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Works (50 of 89)

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Evolution and Genetic Characterization of Seoul Virus in Wild RatsRattus Norvegicusfrom an urban park in Lyon, France 2020-2022

2023-04-12 | Preprint
Contributors: Hussein Alburkat; Teemu Smura; Marie Bouilloud; Julien Pradel; Gwendoline Anfray; Karine Berthier; Lara Dutra; Anne Loiseau; Thanakorn Niamsap; Viktor Olander et al.
Source: check_circle
Crossref

Enhanced Viral Metagenomics with Lazypipe 2

2022-12-22 | Preprint
Contributors: Ilya Plyusnin; Olli Vapalahti; Tarja Sironen; Ravi Kant; Teemu Smura
Source: check_circle
Crossref

Serological Evidence of Exposure to Onyong-Nyong and Chikungunya Viruses in Febrile Patients of Rural Taita-Taveta County and Urban Kibera Informal Settlement in Nairobi, Kenya

Viruses
2022-06 | Journal article | Author
Contributors: Moses Muia Masika; Essi Korhonen; Teemu Smura; Ruut Joensuu; Joseph Ogola; Dufton Mwaengo; Anne J. Jääskeläinen; Hussein Alburkat; Yong-Dae Gwon; Magnus Evander et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 2)‎

COVID-19 mRNA vaccine induced antibody responses against three SARS-CoV-2 variants

Nature communications
2021 | Journal article
EID:

2-s2.0-85109664466

Part of ISSN: 20411723
Contributors: Jalkanen, P.; Kolehmainen, P.; Häkkinen, H.K.; Huttunen, M.; Tähtinen, P.A.; Lundberg, R.; Maljanen, S.; Reinholm, A.; Tauriainen, S.; Pakkanen, S.H. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon response

Cell Host and Microbe
2021 | Journal article
EID:

2-s2.0-85100584829

Part of ISSN: 19346069 19313128
Contributors: Lin, J.-W.; Tang, C.; Wei, H.-C.; Du, B.; Chen, C.; Wang, M.; Zhou, Y.; Yu, M.-X.; Cheng, L.; Kuivanen, S. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

HaVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

bioRxiv
2021 | Other
EID:

2-s2.0-85102364299

Part of ISSN: 26928205
Contributors: Nguyen, P.T.; Plyusnin, I.; Sironen, T.; Vapalahti, O.; Kant, R.; Smura, T.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier
grade
Preferred source (of 2)‎

High-throughput sequencing of two European strains of tick-borne encephalitis virus (TBEV), Hochosterwitz and 1993/783

Ticks and Tick-borne Diseases
2021 | Journal article
EID:

2-s2.0-85092639809

Part of ISSN: 18779603 1877959X
Contributors: Paulsen, K.M.; Lamsal, A.; Bastakoti, S.; Pettersson, J.H.-O.; Pedersen, B.N.; Stiasny, K.; Haglund, M.; Smura, T.; Vapalahti, O.; Vikse, R. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Kinetics of neutralizing antibodies of covid-19 patients tested using clinical d614g, b.1.1.7, and b 1.351 isolates in microneutralization assays

Viruses
2021 | Journal article
EID:

2-s2.0-85107434926

Part of ISSN: 19994915
Contributors: Virtanen, J.; Uusitalo, R.; Korhonen, E.M.; Aaltonen, K.; Smura, T.; Kuivanen, S.; Pakkanen, S.H.; Mero, S.; Patjas, A.; Riekkinen, M. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Molecular detection and phylogenetic analysis of Borrelia miyamotoi strains from ticks collected in the capital region of Finland

Ticks and Tick-borne Diseases
2021 | Journal article
EID:

2-s2.0-85096830524

Part of ISSN: 18779603 1877959X
Contributors: Zakham, F.; Jääskeläinen, A.J.; Castrén, J.; Sormunen, J.J.; Uusitalo, R.; Smura, T.; Von Troil, G.; Kuivanen, S.; Sironen, T.; Vapalahti, O.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Severe acute respiratory syndrome coronavirus 2 in farmed mink (neovison vison), Poland

Emerging Infectious Diseases
2021 | Journal article
EID:

2-s2.0-85113340932

Part of ISSN: 10806059 10806040
Contributors: Rabalski, L.; Kosinski, M.; Smura, T.; Aaltonen, K.; Kant, R.; Sironen, T.; Szewczyk, B.; Grzybek, M.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2

Wellcome Open Research
2021 | Journal article
EID:

2-s2.0-85107141280

Part of ISSN: 2398502X
Contributors: O'Toole, A.; Kraemer, M.U.G.; Hill, V.; Pybus, O.G.; Watts, A.; Bogoch, I.I.; Khan, K.; Messina, J.P.; Tegally, H.; Lessells, R.R. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Viral RNA metagenomics of Hyalomma ticks collected from dromedary camels in Makkah province, Saudi Arabia

Viruses
2021 | Journal article
EID:

2-s2.0-85111592418

Part of ISSN: 19994915
Contributors: Zakham, F.; Albalawi, A.E.; Alanazi, A.D.; Nguyen, P.T.; Alouffi, A.S.; Alaoui, A.; Sironen, T.; Smura, T.; Vapalahti, O.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

ClusTRace, a bioinformatic pipeline for analyzing clusters in virus phylogenies

2021-12-12 | Preprint
Contributors: Ilya Plyusnin; Phuoc Thien Truong Nguyen; Tarja Sironen; Olli Vapalahti; Teemu Smura; Ravi Kant
Source: check_circle
Crossref

HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences.

BMC bioinformatics
2021-07-17 | Journal article
Source: Self-asserted source
Teemu Smura
grade
Preferred source (of 2)‎

2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Archives of Virology
2020 | Journal article
EID:

2-s2.0-85090299667

Part of ISBN:

14328798 03048608

Contributors: Kuhn, J.H.; Adkins, S.; Alioto, D.; Alkhovsky, S.V.; Amarasinghe, G.K.; Anthony, S.J.; Avšič-Županc, T.; Ayllón, M.A.; Bahl, J.; Balkema-Buschmann, A. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Aseptic meningitis outbreak associated with echovirus 4 in Northern Europe in 2013–2014

Journal of Clinical Virology
2020 | Journal article
EID:

2-s2.0-85087512447

Part of ISBN:

18735967 13866532

Contributors: Smura, T.; Blomqvist, S.; Kolehmainen, P.; Schuffenecker, I.; Lina, B.; Böttcher, S.; Diedrich, S.; Löve, A.; Brytting, M.; Hauzenberger, E. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Chikungunya virus infections in Finnish travellers 2009-2019

Infection Ecology and Epidemiology
2020 | Journal article
EID:

2-s2.0-85089942861

Part of ISBN:

20008686

Contributors: Jääskeläinen, A.J.; Kareinen, L.; Smura, T.; Kallio-Kokko, H.; Vapalahti, O.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Detection and molecular characterisation of SARS-CoV-2 in farmed mink (Neovision vision) in Poland

bioRxiv
2020 | Other
EID:

2-s2.0-85099902326

Part of ISSN: 26928205
Contributors: Rabalski, L.; Kosinski, M.; Smura, T.; Aaltonen, K.; Kant, R.; Sironen, T.; Szewczyk, B.; Grzybek, M.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier
grade
Preferred source (of 2)‎

Detection of dengue virus type 2 of Indian origin in acute febrile patients in rural Kenya

PLoS Neglected Tropical Diseases
2020 | Journal article
EID:

2-s2.0-85082098643

Part of ISBN:

19352735 19352727

Contributors: Masika, M.M.; Korhonen, E.M.; Smura, T.; Uusitalo, R.; Vapalahti, K.; Mwaengo, D.; Jääskeläinen, A.J.; Anzala, O.; Vapalahti, O.; Huhtamo, E.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Differences in tissue and species tropism of reptarenavirus species studied by vesicular stomatitis virus pseudotypes

Viruses
2020 | Journal article
EID:

2-s2.0-85083023239

Part of ISBN:

19994915

Contributors: Korzyukov, Y.; Iheozor-Ejiofor, R.; Levanov, L.; Smura, T.; Hetzel, U.; Szirovicza, L.; de la Torre, J.C.; Martinez-Sobrido, L.; Kipar, A.; Vapalahti, O. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Eurosurveillance
2020 | Journal article
EID:

2-s2.0-85089543989

Part of ISSN: 15607917 1025496X
Contributors: Alm, E.; Broberg, E.K.; Connor, T.; Hodcroft, E.B.; Komissarov, A.B.; Maurer-Stroh, S.; Melidou, A.; Neher, R.A.; O'Toole, Á.; Pereyaslov, D. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Identification of reptarenaviruses, hartmaniviruses and a novel chuvirus in captive brazilian native boa constrictors with boid inclusion body disease

bioRxiv
2020 | Other
EID:

2-s2.0-85095633160

Part of ISSN: 26928205
Contributors: Argenta, F.F.; Hepojoki, J.; Smura, T.; Szirovicza, L.; Hammerschmitt, M.E.; Driemeier, D.; Kipar, A.; Hetzel, U.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Identification of reptarenaviruses, hartmaniviruses, and a novel chuvirus in captive native Brazilian BoA constrictors with boiD inclusion body disease

Journal of Virology
2020 | Journal article
EID:

2-s2.0-85084937013

Part of ISBN:

10985514 0022538X

Contributors: Argenta, F.F.; Hepojoki, J.; Smura, T.; Szirovicza, L.; Hammerschmitt, M.E.; Driemeier, D.; Kipar, A.; Hetzel, U.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Lymphocytic choriomeningitis virus infections and seroprevalence, Southern Iraq

Emerging Infectious Diseases
2020 | Journal article
EID:

2-s2.0-85096814645

Part of ISSN: 10806059 10806040
Contributors: Alburkat, H.; Jääskeläinen, A.J.; Barakat, A.M.; Hasony, H.J.; Sironen, T.; Al-Hello, H.; Smura, T.; Vapalahti, O.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity

Science
2020 | Journal article
EID:

2-s2.0-85094613777

Part of ISSN: 10959203 00368075
Contributors: Cantuti-Castelvetri, L.; Ojha, R.; Pedro, L.D.; Djannatian, M.; Franz, J.; Kuivanen, S.; van der Meer, F.; Kallio, K.; Kaya, T.; Anastasina, M. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Neuropilin-1 facilitates SARS-CoV-2 cell entry and provides a possible pathway into the central nervous system

bioRxiv
2020 | Other
EID:

2-s2.0-85102723383

Part of ISSN: 26928205
Contributors: Cantuti-Castelvetri, L.; Ojha, R.; Pedro, L.D.; Djannatian, M.; Franz, J.; Kuivanen, S.; Kallio, K.; Kaya, T.; Anastasina, M.; Smura, T. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types

Virus Evolution
2020 | Journal article
EID:

2-s2.0-85100343682

Part of ISSN: 20571577
Contributors: Plyusnin, I.; Kant, R.; Jaä¨skelaïnen, A.J.; Sironen, T.; Holm, L.; Vapalahti, O.; Smura, T.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Novel NGS Pipeline for Virus Discovery from a Wide Spectrum of Hosts and Sample Types

bioRxiv
2020 | Other
EID:

2-s2.0-85098894194

Part of ISSN: 26928205
Contributors: Plyusnin, I.; Kant, R.; Jääskeläinen, A.J.; Sironen, T.; Holm, L.; Vapalahti, O.; Smura, T.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Orthohantavirus isolated in reservoir host cells displays minimal genetic changes and retains wild-type infection properties

Viruses
2020 | Journal article
EID:

2-s2.0-85083785644

Part of ISBN:

19994915

Contributors: Strandin, T.; Smura, T.; Ahola, P.; Aaltonen, K.; Sironen, T.; Hepojoki, J.; Eckerle, I.; Ulrich, R.G.; Vapalahti, O.; Kipar, A. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Python nidoviruses, more than respiratory pathogens

bioRxiv
2020 | Other
EID:

2-s2.0-85102725247

Part of ISSN: 26928205
Contributors: Dervas, E.; Hepojoki, J.; Smura, T.; Prähauser, B.; Windbichler, K.; Blümich, S.; Ramis, A.; Hetzel, U.; Kipar, A.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Serological and molecular findings during SARS-CoV-2 infection: The first case study in Finland, January to February 2020

Eurosurveillance
2020 | Journal article
EID:

2-s2.0-85082380999

Part of ISBN:

15607917 1025496X

Contributors: Haveri, A.; Smura, T.; Kuivanen, S.; Österlund, P.; Hepojoki, J.; Ikonen, N.; Pitkäpaasi, M.; Blomqvist, S.; Rönkkö, E.; Kantele, A. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Serpentoviruses: More than respiratory pathogens

Journal of Virology
2020 | Journal article
EID:

2-s2.0-85090170786

Part of ISBN:

10985514 0022538X

Contributors: Dervas, E.; Hepojoki, J.; Smura, T.; Prähauser, B.; Windbichler, K.; Blümich, S.; Ramis, A.; Hetzel, U.; Kipar, A.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Sindbis Virus Strains of Divergent Origin Isolated from Humans and Mosquitoes during a Recent Outbreak in Finland

Vector-Borne and Zoonotic Diseases
2020 | Journal article
EID:

2-s2.0-85091232821

Part of ISSN: 15577759 15303667
Contributors: Korhonen, E.M.; Suvanto, M.T.; Uusitalo, R.; Faolotto, G.; Smura, T.; Sane, J.; Vapalahti, O.; Huhtamo, E.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Specialist laboratory networks as preparedness and response tool - The emerging viral diseases-expert laboratory network and the chikungunya outbreak, Thailand, 2019

Eurosurveillance
2020 | Journal article
EID:

2-s2.0-85083072176

Part of ISBN:

15607917 1025496X

Contributors: Venturi, G.; Aberle, S.W.; Avšič-Županc, T.; Barzon, L.; Batejat, C.; Burdino, E.; Carletti, F.; Charrel, R.; Christova, I.; Connell, J. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Lymphocytic Choriomeningitis Virus Infections and Seroprevalence, Southern Iraq.

Emerging infectious diseases
2020-12-01 | Journal article
Source: Self-asserted source
Teemu Smura

Range Expansion of Bombali Virus in Mops condylurus Bats, Kenya, 2019.

Emerging infectious diseases
2020-12-01 | Journal article
Source: Self-asserted source
Teemu Smura
grade
Preferred source (of 2)‎

A novel negevirus isolated from Aedes vexans mosquitoes in Finland.

Archives of virology
2020-09-20 | Journal article
Source: Self-asserted source
Teemu Smura
grade
Preferred source (of 3)‎

A novel experimental system reveals immunoregulatory responses as mediators of persistent orthohantavirus infections in a rodent reservoir host

bioRxiv
2019 | Other
EID:

2-s2.0-85095654724

Part of ISSN: 26928205
Contributors: Strandin, T.; Smura, T.; Ahola, P.; Aaltonen, K.; Sironen, T.; Hepojoki, J.; Eckerle, I.; Ulrich, R.G.; Vapalahti, O.; Kipar, A. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Bombali virus in mops condylurus bat, kenya

Emerging Infectious Diseases
2019 | Journal article
EID:

2-s2.0-85065018321

Part of ISBN:

10806059 10806040

Contributors: Forbes, K.M.; Webala, P.W.; Jääskeläinen, A.J.; Abdurahman, S.; Ogola, J.; Masika, M.M.; Kivistö, I.; Alburkat, H.; Plyusnin, I.; Levanov, L. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Co-circulation of highly diverse aleutian mink disease virus strains in Finland

Journal of General Virology
2019 | Journal article
EID:

2-s2.0-85061148381

Part of ISBN:

14652099 00221317

Contributors: Virtanen, J.; Smura, T.; Aaltonen, K.; Moisander-Jylhäa, A.-M.; Knuuttila, A.; Vapalahti, O.; Sironen, T.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Detection of novel tick-borne pathogen, alongshan virus, in Ixodes ricinus ticks, south-eastern Finland, 2019

Eurosurveillance
2019 | Journal article
EID:

2-s2.0-85069317114

Part of ISBN:

15607917 1025496X

Contributors: Kuivanen, S.; Levanov, L.; Kareinen, L.; Sironen, T.; Jääskeläinen, A.J.; Plyusnin, I.; Zakham, F.; Emmerich, P.; Schmidt-Chanasit, J.; Hepojoki, J. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Identification of a novel deltavirus in boa constrictors

mBio
2019 | Journal article
EID:

2-s2.0-85064206468

Part of ISBN:

21507511 21612129

Contributors: Hetzel, U.; Szirovicza, L.; Smura, T.; Prähauser, B.; Vapalahti, O.; Kipar, A.; Hepojoki, J.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier
grade
Preferred source (of 2)‎

Introduction and dispersal of sindbis virus from central Africa to Europe

Journal of Virology
2019 | Journal article
EID:

2-s2.0-85070757288

Part of ISBN:

10985514 0022538X

Contributors: Ling, J.; Smura, T.; Lundström, J.O.; Pettersson, J.H.-O.; Sironen, T.; Vapalahti, O.; Lundkvist, Å.; Hesson, J.C.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

No Association between Ljungan Virus Seropositivity and the Beta-cell Damaging Process in the Finnish Type 1 Diabetes Prediction and Prevention Study Cohort

Pediatric Infectious Disease Journal
2019 | Journal article
EID:

2-s2.0-85061479877

Part of ISBN:

15320987 08913668

Contributors: Jääskeläinen, A.J.; Nurminen, N.; Kolehmainen, P.; Smura, T.; Tauriainen, S.; Toppari, J.; Ilonen, J.; Veijola, R.; Knip, M.; Hyöty, H. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Recent establishment of tick-borne encephalitis foci with distinct viral lineages in the Helsinki area, Finland

Emerging Microbes and Infections
2019 | Journal article
EID:

2-s2.0-85065787786

Part of ISBN:

22221751

Contributors: Smura, T.; Tonteri, E.; Jääskeläinen, A.; von Troil, G.; Kuivanen, S.; Huitu, O.; Kareinen, L.; Uusitalo, J.; Uusitalo, R.; Hannila-Handelberg, T. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Characterization of Haartman Institute snake virus-1 (HISV-1) and HISV-like viruses—The representatives of genus Hartmanivirus, family Arenaviridae

PLoS Pathogens
2018 | Journal article
EID:

2-s2.0-85057521784

Part of ISBN:

15537374 15537366

Contributors: Hepojoki, J.; Hepojoki, S.; Smura, T.; Szirovicza, L.; Dervas, E.; Prähauser, B.; Nufer, L.; Schraner, E.M.; Vapalahti, O.; Kipar, A. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Evolution and postglacial colonization of Seewis hantavirus with Sorex araneus in Finland

Infection, Genetics and Evolution
2018 | Journal article
EID:

2-s2.0-85034057834

Part of ISBN:

15677257 15671348

Contributors: Ling, J.; Smura, T.; Tamarit, D.; Huitu, O.; Voutilainen, L.; Henttonen, H.; Vaheri, A.; Vapalahti, O.; Sironen, T.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Fatal tick-borne encephalitis virus infections caused by Siberian and European subtypes, Finland, 2015

Emerging Infectious Diseases
2018 | Journal article
EID:

2-s2.0-85045626983

Part of ISBN:

10806059 10806040

Contributors: Kuivanen, S.; Smura, T.; Rantanen, K.; Kämppi, L.; Kantonen, J.; Kero, M.; Jääskeläinen, A.; Jääskeläinen, A.J.; Sane, J.; Myllykangas, L. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Genome sequences of RIGVIR oncolytic virotherapy virus and five other echovirus 7 isolates

Genome Announcements
2018 | Journal article
EID:

2-s2.0-85046648406

Part of ISBN:

21698287

Contributors: Hietanen, E.; Smura, T.; Hakanen, M.; Chansaenroj, J.; Merilahti, P.; Nevalainen, J.; Pandey, S.; Koskinen, S.; Tripathi, L.; Poovorawan, Y. et al.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier

Identification of a novel deltavirus in Boa constrictor

bioRxiv
2018 | Other
EID:

2-s2.0-85095648384

Part of ISSN: 26928205
Contributors: Hetzel, U.; Szirovicza, L.; Smura, T.; Prähauser, B.; Vapalahti, O.; Kipar, A.; Hepojoki, J.
Source: Self-asserted source
Teemu Smura via Scopus - Elsevier
grade
Preferred source (of 2)‎
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