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Employment (2)

Shenzhen University: Shenzhen, Guangdong, CN

2023-09-01 to present | Professor (Institute for Advanced Study)
Employment
Source: Self-asserted source
Rui Zhang

Xiamen University: Xiamen, Fujian, CN

2009-01 to 2023-08-31
Employment
Source: Self-asserted source
Rui Zhang

Education and qualifications (1)

Hong Kong University of Science and Technology: Hong Kong, CN

2003-09 to 2007-08 | PhD (Department of Biology)
Education
Source: Self-asserted source
Rui Zhang

Works (32)

Combined metabolomic and genomic analyses reveal phage-specific and infection stage-specific alterations to marine Roseobacter metabolism

2025-03-17 | Other
DOI: 10.1093/ismeco/ycaf047
Contributors: Rui Zhang; Min Jin; Lanlan Cai; Longfei Lu; Meishu Yu
Source: check_circle
Crossref

Two Novel Erythrobacter Phages Represent a New Genus of Eausmariqdvirus

2025-02-20 | Preprint
DOI: 10.20944/preprints202502.1685.v1
Contributors: Longfei Lu; Yunlan Yang; Shuzhen Wei; Nianzhi Jiao; Rui Zhang; Xuejing Li
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

A novel Alteromonas phage with tail fiber containing six potential iron-binding domains

Microbiology Spectrum
2025-01-07 | Journal article
DOI: 10.1128/spectrum.00934-24
Contributors: Chen Yu; Meishun Yu; Ruijie Ma; Shuzhen Wei; Min Jin; Nianzhi Jiao; Qiang Zheng; Rui Zhang; Xuejin Feng; Victor Gonzalez
Source: check_circle
Crossref

Diversity and ecological roles of RNA viral communities in the cryosphere of the Tibetan Plateau

2024-08-31 | Preprint
DOI: 10.1101/2024.08.30.610425
Contributors: Yongqin Liu; Zhihao Zhang; Nianzhi Jiao; Yongguan Zhu; Rui Zhang; Guillermo Dominguez-Huerta; Haina Wang; Meilin Feng; Rong Wen; Mukan Ji et al.
Source: check_circle
Crossref

Isolation and Characterization of a Novel Phage against Vibrio alginolyticus Belonging to a New Genus

International Journal of Molecular Sciences
2024-08-22 | Journal article
DOI: 10.3390/ijms25169132
Contributors: Jie Gao; Yuang Zhu; Rui Zhang; Juntian Xu; Runjie Zhou; Meiqi Di; Di Zhang; Wenxin Liang; Xing Zhou; Xing Ren et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

The structure and assembly mechanisms of T4-like cyanophages community in the South China Sea

Microbiology Spectrum
2024-02-06 | Journal article
DOI: 10.1128/spectrum.02002-23
Contributors: Huifang Li; Lanlan Cai; Long Wang; Yu Wang; Juntian Xu; Rui Zhang; Allison Veach
Source: check_circle
Crossref

Fjords Are Potential Hotspots of Refractory Dissolved Organic Matter Production: Insights From 1 Year of Weekly Time‐Series Observations of Fluorescent Dissolved Organic Matter in the Bedford Basin, a Northwestern Atlantic Fjord

Journal of Geophysical Research: Oceans
2023-12 | Journal article
DOI: 10.1029/2023JC019694
Contributors: Xilin Xiao; Qiang Shi; Leanne C. Powers; Douglas W. R. Wallace; Michael Gonsior; Xiao Chen; Jihua Liu; Chen Hu; Zongqing Lv; Rui Zhang et al.
Source: check_circle
Crossref

Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components

2023-12-18 | Other
DOI: 10.1093/ismeco/ycad011
Contributors: Meng Li; Changhai Duan; Yang Liu; Ying Liu; Lirui Liu; Mingwei Cai; Rui Zhang; Qinglu Zeng; Eugene V Koonin; Mart Krupovic
Source: check_circle
Crossref

Characterization of a Vibriophage Infecting Pathogenic Vibrio harveyi

International Journal of Molecular Sciences
2023-11-11 | Journal article
DOI: 10.3390/ijms242216202
Contributors: Yingying Li; Huayi Yun; Ruo Chen; Nianzhi Jiao; Qiang Zheng; Yunlan Yang; Rui Zhang
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components

2023-08-24 | Preprint
DOI: 10.1101/2023.08.24.554615
Contributors: Changhai Duan; Yang Liu; Ying Liu; Lirui Liu; Mingwei Cai; Rui Zhang; Qinglu Zeng; Eugene V. Koonin; Mart Krupovic; Meng Li
Source: check_circle
Crossref

Spatiotemporal Shift of T4-Like Phage Community Structure in the Three Largest Estuaries of China

Microbiology Spectrum
2023-04-13 | Journal article
DOI: 10.1128/spectrum.05203-22
Contributors: Lanlan Cai; Bu Xu; Huifang Li; Yongle Xu; Wei Wei; Rui Zhang; Jianjun Wang
Source: check_circle
Crossref

Abundant and cosmopolitan lineage of cyanopodoviruses lacking a DNA polymerase gene

The ISME Journal
2023-02 | Journal article
DOI: 10.1038/s41396-022-01340-6
Contributors: Lanlan Cai; Yue Chen; Shiwei Xiao; Riyue Liu; Maoqiu He; Rui Zhang; Qinglu Zeng
Source: check_circle
Crossref

Grinding Beads Influence Microbial DNA Extraction from Organic-Rich Sub-Seafloor Sediment

Microorganisms
2022-12-18 | Journal article
DOI: 10.3390/microorganisms10122505
Contributors: Jingjing Niu; Hong Chen; Lanlan Cai; Maoqiu He; Rui Zhang; Long Wang
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Potential metabolic and genetic interaction among viruses, methanogen and methanotrophic archaea, and their syntrophic partners

ISME Communications
2022-12-01 | Journal article
DOI: 10.1038/s43705-022-00135-2
Contributors: Long Wang; Yinzhao Wang; Xingyu Huang; Ruijie Ma; Jiangtao Li; Fengping Wang; Nianzhi Jiao; Rui Zhang
Source: check_circle
Crossref

Assessment of Explicit Representation of Dynamic Viral Processes in Regional Marine Ecological Models

Viruses
2022-06-30 | Journal article
DOI: 10.3390/v14071448
Contributors: Le Xie; Rui Zhang; Ya-Wei Luo
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Reduced bacterial mortality and enhanced viral productivity during sinking in the ocean

The ISME Journal
2022-06-01 | Journal article
DOI: 10.1038/s41396-022-01224-9
Contributors: Wei Wei; Xiaowei Chen; Markus G Weinbauer; Nianzhi Jiao; Rui Zhang
Source: check_circle
Crossref

Isolation and Characterization of a Novel Cyanophage Encoding Multiple Auxiliary Metabolic Genes

Viruses
2022-04-24 | Journal article
DOI: 10.3390/v14050887
Contributors: Cuhuang Rong; Kun Zhou; Shuiming Li; Kang Xiao; Ying Xu; Rui Zhang; Yunlan Yang; Yu Zhang
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

A Novel Phage Infecting the Marine Photoheterotrophic Bacterium Citromicrobium bathyomarinum

Viruses
2022-03-02 | Journal article
DOI: 10.3390/v14030512
Contributors: Ruijie Ma; Shuai Shao; Shuzhen Wei; Junlei Ye; Yahui Yang; Nianzhi Jiao; Rui Zhang
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

A holistic genome dataset of bacteria, archaea and viruses of the Pearl River estuary

Scientific Data
2022-02-14 | Journal article
DOI: 10.1038/s41597-022-01153-4
Contributors: Bu Xu; Fuyan Li; Lanlan Cai; Rui Zhang; Lu Fan; Chuanlun Zhang
Source: check_circle
Crossref

Unique phage–bacterium interplay in sponge holobionts from the southern Okinawa Trough hydrothermal vent

Environmental Microbiology Reports
2021-10 | Journal article
DOI: 10.1111/1758-2229.12979
Contributors: Kun Zhou; Pei‐Yuan Qian; Ting Zhang; Ying Xu; Rui Zhang
Source: check_circle
Crossref

The genomic content and context of auxiliary metabolic genes in roseophages

Environmental Microbiology
2021-07 | Journal article
DOI: 10.1111/1462-2920.15412
Contributors: Xingyu Huang; Nianzhi Jiao; Rui Zhang
Source: check_circle
Crossref

A Novel Broad Host Range Phage Infecting <i>Alteromonas</i>

Viruses
2021-05 | Journal article | Author
DOI: 10.3390/v13060987
Contributors: Xuejin Feng; Wei Yan; Anan Wang; Ruijie Ma; Xiaowei Chen; Ta-Hui Lin; Yi-Lung Chen; Shuzhen Wei; Tao Jin; Nianzhi Jiao et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute

Sedimentation of psbA Gene‐Containing Cyanophages, Cyanobacteria, and Eukaryotes in Marine and Estuarine Sediments

Journal of Geophysical Research: Biogeosciences
2021-04 | Journal article
DOI: 10.1029/2020JG006156
Contributors: Maoqiu He; Lanlan Cai; Jie Xu; Xiangfu Li; Zhen Shi; Nianzhi Jiao; Rui Zhang
Source: check_circle
Crossref

T4‐like myovirus community shaped by dispersal and deterministic processes in the South China Sea

Environmental Microbiology
2021-02 | Journal article
DOI: 10.1111/1462-2920.15290
Contributors: Huifang Li; Lu Liu; Yu Wang; Lanlan Cai; Maoqiu He; Long Wang; Chen Hu; Nianzhi Jiao; Rui Zhang
Source: check_circle
Crossref

Viral control of biomass and diversity of bacterioplankton in the deep sea

Communications Biology
2020-05-22 | Journal article
DOI: 10.1038/s42003-020-0974-5
Contributors: Rui Zhang; Yanxia Li; Wei Yan; Yu Wang; Lanlan Cai; Tingwei Luo; Huifang Li; Markus G. Weinbauer; Nianzhi Jiao
Source: check_circle
Crossref

Microbial transformation of virus-induced dissolved organic matter from picocyanobacteria: coupling of bacterial diversity and DOM chemodiversity

The ISME Journal
2019-10 | Journal article
DOI: 10.1038/s41396-019-0449-1
Contributors: Zhao Zhao; Michael Gonsior; Philippe Schmitt-Kopplin; Yuanchao Zhan; Rui Zhang; Nianzhi Jiao; Feng Chen
Source: check_circle
Crossref

Erratum: Yang, Y.; et al. A Novel Roseosiphophage Isolated from the Oligotrophic South China Sea. Viruses 2017, 9, 109

Viruses
2019-08-08 | Journal article
DOI: 10.3390/v11080734
Contributors: Yunlan Yang; Lanlan Cai; Ruijie Ma; Yongle Xu; Yigang Tong; Yong Huang; Nianzhi Jiao; Rui Zhang
Source: check_circle
Crossref

Active and diverse viruses persist in the deep sub-seafloor sediments over thousands of years

The ISME Journal
2019-07-01 | Journal article
DOI: 10.1038/s41396-019-0397-9
Contributors: Lanlan Cai; Bo B Jørgensen; Curtis A Suttle; Maoqiu He; Barry A Cragg; Nianzhi Jiao; Rui Zhang
Source: check_circle
Crossref

Ocean Acidification Regulates the Activity, Community Structure, and Functional Potential of Heterotrophic Bacterioplankton in an Oligotrophic Gyre

Journal of Geophysical Research: Biogeosciences
2019-04 | Journal article
DOI: 10.1029/2018JG004707
Contributors: Xiaomin Xia; Yu Wang; Yunlan Yang; Tingwei Luo; Joy D. Van Nostrand; Jizhong Zhou; Nianzhi Jiao; Rui Zhang
Source: check_circle
Crossref

Cyanophages exhibit rhythmic infection patterns under light-dark cycles

2017-07-24 | Preprint
DOI: 10.1101/167650
Contributors: Riyue Liu; Yue Chen; Rui Zhang; Yaxin Liu; Nianzhi Jiao; Qinglu Zeng
Source: check_circle
Crossref

A Novel Roseosiphophage Isolated from the Oligotrophic South China Sea

Viruses
2017-05 | Journal article
DOI: 10.3390/v9050109
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 2)‎

Metagenomic Analysis of Virioplankton of the Subtropical Jiulong River Estuary, China

Viruses
2016-02-02 | Journal article
DOI: 10.3390/v8020035
Contributors: Lanlan Cai; Rui Zhang; Ying He; Xiaoyuan Feng; Nianzhi Jiao
Source: check_circle
Crossref

Peer review (16 reviews for 10 publications/grants)

Review activity for Communications biology. (2)
Review activity for Diversity. (1)
Review activity for International journal of systematic and evolutionary microbiology. (1)
Review activity for ISME communications. (2)
Review activity for Marine pollution bulletin. (1)
Review activity for Molecular biology reports. (1)
Review activity for Regional studies in marine science. (2)
Review activity for Science of the total environment. (1)
Review activity for The ISME journal (3)
Review activity for Water research. (2)
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