within the simian immunodeficiency virus genome of RT-SHIV.

PloS one
2014-01 | Journal article
Contributors: Wadford DA; Kauffman RC; Deere JD; Aoki ST; Stanton RA; Higgins J; Van Rompay KK; Villalobos A; Nettles JH; Schinazi RF et al.
Source: Self-asserted source
Debra A. Wadford via Europe PubMed Central
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