Personal information

Websites & social links

NCSU
CGIBD
google scholar
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uga-igem 2016
uga-igem 2015
uga-igem 2014
uga-igem 2013

Other IDs

Loop profile: 757991

Keywords

Human microbiome, Anaerobe, Synthetic biology, Microbiology, Microbial ecology, Methanogen, Archaea

Biography

Current interests:
1. Microbiome and host health
2. Methanogenic archaea and methanogenesis
3. Archaea-bacterial interaction

Activities

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Employment (6)

North Carolina State University: Raleigh, US

2023-01-01 to present | Assistant Professor of Microbial Physiology (Plant and Microbial Biology)
Employment
Source: Self-asserted source
ZHE LYU

Baylor College of Medicine: Houston, Texas, US

2022-07-01 to 2022-12-31 | Assistant Professor of Translational Microbiome (Molecular Virology and Microbiology)
Employment
Source: Self-asserted source
ZHE LYU

Baylor College of Medicine: Houston, Texas, US

2022-07-01 to 2022-12-31 | Director of CMMR Cultivation Labs (Alkek Center for Metagenomics and Microbiome Research)
Employment
Source: Self-asserted source
ZHE LYU

Baylor College of Medicine: Houston, TX, US

2018-10-24 to 2022-07-01 | Assistant Lab Director (Molecular Virology and Microbiology)
Employment
Source: Self-asserted source
ZHE LYU

University of Georgia: Athens, GA, US

2012-12-12 to 2018-10-19 | Postdoctoral Research Associate (Microbiology)
Employment
Source: Self-asserted source
ZHE LYU

Shanghai Jiao Tong University: Shanghai, CN

2006-02 to 2006-05 | Research Internship (School of Life Science & Biotechnology)
Employment
Source: Self-asserted source
ZHE LYU

Education and qualifications (2)

China Agricultural University: Beijing, CN

2006-09-01 to 2012-12-12 | Ph.D (College of Resources & Environmental Sciences)
Education
Source: Self-asserted source
ZHE LYU

Shandong University: Jinan, Shandong, CN

2002-09-01 to 2006-07-01 | Bachelor of science (Microbiology)
Education
Source: Self-asserted source
ZHE LYU

Professional activities (4)

Frontiers Media SA: Lausanne, VD, CH

2019 to present | Associate Editor (Frontiers in Microbiology | Biology of Archaea)
Service
Source: Self-asserted source
ZHE LYU

American Society for Microbiology: Washington, DC, US

2016 to present | Judge/Abstract Reviewer (Annual Biomedical Research Conference for Minority Students)
Service
Source: Self-asserted source
ZHE LYU

American Society for Microbiology: Washington, DC, US

2014 to present
Membership
Source: Self-asserted source
ZHE LYU

National Science Foundation: Alexandria, VA, US

2021 to 2022 | Reviewer
Service
Source: Self-asserted source
ZHE LYU

Funding (1)

Microbiome Discovery and Mechanisms to Combat Antibiotic Resistance at Mucosal Surfaces

2021-03-01 to 2026-02-28 | Grant
National Institute of Allergy and Infectious Diseases (Bethesda, US)
URL: https://app.dimensions.ai/details/grant/grant.9615637
GRANT_NUMBER: U19AI157981
Source: Self-asserted source
ZHE LYU via DimensionsWizard

Works (29)

Editorial: Cross-boundary significance of methanogens - the methane moment and beyond

FRONTIERS IN MICROBIOLOGY
2024 | Other | Author
DOI: 10.3389/fmicb.2024.1434586
Contributors: ZHE LYU; Amelia-Elena Rotaru; Mark Pimentel; Cui-Jing Zhang; Simon K. -M. R. Rittmann; James G. Ferry
Source: check_circle
NC State University Libraries

Exploring the link between COVID-19 and gut microbiome at the community level

AMERICAN JOURNAL OF CLINICAL PATHOLOGY
2024 | Other | Author
DOI: 10.1093/ajcp/aqae129.284
Contributors: B. Li; A. Terwilliger; A. Maresso; R. Britton; Z. Yousefipour; E. Donnachie; ZHE LYU
Source: check_circle
NC State University Libraries

Editorial: The methane moment - Cross-boundary significance of methanogens: Preface

Frontiers in Microbiology
2022-11-14 | Journal article
DOI: 10.3389/fmicb.2022.1055494
Part of ISSN: 1664-302X
Contributors: ZHE LYU; Amelia-Elena Rotaru; Mark Pimentel; Cui-Jing Zhang; Simon K.-M. R. Rittmann
Source: Self-asserted source
ZHE LYU

Back to the Source: Molecular Identification of Methanogenic Archaea as Markers of Colonic Methane Production

Digestive Diseases and Sciences
2021-11 | Journal article
DOI: 10.1007/s10620-021-06839-0
Part of ISSN: 0163-2116
Part of ISSN: 1573-2568
Source: Self-asserted source
ZHE LYU

Tuning Gene Expression by Phosphate in the Methanogenic Archaeon Methanococcus maripaludis

ACS Synthetic Biology
2021-11-19 | Journal article
DOI: 10.1021/acssynbio.1c00322
Part of ISSN: 2161-5063
Part of ISSN: 2161-5063
Source: Self-asserted source
ZHE LYU

Data-Driven Models Reveal Mutant Cell Behaviors Important for Myxobacterial Aggregation

mSystems
2020-08-25 | Journal article
DOI: 10.1128/mSystems.00518-20
Contributors: Zhaoyang Zhang; Christopher R. Cotter; Zhe Lyu; Lawrence J. Shimkets; Oleg A. Igoshin; Michael Rust
Source: check_circle
Crossref

Data-driven models reveal mutant cell behaviors important for myxobacterial aggregation

[]
2020-02-10 | Preprint
DOI: 10.1101/2020.02.08.939462
Source: Self-asserted source
ZHE LYU
grade
Preferred source (of 2)‎

Posttranslational Methylation of Arginine in Methyl Coenzyme M Reductase Has a Profound Impact on both Methanogenesis and Growth of Methanococcus maripaludis

Journal of Bacteriology
2020-01 | Journal article
DOI: 10.1128/jb.00654-19
Part of ISSN: 0021-9193
Contributors: Zhe Lyu; Nana Shao; Chau-Wen Chou; Hao Shi; Ricky Patel; Evert C. Duin; William B. Whitman; Anke Becker
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

The Nbp35/ApbC homolog acts as a nonessential [4Fe‐4S] transfer protein in methanogenic archaea

FEBS Letters
2019-11 | Journal article
DOI: 10.1002/1873-3468.13673
Part of ISSN: 0014-5793
Contributors: Cuiping Zhao; Zhe Lyu; Feng Long; Taiwo Akinyemi; Kasidet Manakongtreecheep; Dieter Söll; William B. Whitman; David J. Vinyard; Yuchen Liu
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Transplanting the pathway engineering toolbox to methanogens

Current Opinion in Biotechnology
2019-10 | Journal article
DOI: 10.1016/j.copbio.2019.02.009
Part of ISSN: 0958-1669
Contributors: Zhe Lyu; William B Whitman
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Diversity and Taxonomy of Methanogens

Biogenesis of Hydrocarbons
2019-07 | Other
DOI: 10.1007/978-3-319-78108-2_5
Contributors: Zhe Lyu; Yuchen Liu
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Diversity and Taxonomy of Methanogens

Biogenesis of Hydrocarbons
2018 | Other
DOI: 10.1007/978-3-319-53114-4_5-2
Part of ISBN: 9783319531144
Contributors: Zhe Lyu; Yuchen Liu
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Methanogenesis

Current Biology
2018-07 | Journal article
DOI: 10.1016/j.cub.2018.05.021
Part of ISSN: 0960-9822
Contributors: Zhe Lyu; Nana Shao; Taiwo Akinyemi; William B. Whitman
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis

Journal of Bacteriology
2018-04-16 | Journal article
DOI: 10.1128/JB.00746-17
Contributors: Zhe Lyu; Chau-Wen Chou; Hao Shi; Liangliang Wang; Robel Ghebreab; Dennis Phillips; Yajun Yan; Evert C. Duin; William B. Whitman; William W. Metcalf
Source: check_circle
Crossref

Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments

The ISME Journal
2018-02 | Journal article
DOI: 10.1038/ismej.2017.173
Contributors: Zhe Lyu; Yahai Lu
Source: check_circle
Crossref

An Important Role for Purifying Selection in Archaeal Genome Evolution

mSystems
2017-10 | Journal article
DOI: 10.1128/msystems.00112-17
Contributors: Zhe Lyu; Zhi-Gang Li; Fei He; Ziding Zhang; Michael Rust
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search
grade
Preferred source (of 2)‎

Mmp10 is required for post-translational methylation of arginine at the active site of methyl-coenzyme M reductase

2017-10-30 | Other
DOI: 10.1101/211441
Contributors: Zhe Lyu; Chau-wen Chou; Hao Shi; Ricky Patel; Evert C. Duin; William B. Whitman
Source: check_circle
Crossref

Williamwhitmania taraxaci gen. nov., sp. nov., a proteolytic anaerobe with a novel type of cytology from Lake Untersee in Antarctica, description of Williamwhitmaniaceae fam. nov., and emendation of the order Bacteroidales Krieg 2012.

International journal of systematic and evolutionary microbiology
2017-09 | Journal article
DOI: 10.1099/ijsem.0.002266
PMID: 28905708
Source: Self-asserted source
ZHE LYU via Europe PubMed Central

Sanguibacter gelidistatuariae sp. nov., a novel psychrotolerant anaerobe from an ice sculpture in Antarctica, and emendation of descriptions for the family Sanguibacteraceae, the genus Sanguibacter and species S. antarcticus, S. inulinus, S. kedieii, S. marinus, S.soli and S. suarezii.

2017-02 | Journal article
DOI: 10.1099/ijsem.0.001838
PMID: 28150571
Contributors: Pikuta EV; Lyu Z; Williams MD; Patel NB; Liu Y; Hoover RB; Busse HJ; Lawson PA; Whitman WB
Source: Self-asserted source
ZHE LYU via Europe PubMed Central

Raineyella antarctica gen. nov., sp. nov., a psychrotolerant, d-amino-acid-utilizing anaerobe isolated from two geographic locations of the Southern Hemisphere.

2016-12 | Journal article
DOI: 10.1099/ijsem.0.001552
PMID: 27902285
Contributors: Pikuta EV; Menes RJ; Bruce AM; Lyu Z; Patel NB; Liu Y; Hoover RB; Busse HJ; Lawson PA; Whitman WB
Source: Self-asserted source
ZHE LYU via Europe PubMed Central

Evolution of the archaeal and mammalian information processing systems: towards an archaeal model for human disease.

2016-06 | Journal article
PMID: 27261368
Contributors: Lyu Z; Whitman WB
Source: Self-asserted source
ZHE LYU via Europe PubMed Central

Engineering the Autotroph Methanococcus maripaludis for Geraniol Production.

2016-02 | Journal article
PMID: 26886063
Contributors: Lyu Z; Jain R; Smith P; Fetchko T; Yan Y; Whitman WB
Source: Self-asserted source
ZHE LYU via Europe PubMed Central

Microbiological investigation of two chondrite meteorites: Murchison and Polonnaruwa

Instruments, Methods, and Missions for Astrobiology XVII
2015-09-04 | Conference paper
DOI: 10.1117/12.2191203
Contributors: Elena V. Pikuta; Zhe Lyu; William B. Whitman; Geneviev R. LaBrake; Jamie Wallis; Keerthi Wickramarathne; N. Chandra Wickramasinghe; Richard B. Hoover; Richard B. Hoover; Gilbert V. Levin et al.
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Molecular studies of anaerobic strains from Antarctica and their taxonomic identifications

Instruments, Methods, and Missions for Astrobiology XVII
2015-09-04 | Conference paper
DOI: 10.1117/12.2192787
Contributors: Zhe Lyu; Elena V. Pikuta; Jacob Hagel; Genevieve R. LaBrake; Richard B. Hoover; William B. Whitman; Richard B. Hoover; Gilbert V. Levin; Alexei Yu. Rozanov; Nalin C. Wickramasinghe
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Comparative genomics of three Methanocellales strains reveal novel taxonomic and metabolic features

Environmental Microbiology Reports
2015-02 | Journal article
DOI:

10.1111/1758-2229.12283
Contributors: Zhe Lyu; Yahai Lu
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search
grade
Preferred source (of 2)‎

Response of a paddy soil methanogen to syntrophic growth as revealed by transcriptional analyses

Applied and Environmental Microbiology
2014 | Journal article
DOI: 10.1128/AEM.01259-14
ARXIV:

http://aem.asm.org/content/early/2014/05/12/AEM.01259-14.full.pdf+html
Source: Self-asserted source
ZHE LYU
grade
Preferred source (of 2)‎

Complete Genome Sequence of a Thermophilic Methanogen, Methanocella conradii HZ254, Isolated from Chinese Rice Field Soil

2012 | Journal article
DOI:

10.1128/jb.00207-12

Part of ISSN:

0021-9193
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Methanocella conradii sp. nov., a Thermophilic, Obligate Hydrogenotrophic Methanogen, Isolated from Chinese Rice Field Soil

2012 | Journal article
DOI:

10.1371/journal.pone.0035279

Part of ISSN:

1932-6203
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Dynamics of the Methanogenic Archaeal Community during Plant Residue Decomposition in an Anoxic Rice Field Soil

2008 | Journal article
DOI:

10.1128/aem.00070-08

Part of ISSN:

0099-2240
Source: Self-asserted source
ZHE LYU via Crossref Metadata Search

Peer review (69 reviews for 28 publications/grants)

Review activity for ACS synthetic biology. (2)
Review activity for Applied and environmental microbiology. (8)
Review activity for Applied microbiology and biotechnology. (1)
Review activity for Archaea. (3)
Review activity for BMC genomics (2)
Review activity for Communications biology. (1)
Review activity for Critical reviews in biotechnology. (1)
Review activity for Current research in biotechnology. (3)
Review activity for Digestive diseases and sciences. (1)
Review activity for Digestive diseases and sciences. (1)
Review activity for Environmental microbiology reports. (1)
Review activity for Environmental science & technology. (1)
Review activity for FEBS letters. (1)
Review activity for FEMS microbes. (1)
Review activity for FEMS microbiology letters. (2)
Review activity for Frontiers in microbiology. (1)
Review activity for Genome biology and evolution. (1)
Review activity for Microbial ecology. (1)
Review activity for Microbial ecology. (1)
Review activity for Microbiology spectrum. (22)
Review activity for Microbiology. (2)
Review activity for MicrobiologyOpen. (1)
Review activity for Microorganisms. (2)
Review activity for MSystems. (2)
Review activity for PLOS genetics (1)
Review activity for PloS one. (4)
Review activity for Sustainability. (1)
Review activity for The ISME journal (1)
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