Personal information

Bioinformatics, Computational Biology, AI/ML, Immunomics, Quantitative Pharmacology
Germany

Biography

Sr. Principal Data Scientist - Virtual Patient Innovation @ Sanofi

Activities

Employment (3)

Sanofi (Germany): Frankfurt am Main, DE

2023-11-01 to present | Senior Principal Data Scientist - Virtual Patient Innovation (Data & Data Science)
Employment
Source: Self-asserted source
Tommaso Andreani

Sanofi (Germany): Frankfurt am Main, DE

2021-02-01 to 2023-10-31 | Principal Data Scientist - Bioinformatics (Data & Data Science)
Employment
Source: Self-asserted source
Tommaso Andreani

Sanofi (Germany): Frankfurt am Main, DE

2020-02-01 to 2021-02-28 | Post doc fellow - Computational Biology & Bioinformatics (AI & Deep Analytics)
Employment
Source: Self-asserted source
Tommaso Andreani

Works (13)

Expression and subcellular localization of<i>USH1C</i>/harmonin in human retina provides insights into pathomechanisms and therapy

Human Molecular Genetics
2023-01-13 | Journal article
Part of ISSN: 0964-6906
Part of ISSN: 1460-2083
Contributors: Kerstin Nagel-Wolfrum; Benjamin R Fadl; Mirjana M Becker; Kirsten A Wunderlich; Jessica Schäfer; Daniel Sturm; Jacques Fritze; Burcu Gür; Lew Kaplan; Tommaso Andreani et al.
Source: Self-asserted source
Tommaso Andreani

DiSiR: fast and robust method to identify ligand–receptor interactions at subunit level from single-cell RNA-sequencing data

NAR Genomics and Bioinformatics
2023-01-10 | Journal article
Part of ISSN: 2631-9268
Contributors: Milad Rafiee Vahid; Andre H Kurlovs; Tommaso Andreani; Franck Augé; Reza Olfati-Saber; Emanuele de Rinaldis; Franck Rapaport; Virginia Savova
Source: Self-asserted source
Tommaso Andreani

Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data

NAR Genomics and Bioinformatics
2022-07-09 | Journal article
Contributors: Tommaso Andreani; Linda M Slot; Samuel Gabillard; Carsten Strübing; Claus Reimertz; Veeranagouda Yaligara; Aleida M Bakker; Reza Olfati-Saber; René E M Toes; Hans U Scherer et al.
Source: check_circle
Crossref

Single-cell specific and interpretable machine learning models for sparse scChIP-seq data imputation

PLOS ONE
2022-07-01 | Journal article
Part of ISSN: 1932-6203
Contributors: Steffen Albrecht; Tommaso Andreani; Miguel A. Andrade-Navarro; Jean Fontaine
Source: Self-asserted source
Tommaso Andreani

From DNA sequences to cell types by detecting regulatory genomic regions in sequencing data

2021-03-29 | Dissertation or Thesis
Source: Self-asserted source
Tommaso Andreani

Cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel

Genome Biology
2020 | Journal article
EID:

2-s2.0-85078020876

Part of ISBN:

1474760X 14747596

Contributors: Frochaux, M.V.; Bou Sleiman, M.; Gardeux, V.; Dainese, R.; Hollis, B.; Litovchenko, M.; Braman, V.S.; Andreani, T.; Osman, D.; Deplancke, B.
Source: Self-asserted source
Tommaso Andreani via Scopus - Elsevier

Computational identification of cell-specific variable regions in ChIP-seq data

Nucleic acids research
2020 | Journal article
EID:

2-s2.0-85084936953

Part of ISBN:

13624962

Contributors: Andreani, T.; Albrecht, S.; Fontaine, J.-F.; Andrade-Navarro, M.A.
Source: Self-asserted source
Tommaso Andreani via Scopus - Elsevier

Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes

Genome Biology
2020 | Journal article
EID:

2-s2.0-85077986290

Part of ISBN:

1474760X 14747596

Contributors: Bou Sleiman, M.; Frochaux, M.V.; Andreani, T.; Osman, D.; Guigo, R.; Deplancke, B.
Source: Self-asserted source
Tommaso Andreani via Scopus - Elsevier

RNA Sequencing of Human Peripheral Blood Cells Indicates Upregulation of Immune-Related Genes in Huntington's Disease

Frontiers in Neurology
2020-11-27 | Journal article
Part of ISSN: 1664-2295
Source: Self-asserted source
Tommaso Andreani

Assessment of computational methods for the analysis of single-cell ATAC-seq data

Genome Biology
2019 | Journal article
EID:

2-s2.0-85075114459

Part of ISBN:

1474760X 14747596

Contributors: Chen, H.; Lareau, C.; Andreani, T.; Vinyard, M.E.; Garcia, S.P.; Clement, K.; Andrade-Navarro, M.A.; Buenrostro, J.D.; Pinello, L.
Source: Self-asserted source
Tommaso Andreani via Scopus - Elsevier

GADD45 promotes locus-specific DNA demethylation and 2C cycling in embryonic stem cells

Genes and Development
2019 | Journal article
EID:

2-s2.0-85069264853

Part of ISBN:

15495477 08909369

Contributors: Schüle, K.M.; Leichsenring, M.; Andreani, T.; Vastolo, V.; Mallick, M.; Musheev, M.U.; Karaulanov, E.; Niehrs, C.
Source: Self-asserted source
Tommaso Andreani via Scopus - Elsevier

Interpretable machine learning models for single-cell ChIP-seq imputation

2019-12-20 | Preprint
Contributors: Steffen Albrecht; Tommaso Andreani; Miguel A. Andrade-Navarro; Jean-Fred Fontaine
Source: check_circle
Crossref

Carletti, M. (ed.) 2018. Series in Applied Sciences: Volume 1. Mathematical Modelling, Numerical and Data Analysis. Mantova: Universitas Studiorum. 176 pp. ISBN 9788833690445

Open Science Framework
2018 | Journal article
Source: Self-asserted source
Tommaso Andreani