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Scopus Author ID: 23479818400

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Works (32)

PyFREC 2.0: Software for excitation energy transfer modeling

Journal of Computational Chemistry
2022 | Journal article
DOI: 10.1002/jcc.26930
EID:

2-s2.0-85130621021

Part of ISSN: 1096987X 01928651
Contributors: Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Computer Vision in Chemistry: Automatic Titration

Journal of Chemical Education
2021 | Journal article
DOI: 10.1021/acs.jchemed.1c00810
EID:

2-s2.0-85119074276

Part of ISSN: 19381328 00219584
Contributors: Kosenkov, Y.; Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Software for the frontiers of quantum chemistry: An overview of developments in the Q-Chem 5 package

Journal of Chemical Physics
2021 | Journal article
DOI: 10.1063/5.0055522
EID:

2-s2.0-85111906352

Part of ISSN: 10897690 00219606
Contributors: Epifanovsky, E.; Gilbert, A.T.B.; Feng, X.; Lee, J.; Mao, Y.; Mardirossian, N.; Pokhilko, P.; White, A.F.; Coons, M.P.; Dempwolff, A.L. et al.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Intermolecular interactions of liquefied petroleum gas—alcohol mixtures with phyllosilicates

Structural Chemistry
2020 | Journal article
DOI: 10.1007/s11224-020-01523-x
EID:

2-s2.0-85083093271

Part of ISSN: 15729001 10400400
Contributors: Prascsak, A.; Timpani, S.; Melfi, T.; Kosenkov, Y.K.; Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Conditional Singlet Oxygen Generation through a Bioorthogonal DNA-targeted Tetrazine Reaction

Angewandte Chemie - International Edition
2019 | Journal article
DOI: 10.1002/anie.201907093
EID:

2-s2.0-85070673831

Part of ISSN: 15213773 14337851
Contributors: Linden, G.; Zhang, L.; Pieck, F.; Linne, U.; Kosenkov, D.; Tonner, R.; Vázquez, O.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Discovery-Based Computational Activities in the Undergraduate Chemistry Curriculum

ACS Symposium Series
2019 | Book chapter
DOI: 10.1021/bk-2019-1312.ch016
EID:

2-s2.0-85065241829

Part of ISSN: 19475918 00976156
Contributors: Kholod, Y.; Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Quantum dynamics of vibration-assisted excitation energy transfer in phycobiliprotein light-harvesting complex

Journal of Chemical Physics
2019 | Journal article
DOI: 10.1063/1.5116555
EID:

2-s2.0-85073264822

Part of ISSN: 00219606
Contributors: Kosenkov, Y.K.; Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Computer-Aided Drug Discovery: Molecular Docking of Diminazene Ligands to DNA Minor Groove

Journal of Chemical Education
2018 | Journal article
DOI: 10.1021/acs.jchemed.7b00989
EID:

2-s2.0-85046861535

Part of ISSN: 19381328 00219584
Contributors: Kholod, Y.; Hoag, E.; Muratore, K.; Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Excitation Energy Transfer Pathways in Light-Harvesting Proteins: Modeling with PyFREC

Journal of Computational Chemistry
2018 | Journal article
DOI: 10.1002/JCC.25134
EID:

2-s2.0-85051826897

Part of ISSN: 1096987X 01928651
Contributors: Kholod, Y.; Defilippo, M.; Reed, B.; Valdez, D.; Gillan, G.; Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Extension of the Effective Fragment Potential Method to Macromolecules

Journal of Physical Chemistry B
2016 | Journal article
DOI: 10.1021/acs.jpcb.6b04166
EID:

2-s2.0-84978736610

Part of ISSN: 15205207 15206106
Contributors: Gurunathan, P.K.; Acharya, A.; Ghosh, D.; Kosenkov, D.; Kaliman, I.; Shao, Y.; Krylov, A.I.; Slipchenko, L.V.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Integrating Chemistry Laboratory Instrumentation into the Industrial Internet: Building, Programming, and Experimenting with an Automatic Titrator

Journal of Chemical Education
2016 | Journal article
DOI: 10.1021/acs.jchemed.5b00494
EID:

2-s2.0-84954322415

Part of ISSN: 19381328 00219584
Contributors: Famularo, N.; Kholod, Y.; Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

PyFREC: Software for Förster electronic coupling evaluation in molecular fragments

Journal of Computational Chemistry
2016 | Journal article
DOI: 10.1002/jcc.24401
EID:

2-s2.0-84975230584

Part of ISSN: 1096987X 01928651
Contributors: Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Transient-absorption spectroscopy of cis-trans isomerization of N,N-dimethyl-4,4′-azodianiline with 3D-printed temperature-controlled sample holder

Journal of Chemical Education
2016 | Journal article
DOI: 10.1021/acs.jchemed.6b00121
EID:

2-s2.0-84978786195

Part of ISSN: 19381328 00219584
Contributors: Kosenkov, D.; Shaw, J.; Zuczek, J.; Kholod, Y.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Advances in molecular quantum chemistry contained in the Q-Chem 4 program package

Molecular Physics
2015 | Journal article
DOI: 10.1080/00268976.2014.952696
EID:

2-s2.0-84919482525

Part of ISSN: 13623028 00268976
Contributors: Shao, Y.; Gan, Z.; Epifanovsky, E.; Gilbert, A.T.B.; Wormit, M.; Kussmann, J.; Lange, A.W.; Behn, A.; Deng, J.; Feng, X. et al.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Thermodynamics of binding of Di- and tetrasubstituted naphthalene diimide ligands to DNA G-quadruplex

Journal of Physical Chemistry B
2015 | Journal article
DOI: 10.1021/jp509637y
EID:

2-s2.0-84923863074

Part of ISSN: 15205207 15206106
Contributors: Prato, G.; Silvent, S.; Saka, S.; Lamberto, M.; Kosenkov, D.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Erratum: Accurate prediction of noncovalent interaction energies with the effective fragment potential method: Comparison of energy components to symmetry-adapted perturbation theory for the S22 test set (Journal of Chemical Theory and Computation (2014) 10:10 (4759-4760) DOI:10.1021/ct200673a)

Journal of Chemical Theory and Computation
2014 | Journal article
DOI: 10.1021/ct500658b
EID:

2-s2.0-84907991975

Part of ISSN: 15499626 15499618
Contributors: Flick, J.C.; Kosenkov, D.; Hohenstein, E.G.; Sherrill, C.D.; Slipchenko, L.V.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Effective fragment potential method in Q-CHEM: A guide for users and developers

Journal of Computational Chemistry
2013 | Journal article
DOI: 10.1002/jcc.23223
EID:

2-s2.0-84875891168

Part of ISSN: 1096987X 01928651
Contributors: Ghosh, D.; Kosenkov, D.; Vanovschi, V.; Flick, J.; Kaliman, I.; Shao, Y.; Gilbert, A.T.B.; Krylov, A.I.; Slipchenko, L.V.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Accurate prediction of noncovalent interaction energies with the effective fragment potential method: Comparison of energy components to symmetry-adapted perturbation theory for the S22 test set

Journal of Chemical Theory and Computation
2012 | Journal article
DOI: 10.1021/ct200673a
EID:

2-s2.0-84865074490

Part of ISSN: 15499626 15499618
Contributors: Flick, J.C.; Kosenkov, D.; Hohenstein, E.G.; Sherrill, C.D.; Slipchenko, L.V.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Conformationally locked chromophores as models of excited-state proton transfer in fluorescent proteins

Journal of the American Chemical Society
2012 | Journal article
DOI: 10.1021/ja3010144
EID:

2-s2.0-84859339110

Part of ISSN: 00027863 15205126
Contributors: Baranov, M.S.; Lukyanov, K.A.; Borissova, A.O.; Shamir, J.; Kosenkov, D.; Slipchenko, L.V.; Tolbert, L.M.; Yampolsky, I.V.; Solntsev, K.M.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Evolution of amide stacking in larger γ-peptides: Triamide H-bonded cycles

Journal of Physical Chemistry A
2011 | Journal article
DOI: 10.1021/jp205527e
EID:

2-s2.0-81855190701

Part of ISSN: 10895639 15205215
Contributors: Iii, W.H.J.; Buchanan, E.G.; Müller, C.W.; Dean, J.C.; Kosenkov, D.; Slipchenko, L.V.; Guo, L.; Reidenbach, A.G.; Gellman, S.H.; Zwier, T.S.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Solvent effects on the electronic transitions of p-nitroaniline: A QM/EFP study

Journal of Physical Chemistry A
2011 | Journal article
DOI: 10.1021/jp110026c
EID:

2-s2.0-79851480219

Part of ISSN: 10895639 15205215
Contributors: Kosenkov, D.; Slipchenko, L.V.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Viability of pyrite pulled metabolism in the 'iron-sulfur world' theory: Quantum chemical assessment

Geochimica et Cosmochimica Acta
2011 | Journal article
DOI: 10.1016/j.gca.2011.01.015
EID:

2-s2.0-79952454420

Part of ISSN: 00167037
Contributors: Michalkova, A.; Kholod, Y.; Kosenkov, D.; Gorb, L.; Leszczynski, J.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Ethanolysis of N-substituted norbornane epoxyimides: Discovery of diverse pathways depending on substituent's character

Organic and Biomolecular Chemistry
2010 | Journal article
DOI: 10.1039/b917850c
EID:

2-s2.0-77951107848

Part of ISSN: 14770520
Contributors: Petrova, T.; Tarabara, I.; Palchikov, V.; Kasyan, L.; Kosenkov, D.; Okovytyy, S.; Gorb, L.; Shishkina, S.; Shishkin, O.; Leszczynski, J.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Evaluation of Proton Transfer in DNA Constituents: Development and Application of Ab Initio Based Reaction Kinetics

Challenges and Advances in Computational Chemistry and Physics
2010 | Book chapter
DOI: 10.1007/978-90-481-3034-4_7
EID:

2-s2.0-85073243099

Part of ISSN: 25424483 25424491
Contributors: Kosenkov, D.; Kholod, Y.; Gorb, L.; Leszczynski, J.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Noncovalent interactions in extended systems described by the effective fragment potential method: Theory and application to nucleobase oligomers

Journal of Physical Chemistry A
2010 | Journal article
DOI: 10.1021/jp107557p
EID:

2-s2.0-78649830841

Part of ISSN: 10895639 15205215
Contributors: Ghosh, D.; Kosenkov, D.; Vanovschi, V.; Williams, C.F.; Herbert, J.M.; Gordon, M.S.; Schmidt, M.W.; Slipchenko, L.V.; Krylov, A.I.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Ab initio kinetic simulation of gas-phase experiments: Tautomerization of cytosine and guanine

Journal of Physical Chemistry B
2009 | Journal article
DOI: 10.1021/jp810570w
EID:

2-s2.0-66349114066

Part of ISSN: 15206106
Contributors: Kosenkov, D.; Kholod, Y.; Gorb, L.; Shishkin, O.; Hovorun, D.M.; Mons, M.; Leszczynski, J.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Effect of a pH change on the conformational stability of the modified nucleotide queuosine monophosphate

Journal of Physical Chemistry A
2009 | Journal article
DOI: 10.1021/jp903993s
EID:

2-s2.0-70349199473

Part of ISSN: 10895639
Contributors: Kosenkov, D.; Kholod, Y.A.; Gorb, L.; Shishkin, O.V.; Kuramshina, G.M.; Dovbeshko, G.I.; Leszczynski, J.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

CL-20 photodecomposition: Ab initio foundations for identification of products

Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy
2008 | Journal article
DOI: 10.1016/j.saa.2007.12.021
EID:

2-s2.0-84962408515

Part of ISSN: 13861425
Contributors: Kholod, Y.; Kosenkov, D.; Okovytyy, S.; Gorb, L.; Qasim, M.; Leszczynski, J.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Tautomeric equilibrium, stability, and hydrogen bonding in 2′-deoxyguanosine monophosphate complexed with Mg<sup>2+</sup>

Journal of Physical Chemistry B
2008 | Journal article
DOI: 10.1021/jp075888t
EID:

2-s2.0-38649093292

Part of ISSN: 15206106
Contributors: Kosenkov, D.; Gorb, L.; Shishkin, O.V.; Šponer, J.; Leszczynski, J.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Thermodynamics and kinetics of intramolecular water assisted proton transfer in Na<sup>+</sup>-1-methylcytosine water complexes

Journal of Physical Chemistry B
2008 | Journal article
DOI: 10.1021/jp801807x
EID:

2-s2.0-49149130269

Part of ISSN: 15206106
Contributors: Michalkova, A.; Kosenkov, D.; Gorb, L.; Leszczynski, J.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Structural organisation of nucleic acids from tumour cells

Faraday Discussions
2004 | Journal article
DOI: 10.1039/b304904c
EID:

2-s2.0-1642277822

Part of ISSN: 13645498 13596640
Contributors: Repnytska, O.P.; Dovbeshko, G.I.; Tryndiak, V.P.; Todor, I.M.; Kosenkov, D.V.
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Vibrational spectroscopy and principal component analysis for conformational study of virus nucleic acids

Proceedings of SPIE - The International Society for Optical Engineering
2004 | Conference paper
DOI: 10.1117/12.570000
EID:

2-s2.0-8844243329

Part of ISSN: 0277786X
Contributors: Dovbeshko, G.; Repnytska, T.; Pererva, A.; Miruta, D.; Kosenkov
Source: Self-asserted source
Dmitri Kosenkov via Scopus - Elsevier

Peer review (20 reviews for 6 publications/grants)

Review activity for Journal of chemical education. (12)
Review activity for Journal of chemical theory and computation : (1)
Review activity for Structural chemistry. (3)
Review activity for The journal of physical chemistry letters. (1)
Review activity for The journal of physical chemistry. (1)
Review activity for The journal of physical chemistry. (2)
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