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Scopus Author ID: 57219785517

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Employment (2)

Cincinnati Children's Research Foundation: Cincinnati, OH, US

2018-01-29 to present | Research Assistant (Center for Autoimmune Genomics and Etiology)
Employment
Source: Self-asserted source
Omer Donmez

Cincinnati Zoo and Botanical Garden: Cincinnati, Ohio, US

2011-06 to 2014-05 | Research Assistant ( Center for Conservation and Research of Endangered Wildlife (CREW) )
Employment
Source: Self-asserted source
Omer Donmez

Education and qualifications (2)

The University of Texas Graduate School of Biomedical Sciences: Houston, TX, US

2020-08-12 to 2024-05-07 | Master of Science in Biomedical Informatics (School of Biomedical Informatics)
Education
Source: Self-asserted source
Omer Donmez

University of Cincinnati: Cincinnati, OH, US

2010-09-27 to 2014-04-30 | Environmental Studies (Environmental Studies)
Education
Source: Self-asserted source
Omer Donmez

Works (17)

Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity

bioRxiv
2024 | Other
DOI: 10.1101/2024.04.12.588762
EID:

2-s2.0-85197973248

Part of ISSN: 26928205
Contributors: Sayeed, K.; Parameswaran, S.; Beucler, M.J.; Edsall, L.E.; VonHandorf, A.; Crowther, A.; Donmez, O.; Hass, M.; Richards, S.; Forney, C. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier

Macrophage memories of early-life injury drive neonatal nociceptive priming

Cell Reports
2024 | Journal article
DOI: 10.1016/j.celrep.2024.114129
EID:

2-s2.0-85190539205

Part of ISSN: 22111247
Contributors: Dourson, A.J.; Fadaka, A.O.; Warshak, A.M.; Paranjpe, A.; Weinhaus, B.; Queme, L.F.; Hofmann, M.C.; Evans, H.M.; Donmez, O.A.; Forney, C. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
grade
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Shared and distinct interactions of type 1 and type 2 Epstein-Barr Nuclear Antigen 2 with the human genome

BMC Genomics
2024 | Journal article
DOI: 10.1186/s12864-024-10183-8
EID:

2-s2.0-85187525011

Part of ISSN: 14712164
Contributors: Viel, K.C.M.F.; Parameswaran, S.; Donmez, O.A.; Forney, C.R.; Hass, M.R.; Yin, C.; Jones, S.H.; Prosser, H.K.; Diouf, A.A.; Gittens, O.E. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
grade
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Systematic identification of genotype-dependent enhancer variants in eosinophilic esophagitis

American Journal of Human Genetics
2024 | Journal article
DOI: 10.1016/j.ajhg.2023.12.008
EID:

2-s2.0-85183486282

Part of ISSN: 15376605 00029297
Contributors: Shook, M.S.; Lu, X.; Chen, X.; Parameswaran, S.; Edsall, L.; Trimarchi, M.P.; Ernst, K.; Granitto, M.; Forney, C.; Donmez, O.A. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
grade
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Effector memory T cells induce innate inflammation by triggering DNA damage and a non-canonical STING pathway in dendritic cells

Cell Reports
2023 | Journal article
DOI: 10.1016/j.celrep.2023.113180
EID:

2-s2.0-85174745115

Part of ISSN: 22111247
Contributors: Meibers, H.E.; Warrick, K.A.; VonHandorf, A.; Vallez, C.N.; Kawarizadeh, K.; Saha, I.; Donmez, O.; Jain, V.G.; Kottyan, L.C.; Weirauch, M.T. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
grade
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Macrophage Epigenetic Memories of Early Life Injury Drive Neonatal Nociceptive Priming

SSRN
2023 | Other
DOI: 10.2139/ssrn.4376279
EID:

2-s2.0-85150004153

Part of ISSN: 15565068
Contributors: Dourson, A.J.; Fadaka, A.O.; Warshak, A.M.; Paranjpe, A.; Weinhaus, B.; Queme, L.F.; Hofmann, M.C.; Evans, H.M.; Donmez, O.A.; Forney, C. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier

Macrophage epigenetic memories of early life injury drive neonatal nociceptive priming.

bioRxiv
2023 | Other
DOI: 10.1101/2023.02.13.528015
EID:

2-s2.0-85182736376

Part of ISSN: 26928205
Contributors: Dourson, A.J.; Fadaka, A.O.; Warshak, A.M.; Paranjpe, A.; Weinhaus, B.; Queme, L.F.; Hofmann, M.C.; Evans, H.M.; Donmez, O.A.; Forney, C. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier

maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks

PLoS Computational Biology
2023 | Journal article
DOI: 10.1371/journal.pcbi.1010863
EID:

2-s2.0-85147893834

Part of ISSN: 15537358 1553734X
Contributors: Cazares, T.A.; Rizvi, F.W.; Iyer, B.; Chen, X.; Kotliar, M.; Bejjani, A.T.; Wayman, J.A.; Donmez, O.; Wronowski, B.; Parameswaran, S. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
grade
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Epigenetic and transcriptional dysregulation in CD4+ T cells in patients with atopic dermatitis

PLoS Genetics
2022 | Journal article
DOI: 10.1371/journal.pgen.1009973
EID:

2-s2.0-85131106408

Part of ISSN: 15537404 15537390
Contributors: Eapen, A.A.; Parameswaran, S.; Forney, C.; Edsall, L.E.; Miller, D.; Donmez, O.; Dunn, K.; Lu, X.; Granitto, M.; Rowden, H. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
grade
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maxATAC: genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks

bioRxiv
2022 | Other
DOI: 10.1101/2022.01.28.478235
EID:

2-s2.0-85136840003

Part of ISSN: 26928205
Contributors: Cazares, T.A.; Rizvi, F.W.; Iyer, B.; Chen, X.; Kotliar, M.; Bejjani, A.T.; Wayman, J.A.; Donmez, O.; Wronowski, B.; Parameswaran, S. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
grade
Preferred source (of 2)‎

Epigenetic and Transcriptional Dysregulation in CD4+ T cells of Patients with Atopic Dermatitis

bioRxiv
2021 | Other
DOI: 10.1101/2021.12.03.471059
EID:

2-s2.0-85123188605

Part of ISSN: 26928205
Contributors: Eapen, A.A.; Parameswaran, S.; Forney, C.; Edsall, L.E.; Miller, D.; Donmez, O.; Dunn, K.; Lu, X.; Granitto, M.; Rowden, H. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
grade
Preferred source (of 2)‎

Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets

PLoS Genetics
2021 | Journal article
DOI: 10.1371/journal.pgen.1009574
EID:

2-s2.0-85108162344

Part of ISSN: 15537404 15537390
Contributors: Hass, M.R.; Brissette, D.; Parameswaran, S.; Pujato, M.; Donmez, O.; Kottyan, L.C.; Weirauch, M.T.; Kopan, R.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
grade
Preferred source (of 2)‎

Epstein–Barr virus nuclear antigen 2 extensively rewires the human chromatin landscape at autoimmune risk loci

Genome Research
2021-12 | Journal article
DOI: 10.1101/gr.264705.120
Part of ISSN: 1088-9051
Part of ISSN: 1549-5469
Contributors: Omer Donmez
Source: Self-asserted source
Omer Donmez
grade
Preferred source (of 2)‎

Global discovery of lupus genetic risk variant allelic enhancer activity

Nature Communications
2021-12 | Journal article
DOI: 10.1038/s41467-021-21854-5
Part of ISSN: 2041-1723
Contributors: Omer Donmez
Source: Self-asserted source
Omer Donmez
grade
Preferred source (of 2)‎

Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci

bioRxiv
2020 | Other
DOI: 10.1101/2020.04.15.043612
EID:

2-s2.0-85098896686

Part of ISSN: 26928205
Contributors: Hong, T.; Donmez, O.; Miller, D.; Forney, C.; Lape, M.; Parameswaran, S.; Just Ribeiro, M.S.; Liang, J.; Magnusen, A.; Miller, W. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier

Genome-wide discovery of SLE genetic risk variant allelic enhancer activity

bioRxiv
2020 | Other
DOI: 10.1101/2020.01.20.906701
EID:

2-s2.0-85095560798

Part of ISSN: 26928205
Contributors: Lu, X.; Chen, X.; Forney, C.; Donmez, O.; Miller, D.; Parameswaran, S.; Hong, T.; Huang, Y.; Pujato, M.; Cazares, T. et al.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier

Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets

bioRxiv
2020 | Other
DOI: 10.1101/2020.09.25.313767
EID:

2-s2.0-85098908130

Part of ISSN: 26928205
Contributors: Hass, M.R.; Brisette, D.; Parameswaran, S.; Pujato, M.; Donmez, O.; Kottyan, L.C.; Weirauch, M.T.; Kopan, R.
Source: Self-asserted source
Omer Donmez via Scopus - Elsevier
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