Personal information

fish, environmental DNA (eDNA), metabarcoding, phylogeny, evolution
Japan

Activities

Employment (2)

Natural History Museum and Institute, Chiba: Chiba, JP

2016-04-01 to present | Department Head (Ecology and Environmental Sciences)
Employment
Source: Self-asserted source
Masaki Miya

Chiba University: Chiba, JP

2012-04-01 to 2014-03-31 | Adjunct Professor (Department of Sciences)
Employment
Source: Self-asserted source
Masaki Miya

Education and qualifications (1)

Ocean Research Institute, University of Tokyo: Nakano, Tokyo, JP

1982-04-01 to 1987-03-31 | Ph.D. (Plankton Department)
Education
Source: Self-asserted source
Masaki Miya

Funding (1)

Development and applications of novel biodiversity monitoring methods using environmental DNA from fishes

2013-10 to 2019-03 | Grant
Japan Science and Technology Agency (Tokyo, JP)
GRANT_NUMBER:

JMPJ- CR13A2

Source: Self-asserted source
Masaki Miya

Works (50 of 156)

Items per page:
Page 1 of 4

Comparing local- and regional-scale estimations of the diversity of stream fish using eDNA metabarcoding and conventional observation methods

Freshwater Biology
2018 | Journal article
Source: Self-asserted source
Masaki Miya

Demonstration of the potential of environmental DNA as a tool for the detection of avian species

Scientific Reports
2018 | Journal article
Source: Self-asserted source
Masaki Miya

MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding

Molecular Biology and Evolution
2018 | Journal article
Source: Self-asserted source
Masaki Miya

Multi-locus phylogenetic analysis of the first molecular data from the rare and monotypic Amarsipidae places the family within the Pelagia and highlights limitations of existing data sets in resolving pelagian interrelationships

Molecular Phylogenetics and Evolution
2018 | Journal article
Source: Self-asserted source
Masaki Miya

Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing

Metabarcoding and Metagenomics
2018 | Journal article
Source: Self-asserted source
Masaki Miya

Resolving deep-sea pelagic saccopharyngiform eel mysteries: Identification of Neocyema and Monognathidae leptocephali and establishment of a new fish family "Neocyematidae" based on larvae, adults and mitogenomic gene orders

PLoS ONE
2018 | Journal article
Source: Self-asserted source
Masaki Miya

Environmental DNA enables detection of terrestrial mammals from forest pond water

Molecular Ecology Resources
2017 | Journal article
Source: Self-asserted source
Masaki Miya

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

Scientific Reports
2017 | Journal article
Source: Self-asserted source
Masaki Miya

Environmental DNA metabarcoding with MiFish primer reveals marine fish fauna of Tsushima Island, Nagasaki for establishing a marine protected area

2017 | Journal article
Source: Self-asserted source
Masaki Miya

Evolution of bidirectional sex change and gonochorism in fishes of the gobiid genera Trimma, Priolepis, and Trimmatom

The Science of Nature
2017 | Journal article
Source: Self-asserted source
Masaki Miya

Evolutionary affinities of the unfathomable Parabrotulidae: Molecular data indicate placement of Parabrotula within the family Bythitidae, Ophidiiformes

Molecular Phylogenetics and Evolution
2017 | Journal article
Source: Self-asserted source
Masaki Miya

Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific

PLoS ONE
2017 | Journal article
Source: Self-asserted source
Masaki Miya

Phylogenetic classification of bony fishes

BMC Evolutionary Biology
2017 | Journal article
Source: Self-asserted source
Masaki Miya

Phylogenetic position of the rainbow sardine Dussumieria (Dussumieriidae) and its bearing on the early evolution of the Clupeioidei

Gene
2017 | Journal article
Source: Self-asserted source
Masaki Miya

Tropical-forest mammals as detected by environmental DNA at natural saltlicks

Biological Conservation
2017 | Journal article
Source: Self-asserted source
Masaki Miya

Environmental DNA provides a ‘snapshot’ of fish distribution: a case study of Japanese jack mackerel in Maizuru Bay, Sea of Japan

PLoS ONE
2016 | Journal article
Source: Self-asserted source
Masaki Miya

Preservation obscures pelagic deep-sea fish diversity: doubling the number of sole-bearing opisthoproctids and resurrection of the genus Monacoa (Opisthoproctidae, Argentiniformes)

PLOS ONE
2016 | Journal article
Source: Self-asserted source
Masaki Miya

Structure and variation of the mitochondrial genome of fishes

BMC Genomics
2016 | Journal article
Source: Self-asserted source
Masaki Miya

Use of a filter cartridge for filtration of water samples and extraction of environmental DNA

Journal of Visualized Experiments
2016 | Journal article
Source: Self-asserted source
Masaki Miya

Wide distribution range of rhizobial symbionts associated with pantropical sea-dispersed legumes

Antonie van Leeuwenhoek
2016 | Journal article
Source: Self-asserted source
Masaki Miya

新たな魚類大系統 — 遺伝子で解き明かす魚類3万種の由来と現在

2016 | Other
Source: Self-asserted source
Masaki Miya

Composition of glycosaminoglycans in elasmobranchs including several deep-sea sharks: identification of chondroitin/dermatan sulfate from the dried fins of Isurus oxyrinchus and Prionace glauca

PLoS ONE
2015 | Journal article
Source: Self-asserted source
Masaki Miya

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

Royal Society Open Science
2015 | Journal article
Source: Self-asserted source
Masaki Miya

Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes)

Molecular Phylogenetics and Evolution
2015 | Journal article
Source: Self-asserted source
Masaki Miya

The mitogenomic contributions to molecular phylogenetics and evolution of fishes: a 15-year retrospect

Ichthyological Research
2015 | Journal article
Source: Self-asserted source
Masaki Miya

Mitochondrial genomic investigation of flatfish monophyly

Gene
2014 | Journal article
Source: Self-asserted source
Masaki Miya

Mitogenomic circumscription of a novel percomorph fish clade mainly comprising “Syngnathoidei” (Teleostei)

Gene
2014 | Journal article
Source: Self-asserted source
Masaki Miya

Mitogenomic phylogeny of the Percichthyidae and Centrarchiformes (Percomorphaceae): comparison with recent nuclear gene-based studies and simultaneous analysis

Gene
2014 | Journal article
Source: Self-asserted source
Masaki Miya

Phylogenetic relationships of Acheilognathidae (Cypriniformes: Cyprinoidea) as revealed from evidence of both nuclear and mitochondrial gene sequence variation: Evidence for necessary taxonomic revision in the family and the identification of cryptic

Molecular Phylogenetics and Evolution
2014 | Journal article
Source: Self-asserted source
Masaki Miya

Phylogeny of the Elopomorpha (Teleostei): Evidence from six nuclear and mitochondrial markers

Molecular Phylogenetics and Evolution
2014 | Journal article
Source: Self-asserted source
Masaki Miya

Evolutionary origin of the scombridae (tunas and mackerels): Members of a paleogene adaptive radiation with 14 other pelagic fish families

PLoS ONE
2013 | Journal article
Source: Self-asserted source
Masaki Miya

Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae)

Zootaxa
2013 | Journal article
Source: Self-asserted source
Masaki Miya

MitoFish and MitoAnnotator: A mitochondrial genome database of fish with an accurate and automatic annotation pipeline

Molecular Biology and Evolution
2013 | Journal article
Source: Self-asserted source
Masaki Miya

Mitogenomic evidence for an Indo-west Pacific origin of the Clupeoidei (Teleostei: Clupeiformes)

PLoS ONE
2013 | Journal article
Source: Self-asserted source
Masaki Miya

Mitogenomic sequences and evidence from unique gene rearrangements corroborate evolutionary relationships of myctophiformes (Neoteleostei)

BMC Evolutionary Biology
2013 | Journal article
Source: Self-asserted source
Masaki Miya

Phylogeny and biogeography of highly diverged freshwater fish species (Leuciscinae, Cyprinidae, Teleostei) inferred from mitochondrial genome analysis

Gene
2013 | Journal article
Source: Self-asserted source
Masaki Miya

Pike and salmon as sister taxa: detailed intraclade resolution and divergence time estimation of Esociformes+ Salmoniformes based on whole mitochondrial genome sequences

Gene
2013 | Journal article
Source: Self-asserted source
Masaki Miya

A molecular timescale for the evolution of the African freshwater fish family Kneriidae (Teleostei: Gonorynchiformes)

Ichthyological Research
2012 | Journal article
Source: Self-asserted source
Masaki Miya

Body plan convergence in the evolution of skates and rays (Chondrichthyes: Batoidea)

Molecular Phylogenetics and Evolution
2012 | Journal article
Source: Self-asserted source
Masaki Miya

Comparable ages for the independent origins of electrogenesis in African and South American weakly electric fishes

PLoS ONE
2012 | Journal article
Source: Self-asserted source
Masaki Miya

Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes)

Molecular Phylogenetics and Evolution
2012 | Journal article
Source: Self-asserted source
Masaki Miya

Phylogenetic placements of the barbin genera Discherodontus, Chagunius, and Hypselobarbus in the subfamily Cyprininae (Teleostei: Cypriniformes) and their relationships with other barbins

Zootaxa
2012 | Journal article
Source: Self-asserted source
Masaki Miya

A ‘living fossil’eel (Anguilliformes: Protanguillidae, fam. nov.) from an undersea cave in Palau

Proc. R. Soc. B
2011 | Journal article
Source: Self-asserted source
Masaki Miya

Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)

Zoological Journal of the Linnean Society
2011 | Journal article
Source: Self-asserted source
Masaki Miya

Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation

BMC Evolutionary Biology
2011 | Journal article
Source: Self-asserted source
Masaki Miya

Multiple invasions into freshwater by pufferfishes (Teleostei: Tetraodontidae): a mitogenomic perspective

PLoS ONE
2011 | Journal article
Source: Self-asserted source
Masaki Miya

Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae)

Molecular Phylogenetics and Evolution
2011 | Journal article
Source: Self-asserted source
Masaki Miya

Biogeography and evolution of the Carassius auratus-complex in East Asia

BMC Evolutionary Biology
2010 | Journal article
Source: Self-asserted source
Masaki Miya

Deep-ocean origin of the freshwater eels

Biology Letters
2010 | Journal article
Source: Self-asserted source
Masaki Miya

Evolutionary history of anglerfishes (Teleostei: Lophiiformes): a mitogenomic perspective

BMC Evolutionary Biology
2010 | Journal article
Source: Self-asserted source
Masaki Miya
Items per page:
Page 1 of 4

Peer review (1 review for 1 publication/grant)

Review activity for Methods in ecology and evolution. (1)