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University of Melbourne

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Australia

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Employment (2)

The University of Melbourne: Melbourne, VIC, AU

2020-12 to present
Employment
Source: Self-asserted source
Danielle Ingle

Australian National University: Canberra, ACT, AU

2016-12 to 2020-11
Employment
Source: Self-asserted source
Danielle Ingle

Education and qualifications (2)

The University of Melbourne: Melbourne, AU

Doctor of Philosophy
Education
Source: Self-asserted source
Danielle Ingle

The Australian National University: Canberra, AU

B Arts/ B Science (Honours First Class)
Education
Source: Self-asserted source
Danielle Ingle

Professional activities (3)

Microbiology Society: London, GB

2022 to 2025 | Editor at Microbial Genomics
Service
Source: Self-asserted source
Danielle Ingle

Australian National University: ACT, ACT, AU

2020-12-01 to 2022-12-01 | Honorary
Invited position
Source: Self-asserted source
Danielle Ingle

The University of Melbourne: Melbourne, AU

2019-06 to 2020-11 | Honorary appointment (Dept. of Microbiology and Immunology)
Invited position
Source: Self-asserted source
Danielle Ingle

Funding (3)

Genomic Insights Into the Seventh Pandemic Cholera Agent in Australia and the Western Pacific

2023 to 2024 | Grant
University of Melbourne (Melbourne, AU)
Source: Self-asserted source
Danielle Ingle

Enhancing Control of Enteric Bacteria Through Pathogen Genomics

2021 to 2025 | Grant
National Health and Medical Research Council (Canberra, Australian Capital Territory, AU)
GRANT_NUMBER:

1195210
Source: Self-asserted source
Danielle Ingle

An Evidence Based Framework for Establishing Public Health Microbial Genomics in Australia

2018 to 2024 | Grant
National Health and Medical Research Council (Canberra, Australian Capital Territory, AU)
GRANT_NUMBER:

1149991
Source: Self-asserted source
Danielle Ingle

Works (37)

Genomic epidemiology and phenotypic characterisation of Salmonella enterica serovar Panama in Victoria, Australia

PLOS Neglected Tropical Diseases
2024-11-20 | Journal article | Author
DOI: 10.1371/journal.pntd.0012666
Part of ISSN: 1935-2735
Contributors: Samriddhi Thakur; Sarah L. Baines; Cheryll M. Sia; Mary Valcanis; Louise M. Judd; Benjamin P. Howden; Hayley Newton; Danielle Ingle
Source: Self-asserted source
Danielle Ingle

Rifaximin prophylaxis causes resistance to the last-resort antibiotic daptomycin

Nature
2024-10-23 | Journal article | Author
DOI: 10.1038/s41586-024-08095-4
Part of ISSN: 0028-0836
Part of ISSN: 1476-4687
Contributors: Adrianna Turner; Lucy Li; Ian Monk; Jean YH Lee; Danielle Ingle; Stephanie Portelli; Norelle L. Sherry; Nicole Isles; Torsten Seemann; Liam Sharkey et al.
Source: Self-asserted source
Danielle Ingle

Surveillance of travel-associated isolates elucidates the diversity of non-pandemic Vibrio cholerae

Microbial Genomics
2024-10-16 | Journal article | Author
DOI: 10.1099/mgen.0.001307
Part of ISSN: 2057-5858
Contributors: Lia Bote; Alyce Taylor-Brown; Mailis Maes; Danielle Ingle; Mary Valcanis; Benjamin Howden; Nicholas Thomson
Source: Self-asserted source
Danielle Ingle

Longitudinal genomic analysis of Neisseria gonorrhoeae transmission dynamics in Australia

Nature Communications
2024-09-14 | Journal article | Author
DOI: 10.1038/s41467-024-52343-0
Part of ISSN: 2041-1723
Contributors: Mona Taouk; George Taiaroa; Sebastian Duchene; Soo Jen Low; Charlie K. Higgs; Darren Y. J. Lee; Shivani Pasricha; Nasra Higgins; Danielle Ingle; Benjamin Howden et al.
Source: Self-asserted source
Danielle Ingle

Intratumoral presence of the genotoxic gut bacteria pks+ E. coli, Enterotoxigenic Bacteroides fragilis, and Fusobacterium nucleatum and their association with clinicopathological and molecular features of colorectal cancer

British Journal of Cancer
2024-03-23 | Journal article
DOI: 10.1038/s41416-023-02554-x
Part of ISSN: 0007-0920
Part of ISSN: 1532-1827
Contributors: Jihoon E. Joo; Yen Lin Chu; Peter Georgeson; Romy Walker; Khalid Mahmood; Mark Clendenning; Aaron L. Meyers; Julia Como; Sharelle Joseland; Susan G. Preston et al.
Source: Self-asserted source
Danielle Ingle

Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes

eLife
2023-09-12 | Journal article
DOI: 10.7554/elife.85867
Part of ISSN: 2050-084X
Contributors: Megan Carey; Zoe Anne Dyson; Danielle J Ingle; Afreenish Amir; Mabel K Aworh; Marie Anne Chattaway; Ka Lip Chew; John A. Crump; Nicholas A Feasey; Benjamin Howden et al.
Source: Self-asserted source
Danielle Ingle

The evolution and international spread of extensively drug resistant Shigella sonnei

Nature Communications
2023-04-08 | Journal article | Author
DOI: 10.1038/s41467-023-37672-w
Part of ISSN: 2041-1723
Contributors: Lewis C E Mason; David R. Greig; Lauren A. Cowley; Sally Partridge; Elena Martinez; Grace A. Blackwell; Charlotte E. Chong; P. Malaka De Silva; Rebecca J. Bengtsson; Jenny Draper et al.
Source: Self-asserted source
Danielle Ingle

The changing epidemiology of shigellosis in Australia, 2001–2019

PLOS Neglected Tropical Diseases
2023-03-01 | Journal article
DOI: 10.1371/journal.pntd.0010450
Part of ISSN: 1935-2735
Contributors: Aaliya Ibrahim; Kathryn Glass; Deborah A. Williamson; Benjamin G. Polkinghorne; Danielle J. Ingle; Rose Wright; Martyn D. Kirk
Source: Self-asserted source
Danielle Ingle

Genomic Diversity of Campylobacter lari Group Isolates from Europe and Australia in a One Health Context

Applied and Environmental Microbiology
2022-12-13 | Journal article
DOI: 10.1128/aem.01368-22
Part of ISSN: 0099-2240
Part of ISSN: 1098-5336
Contributors: Michele Gourmelon; Amine Mohamed Boukerb; Nesrine Nabi; Sangeeta Banerji; Katrine G. Joensen; Joelle Serghine; Alexandre Cormier; Francis Megraud; Philippe Lehours; Thomas Alter et al.
Source: Self-asserted source
Danielle Ingle

Persistence of Rare Salmonella Typhi Genotypes Susceptible to First-Line Antibiotics in the Remote Islands of Samoa

mBio
2022-10-26 | Journal article | Author
DOI: 10.1128/mbio.01920-22
Part of ISSN: 2150-7511
Contributors: Michael J. Sikorski; Tracy H. Hazen; Sachin N. Desai; Susana Nimarota-Brown; Siaosi Tupua; Michelle Sialeipata; Savitra Rambocus; Danielle Ingle; Sebastian Duchene; Susan A. Ballard et al.
Source: Self-asserted source
Danielle Ingle

Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak in Australia: a genomic epidemiological analysis

The Lancet Microbe
2022-04 | Journal article
DOI: 10.1016/s2666-5247(22)00035-0
Part of ISSN: 2666-5247
Source: Self-asserted source
Danielle Ingle
grade
Preferred source (of 2)‎

Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established population of genotype 2.1.7 sensitive to antimicrobials

PLOS Neglected Tropical Diseases
2022-03-28 | Journal article
DOI: 10.1371/journal.pntd.0010306
Part of ISSN: 1935-2735
Source: Self-asserted source
Danielle Ingle
grade
Preferred source (of 2)‎

Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia

Nature Communications
2021-12 | Journal article
DOI: 10.1038/s41467-021-25073-w
Part of ISSN: 2041-1723
Source: Self-asserted source
Danielle Ingle

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

Nature Communications
2021-12 | Journal article
DOI: 10.1038/s41467-021-22700-4
Part of ISSN: 2041-1723
Source: Self-asserted source
Danielle Ingle

Genomic diversity of antimicrobial resistance in non-typhoidal Salmonella in Victoria, Australia

Microbial Genomics
2021-12-15 | Journal article
DOI: 10.1099/mgen.0.000725
Part of ISSN: 2057-5858
Source: Self-asserted source
Danielle Ingle

Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis

The Lancet Microbe
2021-11 | Journal article
DOI: 10.1016/s2666-5247(21)00149-x
Part of ISSN: 2666-5247
Source: Self-asserted source
Danielle Ingle

Genomic Epidemiology and Antimicrobial Resistance Mechanisms of Imported Typhoid in Australia

Antimicrobial Agents and Chemotherapy
2021-11-17 | Journal article
DOI: 10.1128/aac.01200-21
Part of ISSN: 0066-4804
Part of ISSN: 1098-6596
Source: Self-asserted source
Danielle Ingle

Campylobacter jejuni ST50, a pathogen of global importance: A comparative genomic analysis of isolates from Australia, Europe and North America

Zoonoses and Public Health
2021-05-27 | Journal article
DOI: 10.1111/zph.12853
Part of ISSN: 1863-1959
Part of ISSN: 1863-2378
Source: Self-asserted source
Danielle Ingle

Development of Phylodynamic Methods for Bacterial Pathogens

Trends in Microbiology
2021-03 | Journal article
DOI: 10.1016/j.tim.2021.02.008
Part of ISSN: 0966-842X
Source: Self-asserted source
Danielle Ingle

Re-evaluation of a Neonatal Mouse Model of Infection With Enterotoxigenic Escherichia coli

Frontiers in Microbiology
2021-03-18 | Journal article
DOI: 10.3389/fmicb.2021.651488
Part of ISSN: 1664-302X
Source: Self-asserted source
Danielle Ingle

GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure

BMC Genomics
2020-12 | Journal article
DOI: 10.1186/s12864-020-07019-6
Part of ISSN: 1471-2164
Source: Self-asserted source
Danielle Ingle

Prolonged outbreak of multidrug-resistant Shigella sonnei harbouring blaCTX-M-27 in Victoria, Australia

Antimicrobial Agents and Chemotherapy
2020-10-05 | Journal article
DOI: 10.1128/aac.01518-20
Part of ISSN: 0066-4804
Part of ISSN: 1098-6596
Source: Self-asserted source
Danielle Ingle

Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era

Nature Communications
2019-12 | Journal article
DOI: 10.1038/s41467-019-12053-4
Source: Self-asserted source
Danielle Ingle

Genomic Analysis of Fluoroquinolone- and Tetracycline-Resistant Campylobacter jejuni Sequence Type 6964 in Humans and Poultry, New Zealand, 2014–2016

Emerging Infectious Diseases
2019-12 | Journal article
DOI: 10.3201/eid2512.190267
Part of ISSN: 1080-6040
Part of ISSN: 1080-6059
Source: Self-asserted source
Danielle Ingle

Extensively Drug-Resistant Shigellosis in Australia among Men Who Have Sex with Men

New England Journal of Medicine
2019-12-19 | Journal article
DOI: 10.1056/nejmc1910648
Part of ISSN: 0028-4793
Part of ISSN: 1533-4406
Source: Self-asserted source
Danielle Ingle

Whole-Genome Sequencing of Salmonella Mississippi and Typhimurium Definitive Type 160, Australia and New Zealand

Emerging Infectious Diseases
2019-09 | Journal article
DOI: 10.3201/eid2509.181811
Source: Self-asserted source
Danielle Ingle

Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers

PLOS Neglected Tropical Diseases
2019-09-12 | Journal article
DOI: 10.1371/journal.pntd.0007620
Source: Self-asserted source
Danielle Ingle

Risk factors for asymptomatic enteric pathogen detection among men who have sex with men

Open Forum Infectious Diseases
2019-07-11 | Journal article
DOI: 10.1093/ofid/ofz326
Source: Self-asserted source
Danielle Ingle

Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia

Microbial Genomics
2019-05-01 | Journal article
DOI: 10.1099/mgen.0.000268
Source: Self-asserted source
Danielle Ingle

Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia

Clinical Infectious Diseases
2019-01-07 | Journal article
DOI: 10.1093/cid/ciz005
Source: Self-asserted source
Danielle Ingle

Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa

Nature Microbiology
2018-09 | Journal article
DOI: 10.1038/s41564-018-0217-4
Source: Self-asserted source
Danielle Ingle

EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation

Nature Microbiology
2017-04 | Journal article
DOI: 10.1038/nmicrobiol.2016.258
Source: Self-asserted source
Danielle Ingle

Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing?

Frontiers in Cellular and Infection Microbiology
2016-11-18 | Journal article
DOI: 10.3389/fcimb.2016.00141
Source: Self-asserted source
Danielle Ingle

In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages

Microbial Genomics
2016-07-11 | Journal article
DOI: 10.1099/mgen.0.000064
Source: Self-asserted source
Danielle Ingle

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward

Microbial Genomics
2016-03-02 | Journal article
DOI: 10.1099/mgen.0.000050
Source: Self-asserted source
Danielle Ingle

Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants

Nature Microbiology
2016-02 | Journal article
DOI: 10.1038/nmicrobiol.2015.10
Source: Self-asserted source
Danielle Ingle

Biofilm Formation by and Thermal Niche and Virulence Characteristics of Escherichia spp.

Applied and Environmental Microbiology
2011-04-15 | Journal article
DOI: 10.1128/aem.02401-10
Source: Self-asserted source
Danielle Ingle
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