Personal information

Emails & domains

Verified email addresses

Verified email domains

Other IDs

Scopus Author ID: 57204460256
Loop profile: 1171790

Biography

I'm a computational biologist working with Liz Worthey at CGDS (center for computational genomics and data science). My long-term research interests focus on developing comprehensive tools/methods for bioinformatics analysis of biomolecular sequence data to diagnose patients with rare, undiagnosed, or misdiagnosed diseases

Activities

Collapse all

Employment (1)

Louisiana State University Health Sciences Center: New Orleans, LA, US

2017-09-01 to 2019-07-04 | Bioinformatics Analyst (Genetics)
Employment
Source: Self-asserted source
Tarun karthik kumar Mamidi

Education and qualifications (2)

University of Alabama at Birmingham: Birmingham, AL, US

2019-08-15 to present | PhD
Education
Source: Self-asserted source
Tarun karthik kumar Mamidi

Indiana University Purdue University at Indianapolis: Indianapolis, IN, US

2015-08-10 to 2017-05-14 | Bioinformatics (Biohealth Informatics)
Education
Source: Self-asserted source
Tarun karthik kumar Mamidi

Works (16)

Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project

Human Genomics
2024 | Journal article
DOI: 10.1186/s40246-024-00604-w
EID:

2-s2.0-85191869582

Part of ISSN: 14797364 14739542
Contributors: Stenton, S.L.; O’Leary, M.C.; Lemire, G.; VanNoy, G.E.; DiTroia, S.; Ganesh, V.S.; Groopman, E.; O’Heir, E.; Mangilog, B.; Osei-Owusu, I. et al.
Source: Self-asserted source
Tarun karthik kumar Mamidi via Scopus - Elsevier

DITTO: An Explainable Machine-Learning Model for Transcript-Specific Variant Pathogenicity Prediction

2024-04-12 | Preprint
DOI: 10.20944/preprints202404.0837.v1
Contributors: Tarun Karthik Kumar Mamidi; Brandon M. Wilk; Manavalan Gajapathy; Elizabeth A. Worthey
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

PCa-Clf: A Classifier of Prostate Cancer Patients into Patients with Indolent and Aggressive Tumors Using Machine Learning

Machine Learning and Knowledge Extraction
2023 | Journal article
DOI: 10.3390/make5040066
EID:

2-s2.0-85180511261

Part of ISSN: 25044990
Contributors: Mamidi, Y.K.K.; Mamidi, T.K.K.; Kabir, M.W.U.; Wu, J.; Hoque, M.T.; Hicks, C.
Source: Self-asserted source
Tarun karthik kumar Mamidi via Scopus - Elsevier
grade
Preferred source (of 3)‎

Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

Clinical and Translational Science
2022 | Journal article
DOI: 10.1111/cts.13302
EID:

2-s2.0-85133600376

Part of ISSN: 17528062 17528054
Contributors: Unni, D.R.; Moxon, S.A.T.; Bada, M.; Brush, M.; Bruskiewich, R.; Caufield, J.H.; Clemons, P.A.; Dancik, V.; Dumontier, M.; Fecho, K. et al.
Source: Self-asserted source
Tarun karthik kumar Mamidi via Scopus - Elsevier

Progress toward a universal biomedical data translator

Clinical and Translational Science
2022 | Journal article
DOI: 10.1111/cts.13301
EID:

2-s2.0-85133625422

Part of ISSN: 17528062 17528054
Contributors: Fecho, K.; Thessen, A.E.; Baranzini, S.E.; Bizon, C.; Hadlock, J.J.; Huang, S.; Roper, R.T.; Southall, N.; Ta, C.; Watkins, P.B. et al.
Source: Self-asserted source
Tarun karthik kumar Mamidi via Scopus - Elsevier

Elucidation of the Genomic-Epigenomic Interaction Landscape of Aggressive Prostate Cancer

BioMed Research International
2021 | Journal article
DOI: 10.1155/2021/6641429
EID:

2-s2.0-85099977468

Part of ISSN: 23146141 23146133
Contributors: Kumar Mamidi, T.K.; Wu, J.; Hicks, C.
Source: Self-asserted source
Tarun karthik kumar Mamidi via Scopus - Elsevier

Development of An Individualized Risk Prediction Model for COVID-19 Using Electronic Health Record Data

Frontiers in Big Data
2021-06-04 | Journal article
DOI: 10.3389/fdata.2021.675882
Part of ISSN: 2624-909X
Source: Self-asserted source
Tarun karthik kumar Mamidi
grade
Preferred source (of 2)‎

Delineation of the Germline and Somatic Mutation Interaction Landscape in Triple-Negative and Non-Triple-Negative Breast Cancer

International Journal of Genomics
2020-07-07 | Journal article
DOI: 10.1155/2020/2641370
Part of ISSN: 2314-436X
Part of ISSN: 2314-4378
Source: Self-asserted source
Tarun karthik kumar Mamidi
grade
Preferred source (of 2)‎

Unraveling the Genomic-Epigenomic Interaction Landscape in Triple Negative and Non-Triple Negative Breast Cancer

Cancers
2020-06-12 | Journal article
DOI: 10.3390/cancers12061559
Part of ISSN: 2072-6694
Source: Self-asserted source
Tarun karthik kumar Mamidi
grade
Preferred source (of 5)‎

Deconvolution of the genomic and epigenomic interaction landscape of triple-negative breast cancer

Cancers
2019 | Journal article
DOI: 10.3390/cancers11111692
EID:

2-s2.0-85074394417

Part of ISSN: 20726694
Contributors: Wu, J.; Mamidi, T.K.K.; Zhang, L.; Hicks, C.
Source: Self-asserted source
Tarun karthik kumar Mamidi via Scopus - Elsevier
grade
Preferred source (of 3)‎

Integrating Germline and Somatic Mutation Information for the Discovery of Biomarkers in Triple-Negative Breast Cancer

International Journal of Environmental Research and Public Health
2019 | Journal article
DOI: 10.3390/ijerph16061055
Source: Self-asserted source
Tarun karthik kumar Mamidi
grade
Preferred source (of 4)‎

Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

BMC Cancer
2019 | Journal article
DOI: 10.1186/s12885-019-5440-8
Source: Self-asserted source
Tarun karthik kumar Mamidi
grade
Preferred source (of 2)‎

Interactions between Germline and Somatic Mutated Genes in Aggressive Prostate Cancer

Prostate Cancer
2019 | Journal article
DOI: 10.1155/2019/4047680
EID:

2-s2.0-85063982863

Part of ISSN: 2090312X 20903111
Contributors: Mamidi, T.K.K.; Wu, J.; Hicks, C.
Source: Self-asserted source
Tarun karthik kumar Mamidi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Mapping the Germline and Somatic Mutation Interaction Landscape in Indolent and Aggressive Prostate Cancers

Journal of Oncology
2019 | Journal article
DOI: 10.1155/2019/4168784
EID:

2-s2.0-85075789839

Part of ISSN: 16878469 16878450
Contributors: Mamidi, T.K.K.; Wu, J.; Hicks, C.
Source: Self-asserted source
Tarun karthik kumar Mamidi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Transcriptome Analysis of Molecular Signatures and Pathways Modulating White Blood Cell Count in Childhood Acute Lymphoblastic Leukemia

Biomedical Journal of Scientific & Technical Research
2019-07-23 | Journal article
DOI: 10.26717/bjstr.2019.20.003380
Part of ISSN: 2574-1241
Source: Self-asserted source
Tarun karthik kumar Mamidi

Whole genome transcriptome analysis of the association between obesity and triple-negative breast cancer in caucasian women

International Journal of Environmental Research and Public Health
2018 | Journal article
DOI: 10.3390/ijerph15112338
EID:

2-s2.0-85055661301

Part of ISSN: 16604601 16617827
Contributors: Mamidi, T.K.K.; Wu, J.; Tchounwou, P.B.; Miele, L.; Hicks, C.
Source: Self-asserted source
Tarun karthik kumar Mamidi via Scopus - Elsevier
grade
Preferred source (of 3)‎
How many people are using ORCID?