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Small conformational changes in IgG1 detected as acidic charge variants by cation exchange chromatography

Analytical Biochemistry
2023-11 | Journal article
DOI: 10.1016/j.ab.2023.115302
Contributors: Masakazu Fukuda; Melissa A. Graewert; Cy M. Jeffries; Dmitri I. Svergun; Tadao Yamazaki; Akiko Koga; Yuji Yamanaka
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Crossref

Crosstalk between regulatory elements in disordered TRPV4 N-terminus modulates lipid-dependent channel activity

Nature Communications
2023-07-13 | Journal article | Author
DOI: 10.1038/s41467-023-39808-4
Part of ISSN: 2041-1723
Contributors: Benedikt Goretzki; Christoph Wiedemann; Brett McCray; Stefan L. Schaefer; Jasmin Jansen; Frederike Tebbe; Sarah-Ana Mitrovic; Julia Nöth; Ainara Claveras Cabezudo; Jack K. Donohue et al.
Source: Self-asserted source
0000-0002-8718-7343

Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions

Nature Methods
2023-07-03 | Journal article | Author
DOI: 10.1038/s41592-023-01915-x
Part of ISSN: 1548-7091
Part of ISSN: 1548-7105
Contributors: Bálint Mészáros; András Hatos; Nicolas Palopoli; Federica Quaglia; Edoardo Salladini; Kim Van Roey; Haribabu Arthanari; Zsuzsanna Dosztányi; Isabella C. Felli; Patrick D. Fischer et al.
Source: Self-asserted source
0000-0002-8718-7343

The preference signature of the SARS-CoV-2 Nucleocapsid NTD for its 5’-genomic RNA elements

Nature Communications
2023-06-07 | Journal article
DOI: 10.1038/s41467-023-38882-y
Contributors: Sophie Marianne Korn; Karthikeyan Dhamotharan; Cy M. Jeffries; Andreas Schlundt
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Crossref

Structure of the N-terminal didomain d1_d2 of the Thrombospondin type-1 domain-containing 7A

2023-05-03 | Preprint
DOI: 10.1101/2023.05.03.539264
Contributors: Alice Bochel; Simon Arnold Mortensen; Larissa Seifert; Felicitas E. Hengel; Cy M. Jeffries; Grzegorz Chojnowski; Oliver Kretz; Tobias B. Huber; Nicola Tomas; Matthias Wilmanns
Source: Self-asserted source
0000-0002-8718-7343

X‐ray structure and function of fibronectin domains two and three of the neural cell adhesion molecule L1

The FASEB Journal
2023-03 | Journal article
DOI: 10.1096/fj.202201511R
Contributors: Gabriela Guédez; Gabriele Loers; Cy M. Jeffries; Sandra Kozak; Rob Meijers; Dmitri I. Svergun; Melitta Schachner; Christian Löw
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Crossref

Conformational multiplicity of bacterial ferric binding protein revealed by small angle x-ray scattering and molecular dynamics calculations

The Journal of Chemical Physics
2023-02-28 | Journal article
DOI: 10.1063/5.0136558
Contributors: Goksin Liu; Erhan Ekmen; Farzaneh Jalalypour; Haydyn D. T. Mertens; Cy M. Jeffries; Dmitri Svergun; Ali Rana Atilgan; Canan Atilgan; Zehra Sayers
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Crossref

2023 update of template tables for reporting biomolecular structural modelling of small-angle scattering data

Acta Crystallographica Section D Structural Biology
2023-02-01 | Journal article
DOI: 10.1107/S2059798322012141
Contributors: Jill Trewhella; Cy M. Jeffries; Andrew E. Whitten
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Crossref

Asymmetric horseshoe-like assembly of peroxisomal yeast oxalyl-CoA synthetase

Biological Chemistry
2023-01-26 | Journal article
DOI: 10.1515/hsz-2022-0273
Part of ISSN: 1431-6730
Part of ISSN: 1437-4315
Contributors: Jérôme Bürgi; Pascal Lill; Evdokia-Anastasia Giannopoulou; Cy M. Jeffries; Grzegorz Chojnowski; Stefan Raunser; Christos Gatsogiannis; Matthias Wilmanns
Source: Self-asserted source
0000-0002-8718-7343

Data analysis and modeling of small-angle neutron scattering data with contrast variation from bio-macromolecular complexes

Methods in Enzymology
2022 | Book chapter
DOI: 10.1016/bs.mie.2022.09.015
Part of ISSN: 0076-6879
Contributors: 0000-0002-8718-7343; Andrew E. Whitten; Cy M. Jeffries
Source: Self-asserted source
0000-0002-8718-7343

Technical considerations for small-angle neutron scattering from biological macromolecules in solution: Cross sections, contrasts, instrument setup and measurement

Small Angle Scattering Part A: Methods for Structural Investigation
2022 | Book chapter
DOI: 10.1016/bs.mie.2022.08.008
Part of ISBN: 9780323991797
Part of ISSN: 0076-6879
Contributors: 0000-0002-8718-7343; Zuzanna Pietras; Kathleen Wood; Andrew E. Whitten; Cy M. Jeffries
Source: Self-asserted source
0000-0002-8718-7343

Intrinsically disordered plant protein PARCL colocalizes with RNA in phase-separated condensates whose formation can be regulated by mutating the PLD

Journal of Biological Chemistry
2022-12 | Journal article
DOI: 10.1016/j.jbc.2022.102631
Contributors: Anna Ostendorp; Steffen Ostendorp; Yuan Zhou; Zoé Chaudron; Lukas Wolffram; Khadija Rombi; Linn von Pein; Sven Falke; Cy M. Jeffries; Dmitri I. Svergun et al.
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Crossref

Production and characterisation of modularly deuterated UBE2D1–Ub conjugate by small angle neutron and X-ray scattering

European Biophysics Journal
2022-12 | Journal article
DOI: 10.1007/s00249-022-01620-1
Part of ISSN: 0175-7571
Part of ISSN: 1432-1017
Contributors: 0000-0002-8718-7343; Zuzanna Pietras; Anthony P. Duff; Vivian Morad; Kathleen Wood; Cy M. Jeffries; Maria Sunnerhagen
Source: Self-asserted source
0000-0002-8718-7343
grade
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Structure and dynamics of the von Willebrand Factor C6 domain

Journal of Structural Biology
2022-12 | Journal article
DOI: 10.1016/j.jsb.2022.107923
Part of ISSN: 1047-8477
Contributors: 0000-0002-8718-7343; Po-chia Chen; Fabian Kutzki; Angelika Mojzisch; Bernd Simon; Emma-Ruoqi Xu; Camilo Aponte-Santamaría; Kai Horny; Cy Jeffries; Reinhard Schneppenheim et al.
Source: Self-asserted source
0000-0002-8718-7343

Determinants of receptor tyrosine phosphatase homophilic adhesion: structural comparison of PTPRK and PTPRM extracellular domains

Journal of Biological Chemistry
2022-11 | Journal article
DOI: 10.1016/j.jbc.2022.102750
Part of ISSN: 0021-9258
Contributors: 0000-0002-8718-7343; Iain M Hay; Maria Shamin; Eve Caroe; Ahmed S.A. Mohammed; Dmitri Svergun; Cy M. Jeffries; Stephen Graham; Hayley J Sharpe; Janet E. Deane
Source: Self-asserted source
0000-0002-8718-7343

Herpes simplex virus 1 protein pUL21 alters ceramide metabolism by activating the interorganelle transport protein CERT

Journal of Biological Chemistry
2022-11 | Journal article
DOI: 10.1016/j.jbc.2022.102589
Contributors: Tomasz H. Benedyk; Viv Connor; Eve R. Caroe; Maria Shamin; Dmitri I. Svergun; Janet E. Deane; Cy M. Jeffries; Colin M. Crump; Stephen C. Graham
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Crossref

Recombinant AcnB, NrdR and RibD of Acinetobacter baumannii and their potential interaction with DNA adenine methyltransferase AamA

Protein Expression and Purification
2022-11 | Journal article
DOI: 10.1016/j.pep.2022.106134
Part of ISSN: 1046-5928
Contributors: 0000-0002-8718-7343; Kristin Weber; Joerg Doellinger; Cy M. Jeffries; Gottfried Wilharm
Source: Self-asserted source
0000-0002-8718-7343

Substrate Induced Movement of the Metal Cofactor between Active and Resting State

Angewandte Chemie International Edition
2022-11-09 | Journal article
DOI: 10.1002/anie.202213338
Part of ISSN: 1433-7851
Part of ISSN: 1521-3773
Contributors: 0000-0002-8718-7343; Stefan R. Marsden; Hein Jakob Wijma; Michael K. F. Mohr; Inês Justo; Peter-Leon Hagedoorn; Jesper Laustsen; Cy M. Jeffries; Dmitri Svergun; Luuk Mestrom et al.
Source: Self-asserted source
0000-0002-8718-7343

A round-robin approach provides a detailed assessment of biomolecular small-angle scattering data reproducibility and yields consensus curves for benchmarking

Acta Crystallographica Section D Structural Biology
2022-11-01 | Journal article | Author
DOI: 10.1107/s2059798322009184
Part of ISSN: 2059-7983
Contributors: Jill Trewhella; Patrice Vachette; Jan Bierma; Clement Blanchet; Emre Brookes; Srinivas Chakravarthy; Leonie Chatzimagas; Thomas E. Cleveland; Nathan Cowieson; Ben Crossett et al.
Source: Self-asserted source
0000-0002-8718-7343

EFAMIX , a tool to decompose inline chromatography SAXS data from partially overlapping components

Protein Science
2021-11-22 | Journal article
DOI: 10.1002/pro.4237
PMID: 34767272
Source: Self-asserted source
0000-0002-8718-7343
grade
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Small-angle X-ray and neutron scattering

Nature Reviews Methods Primers
2021-10-12 | Journal article
DOI: 10.1038/s43586-021-00064-9
Contributors: Cy M. Jeffries; Jan Ilavsky; Anne Martel; Stephan Hinrichs; Andreas Meyer; Jan Skov Pedersen; Anna V. Sokolova; Dmitri I. Svergun
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Crossref

pUL21 is a viral phosphatase adaptor that promotes herpes simplex virus replication and spread.

PLoS pathogens
2021-08 | Journal article
DOI: 10.1371/journal.ppat.1009824
PMID: 34398933
PMC: PMC8389370
Contributors: Benedyk TH; Muenzner J; Connor V; Han Y; Brown K; Wijesinghe KJ; Zhuang Y; Colaco S; Stoll GA; Tutt OS et al.
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

ASAXS measurements on ferritin and apoferritin at the bioSAXS beamline P12 (PETRA III, DESY)

Journal of Applied Crystallography
2021-06-01 | Journal article
DOI: 10.1107/S1600576721003034
PMID: 34188614
PMC: PMC8202030
Source: Self-asserted source
0000-0002-8718-7343
grade
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Order from disorder in the sarcomere: FATZ forms a fuzzy but tight complex and phase-separated condensates with α-actinin

Science Advances
2021-05 | Journal article
DOI: 10.1126/sciadv.abg7653
PMID: 34049882
PMC: PMC8163081
Source: Self-asserted source
0000-0002-8718-7343
grade
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Comment on the Optimal Parameters to Derive Intrinsically Disordered Protein Conformational Ensembles from Small-Angle X-ray Scattering Data Using the Ensemble Optimization Method.

Journal of chemical theory and computation
2021-03 | Journal article
DOI: 10.1021/acs.jctc.1c00014
PMID: 33725442
Contributors: Sagar A; Jeffries CM; Petoukhov MV; Svergun DI; Bernadó P
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central
grade
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<i>ATSAS 3.0</i>: expanded functionality and new tools for small-angle scattering data analysis.

Journal of applied crystallography
2021-02 | Journal article
DOI: 10.1107/s1600576720013412
PMID: 33833657
PMC: PMC7941305
Contributors: Manalastas-Cantos K; Konarev PV; Hajizadeh NR; Kikhney AG; Petoukhov MV; Molodenskiy DS; Panjkovich A; Mertens HDT; Gruzinov A; Borges C et al.
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

Hydration in aqueous osmolyte solutions: the case of TMAO and urea

Physical Chemistry Chemical Physics
2020 | Journal article
DOI: 10.1039/C9CP06785J
PMID: 32405633
Source: Self-asserted source
0000-0002-8718-7343
grade
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Selection, biophysical and structural analysis of synthetic nanobodies that effectively neutralize SARS-CoV-2.

Nature communications
2020-11 | Journal article
DOI: 10.1038/s41467-020-19204-y
PMID: 33149112
PMC: PMC7642358
Contributors: Custódio TF; Das H; Sheward DJ; Hanke L; Pazicky S; Pieprzyk J; Sorgenfrei M; Schroer MA; Gruzinov AY; Jeffries CM et al.
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

Adding Size Exclusion Chromatography (SEC) and Light Scattering (LS) Devices to Obtain High-Quality Small Angle X-Ray Scattering (SAXS) Data

Crystals
2020-10-27 | Journal article
DOI: 10.3390/cryst10110975
CTX: C8091
Source: Self-asserted source
0000-0002-8718-7343
grade
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Rapid screening of in cellulo grown protein crystals via a small-angle X-ray scattering/X-ray powder diffraction synergistic approach

Journal of Applied Crystallography
2020-10-01 | Journal article
DOI: 10.1107/S1600576720010687
PMID: 33117106
PMC: PMC7534541
Source: Self-asserted source
0000-0002-8718-7343
grade
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Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR.

Nucleic acids research
2020-09 | Journal article
DOI: 10.1093/nar/gkaa697
PMID: 32974652
PMC: PMC7515732
Contributors: Osz J; McEwen AG; Bourguet M; Przybilla F; Peluso-Iltis C; Poussin-Courmontagne P; Mély Y; Cianférani S; Jeffries CM; Svergun DI et al.
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

RovC - a novel type of hexameric transcriptional activator promoting type VI secretion gene expression

PLOS Pathogens
2020-09-23 | Journal article
DOI: 10.1371/journal.ppat.1008552
PMID: 32966346
PMC: PMC7535981
Source: Self-asserted source
0000-0002-8718-7343
grade
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Anomeric Selectivity of Trehalose Transferase with Rare l-Sugars.

ACS catalysis
2020-07 | Journal article
DOI: 10.1021/acscatal.0c02117
PMID: 32953231
PMC: PMC7493220
Contributors: Mestrom L; Marsden SR; van der Eijk H; Laustsen JU; Jeffries CM; Svergun DI; Hagedoorn PL; Bento I; Hanefeld U
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

Structure of a collagen VI α3 chain VWA domain array: adaptability and functional implications of myopathy causing mutations.

The Journal of biological chemistry
2020-07 | Journal article
DOI: 10.1074/jbc.ra120.014865
PMID: 32719005
PMC: PMC7476709
Contributors: Solomon-Degefa H; Gebauer JM; Jeffries CM; Freiburg CD; Meckelburg P; Bird LE; Baumann U; Svergun DI; Owens RJ; Werner JM et al.
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

The basics of small-angle neutron scattering (SANS for new users of structural biology)

EPJ web of conferences
2020-07 | Book chapter
DOI: 10.1051/epjconf/202023603001
CTX: C8085
Source: Self-asserted source
0000-0002-8718-7343
grade
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Structure-Based Identification and Functional Characterization of a Lipocalin in the Malaria Parasite Plasmodium falciparum.

Cell reports
2020-06 | Journal article
DOI: 10.1016/j.celrep.2020.107817
PMID: 32579913
Contributors: Burda PC; Crosskey T; Lauk K; Zurborg A; Söhnchen C; Liffner B; Wilcke L; Pietsch E; Strauss J; Jeffries CM et al.
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

Insights into herpesvirus assembly from the structure of the pUL7:pUL51 complex.

eLife
2020-05 | Journal article
DOI: 10.7554/elife.53789
PMID: 32391791
PMC: PMC7289601
Contributors: Butt BG; Owen DJ; Jeffries CM; Ivanova L; Hill CH; Houghton JW; Ahmed MF; Antrobus R; Svergun DI; Welch JJ et al.
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

Tetrameric Structures of Inorganic CBS-Pyrophosphatases from Various Bacterial Species Revealed by Small-Angle X-ray Scattering in Solution

Biomolecules
2020-04-07 | Journal article
DOI: 10.3390/biom10040564
PMID: 32272694
PMC: PMC7226116
Source: Self-asserted source
0000-0002-8718-7343
grade
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An intrinsically disordered proteins community for ELIXIR.

F1000Research
2019-10 | Journal article
DOI: 10.12688/f1000research.20136.1
PMID: 31824649
PMC: PMC6880265
Contributors: Davey NE; Babu MM; Blackledge M; Bridge A; Capella-Gutierrez S; Dosztanyi Z; Drysdale R; Edwards RJ; Elofsson A; Felli IC et al.
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

SASBDB: Towards an automatically curated and validated repository for biological scattering data.

Protein science : a publication of the Protein Society
2019-10 | Journal article
DOI: 10.1002/pro.3731
PMID: 31576635
PMC: PMC6933840
Source: Self-asserted source
0000-0002-8718-7343
grade
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The dimeric ectodomain of the alkali-sensing insulin receptor-related receptor (ectoIRR) has a droplike shape.

The Journal of biological chemistry
2019-10 | Journal article
DOI: 10.1074/jbc.ra119.010390
PMID: 31615897
PMC: PMC6879334
Source: Self-asserted source
0000-0002-8718-7343
grade
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The quaternary structure of insulin glargine and glulisine under formulation conditions

Biophysical Chemistry
2019-10 | Journal article
DOI: 10.1016/j.bpc.2019.106226
Part of ISSN: 0301-4622
PMID: 31376619
Source: Self-asserted source
0000-0002-8718-7343

Solution Structure, Self-Assembly, and Membrane Interactions of the Matrix Protein from Newcastle Disease Virus at Neutral and Acidic pH.

Journal of virology
2019-03-05 | Journal article
DOI: 10.1128/jvi.01450-18
PMID: 30567981
PMC: PMC6401449
Source: Self-asserted source
0000-0002-8718-7343

Hydration in aqueous solutions of ectoine and hydroxyectoine

Physical Chemistry Chemical Physics
2018 | Journal article
DOI: 10.1039/C8CP05308A
PMID: 30379162
Source: Self-asserted source
0000-0002-8718-7343
grade
Preferred source (of 2)‎

Consensus Bayesian assessment of protein molecular mass from solution X-ray scattering data

Scientific Reports
2018-12 | Journal article
DOI: 10.1038/s41598-018-25355-2
PMC: PMC5940760
PMID: 29739979
Source: Self-asserted source
0000-0002-8718-7343
grade
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Machine Learning Methods for X-Ray Scattering Data Analysis from Biomacromolecular Solutions.

Biophysical journal
2018-06 | Journal article
DOI: 10.1016/j.bpj.2018.04.018
PMID: 29874600
PMC: PMC6129182
Source: Self-asserted source
0000-0002-8718-7343
grade
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Recombinant production of A1S_0222 from Acinetobacter baumannii ATCC 17978 and confirmation of its DNA-(adenine N6)-methyltransferase activity.

Protein expression and purification
2018-06 | Journal article
DOI: 10.1016/j.pep.2018.06.009
PMID: 29908915
Contributors: Blaschke U; Suwono B; Zafari S; Ebersberger I; Skiebe E; Jeffries CM; Svergun DI; Wilharm G
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

Smaller capillaries improve the small-angle X-ray scattering signal and sample consumption for biomacromolecular solutions.

Journal of synchrotron radiation
2018-06 | Journal article
DOI: 10.1107/S1600577518007907
PMID: 29979172
PMC: PMC6038601
Contributors: Schroer MA; Blanchet CE; Gruzinov AY; Gräwert MA; Brennich ME; Hajizadeh NR; Jeffries CM; Svergun DI
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

Functional interaction of low-homology FRPs from different cyanobacteria with Synechocystis OCP.

Biochimica et biophysica acta
2018-05 | Journal article
DOI: 10.1016/j.bbabio.2018.03.001
PMID: 29524381
Contributors: Slonimskiy YB; Maksimov EG; Lukashev EP; Moldenhauer M; Jeffries CM; Svergun DI; Friedrich T; Sluchanko NN
Source: Self-asserted source
0000-0002-8718-7343 via Europe PubMed Central

Influenza virus Matrix Protein M1 preserves its conformation with pH, changing multimerization state at the priming stage due to electrostatics

Scientific Reports
2017 | Journal article
DOI: 10.1038/s41598-017-16986-y
Part of ISSN: 2045-2322
PMC: PMC5711849
PMID: 29196731
Source: Self-asserted source
0000-0002-8718-7343
grade
Preferred source (of 2)‎
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