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Scopus Author ID: 54894200000

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Natural History Museum: London, GB

(Life Sciences)
Employment
Source: Self-asserted source
Rupert A. Collins

Works (27)

Integrative taxonomy of the black-barred disk pacus (Characiformes: Serrasalmidae), including the redescription of Myloplus schomburgkii and the description of two new species

Neotropical Ichthyology
2024 | Journal article
DOI: 10.1590/1982-0224-2023-0095
Contributors: Valéria N. Machado; Victória D. Pereira; Rafaela P. Ota; Rupert A. Collins; Marcelo Ândrade; James R. Garcia-Ayala; Michel Jégu; Izeni P. Farias; Tomas Hrbek
Source: check_circle
Crossref

A new species within the Enteromius kerstenii complex (Actinopterygii, Cyprinidae, Smiliogastrinae) from south-western Ethiopia

Zootaxa
2024-09-19 | Journal article
DOI: 10.11646/zootaxa.5512.2.2
Contributors: GERNOT K. ENGLMAIER; MIN CHAI; ALEMAYEHU WUBIE; RUPERT A. COLLINS; ABEBE GETAHUN
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Crossref

Invalid lectotypification for Synodontis victoriae Boulenger, 1906 (Siluriformes, Mochokidae) by Poll (1971), and the designation of a new lectotype

ZooKeys
2023-10-27 | Journal article
DOI: 10.3897/zookeys.1183.111868
Contributors: Gernot K. Englmaier; Rupert A. Collins
Source: check_circle
Crossref

Reproduction influences seasonal eDNA variation in a temperate marine fish community

Limnology and Oceanography Letters
2022-10 | Journal article
DOI: 10.1002/lol2.10271
Contributors: Rupert A. Collins; Charles Baillie; Nicholas C. Halliday; Sophie Rainbird; David W. Sims; Stefano Mariani; Martin J. Genner
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Crossref

Revision of the African cichlid fish genus Ctenochromis (Teleostei, Cichliformes), including a description of the new genus Shuja from Lake Tanganyika and the new species Ctenochromis scatebra from northern Tanzania

European Journal of Taxonomy
2022-05-11 | Journal article
DOI: 10.5852/ejt.2022.819.1775
Contributors: Martin J. Genner; Ling-Lan Hsu; Rupert A. Collins; Alan M. Smith; Andrew D. Saxon; Asilatu H. Shechonge; Benjamin P. Ngatunga; George F. Turner
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Crossref

Meta‐Fish‐Lib: A generalised, dynamic DNA reference library pipeline for metabarcoding of fishes

Journal of Fish Biology
2021-10 | Journal article
DOI: 10.1111/jfb.14852
Contributors: Rupert A. Collins; Giulia Trauzzi; Katherine M. Maltby; Thomas I. Gibson; Frances C. Ratcliffe; Jane Hallam; Sophie Rainbird; James Maclaine; Peter A. Henderson; David W. Sims et al.
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Crossref

Aquatic Organisms Research with DNA Barcodes

Diversity
2021-07-06 | Journal article
DOI: 10.3390/d13070306
Contributors: Manuel Elías-Gutiérrez; Nicolas Hubert; Rupert A. Collins; Camilo Andrade-Sossa
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Crossref
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Preferred source (of 2)‎

Climate Change Drives Poleward Increases and Equatorward Declines in Marine Species

Current Biology
2020 | Journal article
DOI: 10.1016/j.cub.2020.02.043
EID:

2-s2.0-85083009602

Part of ISSN: 18790445 09609822
Contributors: Hastings, R.A.; Rutterford, L.A.; Freer, J.J.; Collins, R.A.; Simpson, S.D.; Genner, M.J.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Environmental DNA-based xenomonitoring for determining Schistosoma presence in tropical freshwaters

Parasites and Vectors
2020 | Journal article
DOI: 10.1186/s13071-020-3941-6
EID:

2-s2.0-85079334832

Part of ISSN: 17563305
Contributors: Alzaylaee, H.; Collins, R.A.; Shechonge, A.; Ngatunga, B.P.; Morgan, E.R.; Genner, M.J.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Integrative taxonomy reveals a new species of Pacu (Characiformes: Serrasalmidae: Myloplus) from the Brazilian Amazon,Integrative taxonomy reveals a new species of Pacu (Characiformes: Serrasalmidae: Myloplus) from the Brazilian Amazon

Neotropical Ichthyology
2020 | Journal article
DOI: 10.1590/1982-0224-20190112
EID:

2-s2.0-85084429954

Part of ISSN: 19820224 16796225
Contributors: Ota, R.P.; Machado, V.N.; Andrade, M.C.; Collins, R.A.; Farias, I.P.; Hrbek, T.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Schistosoma species detection by environmental DNA assays in african freshwaters

PLoS Neglected Tropical Diseases
2020 | Journal article
DOI: 10.1371/journal.pntd.0008129
EID:

2-s2.0-85082979664

Part of ISSN: 19352735 19352727
Contributors: Alzaylaee, H.; Collins, R.A.; Rinaldi, G.; Shechonge, A.; Ngatunga, B.; Morgan, E.R.; Genner, M.J.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

From shallow to deep divergences: mixed messages from Amazon Basin cichlids

Hydrobiologia
2019 | Journal article
DOI: 10.1007/s10750-018-3790-x
EID:

2-s2.0-85055335772

Part of ISSN: 15735117 00188158
Contributors: Carvalho, A.P.C.; Collins, R.A.; Martínez, J.G.; Farias, I.P.; Hrbek, T.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Non-specific amplification compromises environmental DNA metabarcoding with COI

Methods in Ecology and Evolution
2019 | Journal article
DOI: 10.1111/2041-210X.13276
EID:

2-s2.0-85073926369

Part of ISSN: 2041210X
Contributors: Collins, R.A.; Bakker, J.; Wangensteen, O.S.; Soto, A.Z.; Corrigan, L.; Sims, D.W.; Genner, M.J.; Mariani, S.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier
grade
Preferred source (of 2)‎

An in silico comparison of protocols for dated phylogenomics

Systematic Biology
2018 | Journal article
DOI: 10.1093/sysbio/syx089
EID:

2-s2.0-85038902804

Part of ISSN: 1076836X 10635157
Contributors: Collins, R.A.; Hrbek, T.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Biogeography and species delimitation of the rheophilic suckermouth catfish genus Pseudolithoxus (Siluriformes: Loricariidae), with the description of a new species from the Brazilian Amazon

Systematics and Biodiversity
2018 | Journal article
DOI: 10.1080/14772000.2018.1468362
EID:

2-s2.0-85047270170

Part of ISSN: 14780933 14772000
Contributors: Collins, R.A.; Bifi, A.G.; de Oliveira, R.R.; Ribeiro, E.D.; Lujan, N.K.; Rapp Py-Daniel, L.H.; Hrbek, T.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

One thousand DNA barcodes of piranhas and pacus reveal geographic structure and unrecognised diversity in the Amazon

Scientific Reports
2018 | Journal article
DOI: 10.1038/s41598-018-26550-x
EID:

2-s2.0-85047863667

Part of ISSN: 20452322
Contributors: Machado, V.N.; Collins, R.A.; Ota, R.P.; Andrade, M.C.; Farias, I.P.; Hrbek, T.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier
grade
Preferred source (of 2)‎

Persistence of environmental DNA in marine systems

Communications Biology
2018 | Journal article
DOI: 10.1038/s42003-018-0192-6
EID:

2-s2.0-85058931037

Part of ISSN: 23993642
Contributors: Collins, R.A.; Wangensteen, O.S.; O’Gorman, E.J.; Mariani, S.; Sims, D.W.; Genner, M.J.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier
grade
Preferred source (of 2)‎

Phylogenetic systematics of leaffishes (Teleostei: Polycentridae, Nandidae)

Journal of Zoological Systematics and Evolutionary Research
2015 | Journal article
DOI: 10.1111/jzs.12103
EID:

2-s2.0-84942982313

Part of ISSN: 14390469 09475745
Contributors: Collins, R.A.; Britz, R.; Rüber, L.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Anin silicocomparison of reduced-representation and sequence-capture protocols for phylogenomics

2015-11-21 | Preprint
DOI: 10.1101/032565
Contributors: Rupert A. Collins; Tomas Hrbek
Source: check_circle
Crossref

A preliminary inventory of the catfishes of the lower Rio Nhamundá, Brazil (Ostariophysi, Siluriformes)

Biodiversity Data Journal
2015-04-29 | Journal article
DOI: 10.3897/BDJ.3.e4162
Contributors: Rupert Collins; Emanuell Duarte Ribeiro; Valéria Nogueira Machado; Tomas Hrbek; Izeni Farias
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Known knowns, known unknowns, unknown unknowns and unknown knowns in DNA barcoding: A comment on Dowton et al.

Systematic Biology
2014 | Journal article
DOI: 10.1093/sysbio/syu060
EID:

2-s2.0-84921835442

Part of ISSN: 1076836X 10635157
Contributors: Collins, R.A.; Cruickshank, R.H.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Something in the water: Biosecurity monitoring of ornamental fish imports using environmental DNA

Biological Invasions
2013 | Journal article
DOI: 10.1007/s10530-012-0376-9
EID:

2-s2.0-84877627456

Part of ISSN: 13873547
Contributors: Collins, R.A.; Armstrong, K.F.; Holyoake, A.J.; Keeling, S.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

The seven deadly sins of DNA barcoding

Molecular Ecology Resources
2013 | Journal article
DOI: 10.1111/1755-0998.12046
EID:

2-s2.0-84885476668

Part of ISSN: 1755098X 17550998
Contributors: Collins, R.A.; Cruickshank, R.H.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Barcoding and border biosecurity: Identifying cyprinid fishes in the aquarium trade

PLoS ONE
2012 | Journal article
DOI: 10.1371/journal.pone.0028381
EID:

2-s2.0-84856108810

Part of ISSN: 19326203
Contributors: Collins, R.A.; Armstrong, K.F.; Meier, R.; Yi, Y.; Brown, S.D.J.; Cruickshank, R.H.; Keeling, S.; Johnston, C.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Barcoding's next top model: An evaluation of nucleotide substitution models for specimen identification

Methods in Ecology and Evolution
2012 | Journal article
DOI: 10.1111/j.2041-210X.2011.00176.x
EID:

2-s2.0-84856087248

Part of ISSN: 2041210X
Contributors: Collins, R.A.; Boykin, L.M.; Cruickshank, R.H.; Armstrong, K.F.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Sliding window analyses for optimal selection of mini-barcodes, and application to 454-pyrosequencing for specimen identification from degraded DNA

PLoS ONE
2012 | Journal article
DOI: 10.1371/journal.pone.0038215
EID:

2-s2.0-84861567354

Part of ISSN: 19326203
Contributors: Boyer, S.; Brown, S.D.J.; Collins, R.A.; Cruickshank, R.H.; Lefort, M.-C.; Malumbres-Olarte, J.; Wratten, S.D.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier

Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding

Molecular Ecology Resources
2012 | Journal article
DOI: 10.1111/j.1755-0998.2011.03108.x
EID:

2-s2.0-84859563653

Part of ISSN: 1755098X 17550998
Contributors: Brown, S.D.J.; Collins, R.A.; Boyer, S.; Lefort, M.-C.; Malumbres-Olarte, J.; Vink, C.J.; Cruickshank, R.H.
Source: Self-asserted source
Rupert A. Collins via Scopus - Elsevier
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