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Biography

Currently working on proteomics (https://resistancedb.org/), but still got some time to work on structural biology problems and software to perform molecular docking and binding free energy calculations. https://github.com/Valdes-Tresanco-MS/AMDock, https://github.com/Valdes-Tresanco-MS/AMDock-win, and https://github.com/Valdes-Tresanco-MS/gmx_MMPBSA

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Education and qualifications (3)

University of Calgary: Calgary, AB, CA

2019-01 to present | Ph.D. Biophysical Chemistry (Bioscience)
Education
Source: Self-asserted source
Mario E. Valdés-Tresanco

University of Havana: Havana, CU

2015-09 to 2018-11 | M.Sc. Biochemistry (Center for Protein Studies)
Education
Source: Self-asserted source
Mario E. Valdés-Tresanco

University of Havana: Havana, CU

2010-09 to 2015-07 | B.Sc. Biochemistry and Molecular Biology (Faculty of Biology)
Education
Source: Self-asserted source
Mario E. Valdés-Tresanco

Works (14)

Structural Modeling of Nanobodies: A Benchmark of State-of-the-Art Artificial Intelligence Programs

Molecules
2023-05 | Journal article | Author
DOI: 10.3390/molecules28103991
Contributors: Valdés-Tresanco MS; Mario E. Valdés-Tresanco; Jiménez-Gutiérrez, D.E.; Ernesto Moreno
Source: check_circle
Multidisciplinary Digital Publishing Institute

Origin of the Phosphoprotein Phosphatase (PPP) sequence family in Bacteria: Critical ancestral sequence changes, radiation patterns and substrate binding features

BBA Advances
2021 | Journal article
DOI: 10.1016/j.bbadva.2021.100005
Part of ISSN: 2667-1603
Source: Self-asserted source
Mario E. Valdés-Tresanco

The origin and radiation of the phosphoprotein phosphatase (PPP) enzymes of Eukaryotes

Scientific Reports
2021-12 | Journal article
DOI: 10.1038/s41598-021-93206-8
Part of ISSN: 2045-2322
Source: Self-asserted source
Mario E. Valdés-Tresanco

gmx_MMPBSA: A New Tool to Perform End-State Free Energy Calculations with GROMACS

Journal of Chemical Theory and Computation
2021-09-29 | Journal article
DOI: 10.1021/acs.jctc.1c00645
Part of ISSN: 1549-9618
Part of ISSN: 1549-9626
Source: Self-asserted source
Mario E. Valdés-Tresanco

Bacitracin is a non-competitive inhibitor of porcine M1 family neutral and glutamyl aminopeptidases

Natural Product Research
2021-09-02 | Journal article
DOI: 10.1080/14786419.2019.1678611
Part of ISSN: 1478-6419
Part of ISSN: 1478-6427
Source: Self-asserted source
Mario E. Valdés-Tresanco

AMDock: a versatile graphical tool for assisting molecular docking with Autodock Vina and Autodock4

Biology Direct
2020-12 | Journal article
DOI: 10.1186/s13062-020-00267-2
Part of ISSN: 1745-6150
Source: Self-asserted source
Mario E. Valdés-Tresanco

Bestatin and bacitracin inhibit porcine kidney cortex dipeptidyl peptidase IV activity and reduce human melanoma MeWo cell viability

International Journal of Biological Macromolecules
2020-12 | Journal article
DOI: 10.1016/j.ijbiomac.2020.08.157
Part of ISSN: 0141-8130
Source: Self-asserted source
Mario E. Valdés-Tresanco

Biochemical evidences for M1-, M17- and M18-like aminopeptidases in marine invertebrates from Cuban coastline

Zeitschrift für Naturforschung C
2020-11-26 | Journal article
DOI: 10.1515/znc-2019-0169
Part of ISSN: 1865-7125
Part of ISSN: 0939-5075
Source: Self-asserted source
Mario E. Valdés-Tresanco

Understanding the disrupting mechanism of the Tau aggregation motif “ 306 VQIVYK 311 ” by phenylthiazolyl‐hydrazides inhibitors

Journal of Molecular Recognition
2020-09 | Journal article
DOI: 10.1002/jmr.2848
Part of ISSN: 0952-3499
Part of ISSN: 1099-1352
Source: Self-asserted source
Mario E. Valdés-Tresanco

Membrane remodeling by the lytic fragment of sticholysin II: implications for the toroidal pore model

Biophysical Journal
2019-09 | Journal article
DOI: 10.1016/j.bpj.2019.09.018
Part of ISSN: 0006-3495
Source: Self-asserted source
Mario E. Valdés-Tresanco

Hexahydropyrrolo[2,3-b]indole compounds as potential therapeutics for Alzheimer Disease

ACS Chemical Neuroscience
2019-09-23 | Journal article
DOI: 10.1021/acschemneuro.9b00297
Part of ISSN: 1948-7193
Part of ISSN: 1948-7193
Source: Self-asserted source
Mario E. Valdés-Tresanco

Discovery of potent and selective inhibitors of the Escherichia coli M1-aminopeptidase via multicomponent solid-phase synthesis of tetrazole-peptidomimetics

European Journal of Medicinal Chemistry
2019-02 | Journal article
DOI: 10.1016/j.ejmech.2018.11.074
Part of ISSN: 0223-5234
Source: Self-asserted source
Mario E. Valdés-Tresanco

Protein surface roughness accounts for binding free energy of Plasmepsin II-ligand complexes

Journal of Molecular Recognition
2018-01 | Journal article
DOI: 10.1002/jmr.2661
Part of ISSN: 0952-3499
Source: Self-asserted source
Mario E. Valdés-Tresanco

Discovery of novel non-competitive inhibitors of mammalian neutral M1 aminopeptidase (APN)

Biochimie
2017-11 | Journal article
DOI: 10.1016/j.biochi.2017.09.015
Part of ISSN: 0300-9084
Source: Self-asserted source
Mario E. Valdés-Tresanco
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