Carlos Marcelino Rodriguez Lopez (0000-0002-9704-9788)

Personal information

Biography

I am interested on three main areas. My first research interest is functional epigenetics, or the effect of epigenetic processes on gene regulation. The second thread is the generation and use of epigenotyping tools to 1. study the importance of epigenetics on the expression of phenotypes; 2.identify stresses, describe the source material (tissue/organ/cell type) or to establish its physiological, developmental state or sex. This line of research has an applied side since epigenetic markers can be used in variety of fields such as medicine (nutrigenomics), forensics, agriculture, food quality and security. On a more fundamental side epigenetic markers are an effective forward genetic tool to identify genes regulated by epigenetic processes. The final thread that binds the two previous together is to study the importance of epigenetic effects on evolutionary biology both by facilitating adaptation to changing environments and by accelerating the ratio of base substitution.

Activities

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The University of Adelaide: Adelaide, South Australia, AU

2011-10-20 to present | Waite Campus Epigenetics coordinator (Agriculture Food and Wine)

Employment

Carlos Marcelino Rodriguez Lopez

https://orcid.org/0000-0002-9704-9788

Personal information

Other IDs

Biography

Activities

Employment (1)

The University of Adelaide: Adelaide, South Australia, AU

Funding (10)

Improving Phosphorus Recovery in Aquaponic Systems Through Environmental Manipulation of the Plant Rhizosphere Microbiota

Harnessing epigenetic memory stress for the development of locally adapted cultivars in perennial crops

Implications of epigenetic rejuvenation during vegetative propagation for the production of locally adapted perennial crop cultivars

Australian Research Council Training Centre for Innovative Wine Production

Breeding drought and heat tolerant grapevines using epigenetic tools

• Diagnosing the response of Calendula officinalis to saline water irrigation

• Demonstrating the potential of mobile RNAs for grafted epibreeding- a paradigm shift for plant and animal breeding

• Epigenetic control of wine quality in response to grapevine age

• The exploitation Of Variably Methylated Epigenetic Markers ' Sentinels' In Drug Discovery

• Detection of nucleotide modifications in nucleic acid sequence

Works (50 of 66)

Transcriptome Analysis Reveals Long-Term Somatic Memory of Stress in The Woody Perennial Crop, GrapevineVitis Viniferacv. Cabernet Sauvignon

Grapevine Rootstock and Scion Genotypes’ Symbiosis with Soil Microbiome: A Machine Learning Revelation for Climate-Resilient Viticulture

Is developmental plasticity triggered by DNA methylation changes in the invasive cane toad (Rhinella marina)?

Multi-Omics Insights into Grapevine Ecodormancy to Budburst Transition: Interplay of Gene Expression, miRNA Regulation, and DNA Methylation

Epigenetic differences between wild and cultivated grapevines highlight the contribution of DNA methylation during crop domestication

Phylogenomics reveals extensive introgression and a case of mito-nuclear discordance in the killifish genus Kryptolebias

Additive and non-additive epigenetic signatures of natural hybridization between fish species with different mating systems

Tissue and regional expression patterns of dicistronic tRNAmRNA transcripts in grapevine (Vitis vinifera) and their evolutionary co-appearance with vasculature in land plants

Identification of marker-trait associated SNPs for fruit weight and plant height in a wild and domesticated jujube fruit tree (Ziziphus spp.) collection using genotyping-by-sequencing

The Regulation of Plant Vegetative Phase Transition and Rejuvenation: miRNAs, a Key Regulator

Against the Odds: Hybrid Zones between Mangrove Killifish Species with Different Mating Systems

Genetic similarity enhances the strength of the relationship between gut bacteria and host DNA methylation

Parental bias in expression and interaction of genes in the equine placenta

Wine Terroir and the Soil Bacteria. An Amplicon Sequencing Based Assessment of the Barossa Valley and Its Sub-Regions

Accumulation of mutations in genes associated with sexual reproduction contributed to the domestication of a vegetatively propagated staple crop, enset

The gut bacteria of an invasive amphibian respond to the dual challenges of range-expansion and parasite attack

Greenhouse Spatial Effects Detected in the Barley (Hordeum vulgare L.) Epigenome Underlie Stochasticity of DNA Methylation

Shotgun metagenomic sequencing data of sunflower rhizosphere microbial community in South Africa

A comparison of nonlethal sampling methods for amphibian gut microbiome analyses

Atlas of Age- and Tissue-Specific DNA Methylation during Early Development of Barley (Hordeum vulgare)

Library Preparation for Whole Genome Bisulfite Sequencing of Plant Genomes

A method to generate multilocus barcodes of pinned insect specimens using MiSeq

Breeding for Beneficial Microbial Communities Using Epigenomics

chromoMap: An R package for Interactive Visualization and Annotation of Chromosomes

Common garden experiment reveals altered nutritional values and DNA methylation profiles in micropropagated three elite Ghanaian sweet potato genotypes

Salt Stress Induces Non-CG Methylation in Coding Regions of Barley Seedlings (Hordeum vulgare)

msgbsR: An R package for analysing methylation-sensitive restriction enzyme sequencing data

Global DNA methylation patterns can play a role in defining terroir in grapevine (Vitis vinifera cv Shiraz)

Effect of vine age on vine performance of Shiraz in the Barossa Valley, Australia

A Concise Review on Multi-Omics Data Integration for Terroir Analysis in Vitis vinifera

Botrytis cinerea loss and restoration of virulence during in vitro culture follows flux in global DNA methylation

Effect of cryopreservation and post-cryopreservation somatic embryogenesis on the epigenetic fidelity of cocoa (Theobroma cacao L.)

Epigenetic-induced alterations in sex-ratios in response to climate change: An epigenetic trap?

Recent progress towards understanding the role of DNA methylation in human placental development

DNA methylation biomarkers for predicting pregnancy complications

Epi-fingerprinting and epi-interventions for improved crop production and food quality

Epigenetic regulation of sex-ratios may explain natural variation in self-fertilization rates

Protected areas of Spain preserve the genetic diversity of Quercus ilex L. irrespective of glacial refugia

Meristem micropropagation of cassava (Manihot esculenta) evokes genome-wide changes in DNA methylation

Epigenetic rather than genetic factors may explain phenotypic divergence between coastal populations of diploid and tetraploid Limonium spp. (Plumbaginaceae) in Portugal

Pre-conditioning the epigenetic response to high vapor pressure deficit increases the drought tolerance of Arabidopsis thaliana

Transgenerational, dynamic methylation of stomata genes in response to low relative humidity

A Hypomethylated population of Brassica rapa for forward and reverse Epi-genetics

Detection and quantification of tissue of origin in salmon and veal products using methylation sensitive AFLPs

Diferential Effect of Three Base Modifications on DNA Thermostability Revealed by High Resolution Melting

Differential effect of three base modifications on DNA thermostability revealed by high resolution melting

Low relative humidity triggers RNA-directed de novo DNA methylation and suppression of genes controlling stomatal development

Retinoic-Acid-induced downregulation of the expression of the 67 KDa Laminin Receptor correlates with reduced biological aggressiveness of human neuroblastoma cells

Cytosine methylation regulates oviposition in the pathogenic blood fluke Schistosoma mansoni

Detection of somaclonal variation during cocoa somatic embryogenesis characterised using cleaved amplified polymorphic sequence and the new freeware Artbio

Peer review (1 review for 1 publication/grant)