Personal information

Emails & domains

Verified email domains

Websites & social links

Personal website

Keywords

topological data analysis, plant morphology, euler characteristic transform, X-ray CT scan processing, mathematical biology

Countries

United States, Mexico

Activities

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Employment (2)

University of Missouri: Columbia, Missouri, US

2023-07 to present | PFFIE Postdoctoral Fellow (Division of Plant Sciences & Technology)
Employment
Source: Self-asserted source
Erik J. Amézquita

University of Missouri: Columbia, Missouri, US

2023-07-01 to present | PFFIE Postdoctoral Fellow (Department of Mathematics)
Employment
Source: Self-asserted source
Erik J. Amézquita

Education and qualifications (2)

Michigan State University: East Lansing, MI, US

2018-08 to 2023-05 | PhD (Computational Mathematics, Science, and Engineering)
Education
Source: Self-asserted source
Erik J. Amézquita

Universidad de Guanajuato: Guanajuato, Guanajuato, MX

2013-08 to 2018-05 | Bachelor in Mathematics (Math Department)
Education
Source: Self-asserted source
Erik J. Amézquita

Professional activities (2)

Michigan State University: East Lansing, MI, US

2021-09-01 to present | President of the CMSE Graduate Student Organization (Computational Mathematics, Science, and Engineering)
Service
Source: Self-asserted source
Erik J. Amézquita

Sociedad Matemática Mexicana: Mexico City, CDMX, MX

2018-10-15 | Premio Sotero Prieto
Distinction
Source: Self-asserted source
Erik J. Amézquita

Works (9)

Allometry and volumes in a nutshell: Analyzing walnut morphology using three‐dimensional X‐ray computed tomography

The Plant Phenome Journal
2024-12 | Journal article
DOI: 10.1002/ppj2.20095
Contributors: Erik J. Amézquita; Michelle Y. Quigley; Patrick J. Brown; Elizabeth Munch; Daniel H. Chitwood
Source: check_circle
Crossref

The early dodder gets the host: decoding the coiling patterns of Cuscuta campestris with automated image processing

Plant Cell Reports
2024-12 | Journal article
DOI: 10.1007/s00299-024-03337-1
Contributors: Max Bentelspacher; Erik J. Amézquita; Supral Adhikari; Jaime Barros; So-Yon Park
Source: check_circle
Crossref

The Early Dodder Gets the Host: Decoding the Coiling Patterns ofCuscuta campestriswith Automated Image Processing

2024-03-04 | Preprint
DOI: 10.1101/2024.02.29.582789
Contributors: Max Bentelspacher; Erik J. Amézquita; Supral Adhikari; Jaime Barros; So-Yon Park
Source: check_circle
Crossref

The shape of aroma: Measuring and modeling citrus oil gland distribution

PLANTS, PEOPLE, PLANET
2023-09 | Journal article
DOI: 10.1002/ppp3.10333
Contributors: Erik J. Amézquita; Michelle Y. Quigley; Tim Ophelders; Danelle Seymour; Elizabeth Munch; Daniel H. Chitwood
Source: check_circle
Crossref

Genomics data analysis via spectral shape and topology

PLOS ONE
2023-04-26 | Journal article
DOI: 10.1371/journal.pone.0284820
Contributors: Erik J. Amézquita; Hong Qin; Farzana Nasrin; Kathleen M. Storey; Masato Yoshizawa
Source: check_circle
Crossref

A critical analysis of plant science literature reveals ongoing inequities

Proceedings of the National Academy of Sciences
2023-03-07 | Journal article
DOI: 10.1073/pnas.2217564120
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Contributors: Rose A. Marks; Erik J. Amézquita; Sarah Percival; Alejandra Rougon-Cardoso; Claudia Chibici-Revneanu; Shandry M. Tebele; jill farrant; Daniel H. Chitwood; Robert VanBuren
Source: Self-asserted source
Erik J. Amézquita

Plants & Python: A series of lessons in coding, plant biology, computation, and bioinformatics

The Plant Cell
2022-07-04 | Journal article | Resources
DOI: 10.1093/plcell/koac187
Part of ISSN: 1040-4651
Part of ISSN: 1532-298X
Contributors: Erik J. Amézquita; Robert VanBuren; Daniel H. Chitwood; Alejandra Rougon-Cardoso; Evelia L. Coss-Navarrete; Aarón Espinosa-Jaime; Omar Andrés Gonzalez-Iturbide; Alicia C. Luckie-Duque; Eddy Mendoza-Galindo; Jeremy Pardo et al.
Source: Self-asserted source
Erik J. Amézquita

Measuring hidden phenotype: quantifying the shape of barley seeds using the Euler characteristic transform

in silico Plants
2022-01-01 | Journal article
DOI: 10.1093/insilicoplants/diab033
Part of ISSN: 2517-5025
Source: Self-asserted source
Erik J. Amézquita

The shape of things to come: Topological data analysis and biology, from molecules to organisms

Developmental Dynamics
2020-07 | Journal article
DOI: 10.1002/dvdy.175
Contributors: Erik J. Amézquita; Michelle Y. Quigley; Tim Ophelders; Elizabeth Munch; Daniel H. Chitwood
Source: check_circle
Crossref
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