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Activities

Employment (1)

Fraunhofer-Institut für Algorithmen und Wissenschaftliches Rechnen: Sankt Augustin, Nordrhein-Westfalen, DE

Bioinformatics Research Student
Employment
Source: Self-asserted source
Sarah Mubeen

Education and qualifications (2)

University of Toronto: Toronto, ON, CA

BSc Human Biology and Neuroscience
Education
Source: Self-asserted source
Sarah Mubeen

Rheinische Friedrich-Wilhelms-Universität Bonn: Bonn, Nordrhein-Westfalen, DE

MSc Life Science Informatics
Education
Source: Self-asserted source
Sarah Mubeen

Works (21)

On the influence of several factors on pathway enrichment analysis

Briefings in Bioinformatics
2022-05-13 | Journal article
Contributors: Sarah Mubeen; Alpha Tom Kodamullil; Martin Hofmann-Apitius; Daniel Domingo-Fernández
Source: check_circle
Crossref

Integrative analysis to identify shared mechanisms between schizophrenia and bipolar disorder and their comorbidities

2022-03-08 | Preprint
Contributors: Vinay Srinivas Bharadhwaj; Sarah Mubeen; Astghik Sargsyan; Geena Mariya Jose; Stefan Geissler; Martin Hofmann-Apitius; Daniel Domingo-Fernández; Alpha Tom Kodamullil
Source: check_circle
Crossref

Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery

PLOS Computational Biology
2022-02-25 | Journal article
Contributors: Daniel Domingo-Fernández; Carl Herrmann; Yojana Gadiya; Abhishek Patel; Sarah Mubeen; Daniel Rivas-Barragan; Chris W. Diana; Biswapriya B. Misra; David Healey; Joe Rokicki et al.
Source: check_circle
Crossref

Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets

2022-01-20 | Preprint
Contributors: Rebeca Queiroz Figueiredo; Sara Díaz del Ser; Tamara Raschka; Martin Hofmann-Apitius; Alpha Tom Kodamullil; Sarah Mubeen; Daniel Domingo-Fernández
Source: check_circle
Crossref

Curating, collecting, and cataloguing global COVID-19 datasets for the aim of predicting personalized risk

2021-11-15 | Other
Contributors: Sepehr Golriz Khatami; Maria Francesca Russo; Daniel Domingo-Fernández; Andrea Zaliani; Sarah Mubeen; Yojana Gadiya; Astghik Sargsyan; Reagon Karki; Stephan Gebel; Ram Kumar Ruppa Surulinathan et al.
Source: check_circle
Crossref

Using predictive machine learning models for drug response simulation by calibrating patient-specific pathway signatures

npj Systems Biology and Applications
2021-10-27 | Journal article
Contributors: Sepehr Golriz Khatami; Sarah Mubeen; Vinay Srinivas Bharadhwaj; Alpha Tom Kodamullil; Martin Hofmann-Apitius; Daniel Domingo-Fernández
Source: check_circle
Crossref

Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery

2021-09-15 | Other
Contributors: Daniel Domingo-Fernández; Yojana Gadiya; Abhishek Patel; Sarah Mubeen; Daniel Rivas-Barragan; Chris W. Diana; Biswapriya B. Misra; David Healey; Joe Rokicki; Viswa Colluru
Source: check_circle
Crossref

Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms

Nucleic Acids Research
2021-08-20 | Journal article
Contributors: Rebeca Queiroz Figueiredo; Tamara Raschka; Alpha Tom Kodamullil; Martin Hofmann-Apitius; Sarah Mubeen; Daniel Domingo-Fernández
Source: check_circle
Crossref

DecoPath: a web application for decoding pathway enrichment analysis

NAR Genomics and Bioinformatics
2021-06-23 | Journal article
Contributors: Sarah Mubeen; Vinay S Bharadhwaj; Yojana Gadiya; Martin Hofmann-Apitius; Alpha T Kodamullil; Daniel Domingo-Fernández
Source: check_circle
Crossref

DecoPath: A web application for decoding pathway enrichment analysis

2021-05-23 | Other
Contributors: Sarah Mubeen; Vinay Srinivas Bharadhwaj; Yojana Gadiya; Martin Hofmann-Apitius; Alpha Tom Kodamullil; Daniel Domingo-Fernández
Source: check_circle
Crossref

MultiPaths: a Python framework for analyzing multi-layer biological networks using diffusion algorithms

Bioinformatics
2021-04-09 | Journal article
Contributors: Josep Marín-Llaó; Sarah Mubeen; Alexandre Perera-Lluna; Martin Hofmann-Apitius; Sergio Picart-Armada; Daniel Domingo-Fernández; Lenore Cowen
Source: check_circle
Crossref

Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms

2021-03-02 | Preprint
Contributors: Rebeca Queiroz Figueiredo; Tamara Raschka; Alpha Tom Kodamullil; Martin Hofmann-Apitius; Sarah Mubeen; Daniel Domingo-Fernández
Source: check_circle
Crossref

Using predictive machine learning models for drug response simulation by calibrating patient-specific pathway signatures

2020-12-07 | Other
Contributors: Sepehr Golriz Khatami; Sarah Mubeen; Vinay Srinivas Bharadhwaj; Alpha Tom Kodamullil; Martin Hofmann-Apitius; Daniel Domingo-Fernández
Source: check_circle
Crossref

Drug2ways: Reasoning over causal paths in biological networks for drug discovery

PLOS Computational Biology
2020-12-02 | Journal article
Contributors: Daniel Rivas-Barragan; James R. Faeder; Sarah Mubeen; Francesc Guim Bernat; Martin Hofmann-Apitius; Daniel Domingo-Fernández
Source: check_circle
Crossref

CLEP: A Hybrid Data- and Knowledge-Driven Framework for Generating Patient Representations

2020-08-22 | Preprint
Contributors: Vinay Srinivas Bharadhwaj; Mehdi Ali; Colin Birkenbihl; Sarah Mubeen; Jens Lehmann; Martin Hofmann-Apitius; Charles Tapley Hoyt; Daniel Domingo-Fernández
Source: check_circle
Crossref

MultiPaths: a Python framework for analyzing multi-layer biological networks using diffusion algorithms

2020-08-12 | Preprint
Contributors: Josep Marín-Llaó; Sarah Mubeen; Alexandre Perera-Lluna; Martin Hofmann-Apitius; Sergio Picart-Armada; Daniel Domingo-Fernández
Source: check_circle
Crossref

Drug2ways: Reasoning over causal paths in biological networks for drug discovery

2020-06-08 | Preprint
Contributors: Daniel Rivas-Barragan; Sarah Mubeen; Francesc Guim Bernat; Martin Hofmann-Apitius; Daniel Domingo-Fernández
Source: check_circle
Crossref

Data science in neurodegenerative disease: its capabilities, limitations, and perspectives

Current Opinion in Neurology
2020-04 | Journal article
Part of ISSN: 1350-7540
Part of ISSN: 1473-6551
Source: Self-asserted source
Sarah Mubeen

PathMe: merging and exploring mechanistic pathway knowledge

BMC Bioinformatics
2019-12 | Journal article
Part of ISSN: 1471-2105
Source: Self-asserted source
Sarah Mubeen

The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling

Frontiers in Genetics
2019-11-22 | Journal article
Part of ISSN: 1664-8021
Source: Self-asserted source
Sarah Mubeen

Integration of Structured Biological Data Sources using Biological Expression Language

2019-05-08 | Other
Contributors: Charles Tapley Hoyt; Daniel Domingo-Fernández; Sarah Mubeen; Josep Marin Llaó; Andrej Konotopez; Christian Ebeling; Colin Birkenbihl; Özlem Muslu; Bradley English; Simon Müller et al.
Source: check_circle
Crossref