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Institute for Medical Bioinformatics and Systems Medicine

Other IDs

ResearcherID: B-5866-2019
Loop profile: 841608
Scopus Author ID: 55851942559

Keywords

Multi-omics integration, Transcriptomics, Proteomics, Metabolomics, Cancer biology, GBM

Countries

Germany

Activities

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Employment (4)

Albert-Ludwigs-Universität Freiburg: Freiburg im Breisgau, Baden-Württemberg, DE

2022-10-01 to present | Senior Research Associate (Medical Bioinformatics and Systems Medicine)
Employment
Source: Self-asserted source
Sajib Chakraborty

University of Dhaka: Dhaka, Dhaka, BD

2016-12-26 to 2022-09-23 | Teaching and Research Associate (Biochemistry and Molecular Biology)
Employment
Source: Self-asserted source
Sajib Chakraborty

German Cancer Research Center: Heidelberg, Heidelberg, DE

2012-02-07 to 2016-12-15 | Research Fellow, Graduate Student (Division of Systems Biology of Signal Transduction)
Employment
Source: Self-asserted source
Sajib Chakraborty

Imperial College London: London, GB

2009 to 2010 | Research Student (Msc) (Clinical Science Centre)
Employment
Source: Self-asserted source
Sajib Chakraborty

Education and qualifications (5)

German Cancer Research Center (DKFZ): Heidelberg, Baden-Württemberg, DE

2012-02-08 to 2016-12-23 | Phd (Division of systems biology of signal transduction )
Education
Source: Self-asserted source
Sajib Chakraborty

University College London: London, London, GB

2009-09-01 to 2010-09-30 | MSc (Infection and Immunity)
Education
Source: Self-asserted source
Sajib Chakraborty

Imperial College London: London, London, GB

2009-12-01 to 2010-06-10 | Proteomics (Clinical science center)
Education
Source: Self-asserted source
Sajib Chakraborty

University of Dhaka: Dhaka, BD

2005-01-01 to 2006-06-10 | MS (Biochemistry and Molecular Biology)
Education
Source: Self-asserted source
Sajib Chakraborty

University of Dhaka: Dhaka, BD

2002-03-05 to 2005-12-01 | BSc (Biochemistry and Molecular Biology)
Education
Source: Self-asserted source
Sajib Chakraborty

Professional activities (7)

American Society of Human Genetics: Bethesda, Maryland, US

2019-10-15 to present | Developing country membership
Membership
Source: Self-asserted source
Sajib Chakraborty

Bangladesh Academy of Sciences: Dhaka, BD

2019-05-05 to present | Young academic
Service
Source: Self-asserted source
Sajib Chakraborty

Coomonwealth organization: London, GB

2009-08-07 to present | Commonwealth Alumni Membership
Service
Source: Self-asserted source
Sajib Chakraborty

American Society of Human Genetics: Bethesda, Maryland, US

2019-10-15 | Developing country award
Distinction
Source: Self-asserted source
Sajib Chakraborty

International Union of Biochemistry and Molecular Biology: Calgary, Alberta, CA

2018-06-03 | Young Scientists Program award for best oral and poster presentation
Distinction
Source: Self-asserted source
Sajib Chakraborty

Helmholtz Association: Heidelberg , DE

2012-02-07 | helmholtz graduate scholarship
Distinction
Source: Self-asserted source
Sajib Chakraborty

Commonwealth Foundation: London, GB

2009-06-06 | Commonwealth scholarship
Distinction
Source: Self-asserted source
Sajib Chakraborty

Funding (3)

Capacity building initiative: Establishment of a bioinformatics core facility

2020-02 to 2022-01 | Grant
Information and Communication Ministry, Bangladesh (Dhaka, BD)
Source: Self-asserted source
Sajib Chakraborty

Investigation of molecular biomarkers for early detection, prognosis and treatment of prostate cancer in Bangladeshi population using advanced Multi-Omics approaches

2019-03 to 2021-02 | Grant
Ministry of Science and Technology, Bangladesh (Dhaka, BD)
Source: Self-asserted source
Sajib Chakraborty

Efficacy and Safety of Eltrombopag to correct thrombocytopenia in moderate to severe dengue patients- a Phase II Randomized Controlled Clinical Trial

2019-03 to 2020-02 | Grant
Incepta Pharmaceuticals Limited, Bangladesh (Dhaka, BD)
URL: https://apps.who.int/trialsearch/Trial2.aspx?TrialID=SLCTR/2019/037
Source: Self-asserted source
Sajib Chakraborty

Works (38)

Wireless electrical–molecular quantum signalling for cancer cell apoptosis

Nature Nanotechnology
2024-01 | Journal article
DOI: 10.1038/s41565-023-01496-y
Contributors: Akhil Jain; Jonathan Gosling; Shaochuang Liu; Haowei Wang; Eloise M. Stone; Sajib Chakraborty; Padma-Sheela Jayaraman; Stuart Smith; David B. Amabilino; Mark Fromhold et al.
Source: check_circle
Crossref

A transcriptome study of p53-pathway related prognostic gene signature set in bladder cancer

Heliyon
2023-10 | Journal article
DOI: 10.1016/j.heliyon.2023.e21058
Contributors: Safayat Mahmud Khan; Tonmoy Das; Sajib Chakraborty; Abdul Matin Anamur Rashid Choudhury; Howlader Fazlul Karim; Munshi Akid Mostofa; Hasib Uddin Ahmed; Md Akmal Hossain; Florence Le Calvez-Kelm; Md Ismail Hosen et al.
Source: check_circle
Crossref

Spatially resolved transcriptomic profiles reveal unique defining molecular features of infiltrative 5ALA-metabolizing cells associated with glioblastoma recurrence

Genome Medicine
2023-07-11 | Journal article | Author
DOI: 10.1186/s13073-023-01207-1
Part of ISSN: 1756-994X
Contributors: Geoffroy Andrieux; Tonmoy Das; Michaela Griffin; Jakob Straehle; Simon M. L. Paine; Jürgen Beck; Melanie Boerries; Dieter H. Heiland; Stuart J. Smith; Ruman Rahman et al.
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Evaluating the seroprevalence of SARS-CoV-2 IgG in five different districts of Bangladesh. A seroepidemiological study

Journal of Infection and Public Health
2023-06 | Journal article
DOI: 10.1016/j.jiph.2023.04.013
Part of ISSN: 1876-0341
Contributors: Abdullah Al Saba; Mohammad Sayem; Razoan Al Rimon; Mousumi Sanyal; Sajib Chakraborty; Md Arifur Rahman; Md Mizanur Rahman; A.H.M. Nurun Nabi
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Dynamic antibody response in SARS-CoV-2 infected patients and COVID-19 vaccine recipients alongside vaccine effectiveness in comorbid and multimorbid groups

Heliyon
2023-05 | Journal article | Author
DOI: 10.1016/j.heliyon.2023.e16349
Part of ISSN: 2405-8440
Contributors: Depro Das; Fahmida Khanam Raha; Khondekar Mustaq Adnan; Md Rubayet Siraj; Mariam Jamila Shapla; Farzana Shumy; Md Emdadul Haque; Monwar Hasanat Khan; Susmita Sanyal; Md Ismail Hosen et al.
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Evaluation of the proteomic landscape of HPV E7‑induced alterations in human keratinocytes reveal therapeutically relevant pathways for cervical cancer

Molecular Medicine Reports
2023-01-09 | Journal article
DOI: 10.3892/mmr.2023.12933
Part of ISSN: 1791-2997
Part of ISSN: 1791-3004
Contributors: Sivasangkary Gandhi; Muhammad Fazril Mohamad Razif; Shatrah Othman; Sajib Chakraborty; Nurshamimi Nor Rashid
Source: Self-asserted source
Sajib Chakraborty

The Role of miRNAs in Gliomas in Response to Hypoxia

Neuro-Oncology
2022-10-01 | Journal article
DOI: 10.1093/neuonc/noac200.041
Part of ISSN: 1522-8517
Part of ISSN: 1523-5866
Contributors: Louise Smith; Sajib Chakraborty; Anbarasu Lourdusamy; Alan McIntyre; Stuart Smith
Source: Self-asserted source
Sajib Chakraborty

Erythropoietin-driven dynamic proteome adaptations during erythropoiesis prevent iron overload in the developing embryo

Cell Reports
2022-09 | Journal article | Conceptualization, Data curation, Formal analysis, Investigation
DOI: 10.1016/j.celrep.2022.111360
Part of ISSN: 2211-1247
Contributors: Sajib Chakraborty
Source: Self-asserted source
Sajib Chakraborty

Most frequently harboured missense variants of hACE2 across different populations exhibit varying patterns of binding interaction with spike glycoproteins of emerging SARS-CoV-2 of different lineages

Computers in Biology and Medicine
2022-09 | Journal article
DOI: 10.1016/j.compbiomed.2022.105903
Contributors: Anika Tahsin; Rubaiat Ahmed; Piyash Bhattacharjee; Maisha Adiba; Abdullah Al Saba; Tahirah Yasmin; Sajib Chakraborty; A.K.M. Mahbub Hasan; A.H.M. Nurun Nabi
Source: check_circle
Crossref

Lipoprotein Deprivation Reveals a Cholesterol-Dependent Therapeutic Vulnerability in Diffuse Glioma Metabolism

Cancers
2022-08-11 | Journal article
DOI: 10.3390/cancers14163873
Contributors: James Wood; Salah Abdelrazig; Sergey Evseev; Catherine Ortori; Marcos Castellanos-Uribe; Sean T. May; David A. Barrett; Mohammed Diksin; Sajib Chakraborty; Dong-Hyun Kim et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

The polymorphic landscape analysis of GATA1 exons uncovered the genetic variants associated with higher thrombocytopenia in dengue patients

PLOS Neglected Tropical Diseases
2022-06 | Journal article
DOI: 10.1371/journal.pntd.0010537
Part of ISSN: 1935-2735
Contributors: Razoan Al Rimon; Mohammad Sayem; Saruar Alam; Abdullah Al Saba; Mousumi Sanyal; Md. Robed Amin; Ahmedul Kabir; Sajib Chakraborty; A. H. M. Nurun Nabi; Mohamed Gomaa Kamel
Source: Self-asserted source
Sajib Chakraborty via Crossref Metadata Search

Prediction of Putative Potential Sirnas for Inhibiting SARS-CoV-2 Strains, Including Variants of Concern and Interest

Future Microbiology
2022-04 | Journal article
DOI: 10.2217/fmb-2021-0130
Contributors: Abdullah Al Saba; Maisha Adiba; Sajib Chakraborty; AHM Nurun Nabi
Source: check_circle
Crossref

In silico characterization of coding and non-coding SNPs of the androgen receptor gene

Informatics in Medicine Unlocked
2021 | Journal article
DOI: 10.1016/j.imu.2021.100556
Part of ISSN: 2352-9148
Contributors: Maisha Adiba; Tonmoy Das; Anik Paul; Ashish Das; Sajib Chakraborty; Md Ismail Hosen; A.H.M. Nurun Nabi
Source: Self-asserted source
Sajib Chakraborty via Crossref Metadata Search

Editorial: Integration of Multi-Omics Techniques in Cancer

Frontiers in Genetics
2021-08-09 | Journal article
DOI: 10.3389/fgene.2021.733965
Part of ISSN: 1664-8021
Source: Self-asserted source
Sajib Chakraborty

Spatial-transcriptomics reveals unique defining molecular features of 5-aminolevulinic acid+ infiltrative tumor cells associated with glioblastoma recurrence and poor survival

2021-08-04 | Other
DOI: 10.21203/rs.3.rs-780275/v1
Contributors: Geoffroy Andrieux; Tonmoy Das; Michaela Griffin; Melanie Boerries; Stuart Smith; Ruman Rahman; Sajib Chakraborty
Source: check_circle
Crossref

An in-depth in silico and immunoinformatics approach for designing a potential multi-epitope construct for the effective development of vaccine to combat against SARS-CoV-2 encompassing variants of concern and interest

Computers in Biology and Medicine
2021-07 | Journal article
DOI: 10.1016/j.compbiomed.2021.104703
Part of ISSN: 0010-4825
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Spatial-transcriptomics reveals unique defining molecular features of fluorescence-sorted 5-aminolevulinic acid+ infiltrative tumor cells associated with glioblastoma recurrence and poor survival

2021-05-27 | Other
DOI: 10.1101/2021.05.27.445977
Contributors: Geoffroy Andrieux; Tonmoy Das; Michaela Griffin; Stuart J. Smith; Ruman Rahman; Sajib Chakraborty
Source: check_circle
Crossref

Harnessing personalized nutrigenomics for cancer prevention and treatment through diet-gene interaction

Functional Foods in Cancer Prevention and Therapy
2020 | Book chapter
DOI: 10.1016/b978-0-12-816151-7.00019-3
Part of ISBN: 9780128161517
Source: Self-asserted source
Sajib Chakraborty

Alteration of Proteotranscriptomic Landscape Reveals the Transcriptional Regulatory Circuits Controlling Key-Signaling Pathways and Metabolic Reprogramming During Tumor Evolution.

Frontiers in cell and developmental biology
2020-12-15 | Journal article
DOI: 10.3389/fcell.2020.586479
PMID: 33384992
PMC: PMC7769845
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Investigation of the efficacy and safety of eltrombopag to correct thrombocytopenia in moderate to severe dengue patients - a phase II randomized controlled clinical trial.

EClinicalMedicine
2020-11-21 | Journal article
DOI: 10.1016/j.eclinm.2020.100624
PMID: 33294822
PMC: PMC7691733
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Integration of Online Omics-Data Resources for Cancer Research.

Frontiers in genetics
2020-10-23 | Journal article
DOI: 10.3389/fgene.2020.578345
PMID: 33193699
PMC: PMC7645150
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Identification of Interleukin1β as an Amplifier of Interferon alpha-induced Antiviral Responses

PLOS Pathogens
2020-10-01 | Journal article
DOI: 10.1371/journal.ppat.1008461
Part of ISSN: 1553-7374
Source: Self-asserted source
Sajib Chakraborty

Harnessing the tissue and plasma lncRNA-peptidome to discover peptide-based cancer biomarkers.

Scientific reports
2019-08-23 | Journal article
DOI: 10.1038/s41598-019-48774-1
PMID: 31444383
PMC: PMC6707329
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

A Dynamic Mathematical Modeling Revelation about the Impact of Vaccination on Hepatitis B Virus-induced Infection and Death Rate in Bangladesh.

Euroasian journal of hepato-gastroenterology
2019-07 | Journal article
DOI: 10.5005/jp-journals-10018-1303
PMID: 32117696
PMC: PMC7047315
Contributors: Chakraborty S; Chakravorty R; Alam S; Kabir Y; Mahtab M; Islam MA; Yusuf MAK; Raihan R; Al Mahtab M; Akbar SMF
Source: Self-asserted source
Sajib Chakraborty via Europe PubMed Central

Recent Advances in Understanding the Role of Genomic and Epigenomic Factors in Noncommunicable Diseases.

BioMed research international
2019-04-08 | Journal article
DOI: 10.1155/2019/1649873
PMID: 31080807
PMC: PMC6476148
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Phenotypic and genomic analyses of bacteriophages targeting environmental and clinical CS3-expressing enterotoxigenic Escherichia coli (ETEC) strains.

PloS one
2018-12-20 | Journal article
DOI: 10.1371/journal.pone.0209357
PMID: 30571788
PMC: PMC6301781
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Onco-Multi-OMICS Approach: A New Frontier in Cancer Research.

BioMed research international
2018-10-03 | Journal article
DOI: 10.1155/2018/9836256
PMID: 30402498
PMC: PMC6192166
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Evolutionary Divergence of Brain-specific Precursor miRNAs Drives Efficient Processing and Production of Mature miRNAs in Human.

Neuroscience
2018-09-28 | Journal article
DOI: 10.1016/j.neuroscience.2018.09.010
PMID: 30273624
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 3)‎

Protein abundance of AKT and ERK pathway components governs cell type-specific regulation of proliferation.

Molecular systems biology
2017-01-24 | Journal article
DOI: 10.15252/msb.20167258
PMID: 28123004
PMC: PMC5293153
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

In silico predicted mycobacterial epitope elicits in vitro T-cell responses.

Molecular immunology
2014-05-20 | Journal article
DOI: 10.1016/j.molimm.2014.04.009
PMID: 24853589
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Characterization of the Protective HIV-1 CTL Epitopes and the Corresponding HLA Class I Alleles: A Step towards Designing CTL Based HIV-1 Vaccine.

Advances in virology
2014-03-18 | Journal article
DOI: 10.1155/2014/321974
PMID: 24744786
PMC: PMC3976937
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

In silico QSAR analysis of quercetin reveals its potential as therapeutic drug for Alzheimer's disease.

Journal of young pharmacists : JYP
2013-12-15 | Journal article
DOI: 10.1016/j.jyp.2013.11.005
PMID: 24563598
PMC: PMC3930111
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

HLA supertypes contribute in HIV type 1 cytotoxic T lymphocyte epitope clustering in Nef and Gag proteins.

AIDS research and human retroviruses
2013-01-08 | Journal article
DOI: 10.1089/aid.2012.0160
PMID: 23061377
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

The difficulties in cancer treatment.

Ecancermedicalscience
2012-11-14 | Journal article
DOI: 10.3332/ecancer.2012.ed16
PMID: 24883085
PMC: PMC4024849
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 3)‎

Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria.

Molecular phylogenetics and evolution
2010-05-23 | Journal article
DOI: 10.1016/j.ympev.2010.05.020
PMID: 20580935
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

A computational approach for identification of epitopes in dengue virus envelope protein: a step towards designing a universal dengue vaccine targeting endemic regions.

In silico biology
2010-01-01 | Journal article
DOI: 10.3233/isb-2010-0435
PMID: 22430357
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Isolation of a bacteriophage specific for CS7-expressing strains of enterotoxigenic Escherichia coli.

Journal of medical microbiology
2009-12-10 | Journal article
DOI: 10.1099/jmm.0.014795-0
PMID: 20007763
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Assessment of the evolutionary origin and possibility of CRISPR-Cas (CASS) mediated RNA interference pathway in Vibrio cholerae O395.

In silico biology
2009-01-01 | Journal article
PMID: 20109154
Source: Self-asserted source
Sajib Chakraborty
grade
Preferred source (of 2)‎

Peer review (2 reviews for 2 publications/grants)

Review activity for Nature communications (1)
Review activity for PloS one. (1)
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