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Employment (1)

University of Oxford University College Oxford: Oxford, Oxfordshire, GB

2018-11-26 to 2020-08-26 | Research Assistant (Nuffield Department of Experimental Medicine )
Employment
Source: Self-asserted source
James Kavanagh

Education and qualifications (3)

Imperial College London: London, Westminster, GB

2020-10-05 to present | PhD (Department of Infectious Disease)
Education
Source: Self-asserted source
James Kavanagh

Université Montpellier Faculté des Sciences de Montpellier: Montpellier, Occitanie, FR

2016-09-05 to 2018-07-26 | MSc Evolutionary Biology (ISEM )
Education
Source: Self-asserted source
James Kavanagh

University of Oxford University College Oxford: Oxford, Oxfordshire, GB

2013-10-07 to 2016-06-24 | BA Biological Sciences (Zoology)
Qualification
Source: Self-asserted source
James Kavanagh

Works (23)

Author Correction: The plasmidome associated with Gram-negative bloodstream infections: a large-scale observational study using complete plasmid assemblies

Nature Communications
2024-04-09 | Journal article
DOI: 10.1038/s41467-024-47494-z
Contributors: Samuel Lipworth; William Matlock; Liam Shaw; Karina-Doris Vihta; Gillian Rodger; Kevin Chau; Leanne Barker; Sophie George; James Kavanagh; Timothy Davies et al.
Source: check_circle
Crossref

The plasmidome associated with Gram-negative bloodstream infections: A large-scale observational study using complete plasmid assemblies

Nature Communications
2024-02-22 | Journal article
DOI: 10.1038/s41467-024-45761-7
Contributors: Samuel Lipworth; William Matlock; Liam Shaw; Karina-Doris Vihta; Gillian Rodger; Kevin Chau; Leanne Barker; Sophie George; James Kavanagh; Timothy Davies et al.
Source: check_circle
Crossref

Molecular epidemiology and antimicrobial resistance phenotype of paediatric bloodstream infections caused by Gram-negative bacteria

Communications Medicine
2022-08-11 | Journal article
DOI: 10.1038/s43856-022-00161-0
Contributors: Sam Lipworth; Karina-Doris Vihta; Tim Davies; Sarah Wright; Merline Tabirao; Kevin Chau; Alison Vaughan; James Kavanagh; Leanne Barker; Sophie George et al.
Source: check_circle
Crossref

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

Science Advances
2021-04-09 | Journal article
DOI: 10.1126/sciadv.abe3868
Contributors: Liam P. Shaw; Kevin K. Chau; James Kavanagh; Manal AbuOun; Emma Stubberfield; H. Soon Gweon; Leanne Barker; Gillian Rodger; Mike J. Bowes; Alasdair T. M. Hubbard et al.
Source: check_circle
Crossref

Microbiome and environment explain the absence of correlations between consumers and their diet in Bornean microsnails

Ecology
2021-02 | Journal article
DOI: 10.1002/ecy.3237
Contributors: Kasper P. Hendriks; Karen Bisschop; Hylke H. Kortenbosch; James C. Kavanagh; Anaïs E. A. Larue; Phung Chee‐Chean; Dries Bonte; Elza J. Duijm; Joana Falcão Salles; Alex L. Pigot et al.
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Crossref

Microbiome and Environment Explain the Absence of Correlations Between Consumers and Their Diet in Bornean Microsnails

The Bulletin of the Ecological Society of America
2021-01 | Journal article
DOI: 10.1002/bes2.1821
Contributors: Kasper P. Hendriks; Karen Bisschop; Hylke H. Kortenbosch; James C. Kavanagh; Anaïs E. A. Larue; Phung Chee‐Chean; Dries Bonte; Elza J. Duijm; Joana Falcão Salles; Alex L. Pigot et al.
Source: check_circle
Crossref

Molecular epidemiology of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire (UK) 2008-2018

2021-01-06 | Other
DOI: 10.1101/2021.01.05.20232553
Contributors: Samuel Lipworth; Karina-Doris Vihta; Kevin Chau; Leanne Barker; Sophie George; James Kavanagh; Timothy Davies; Alison Vaughan; Monique Andersson; Katie Jeffery et al.
Source: check_circle
Crossref

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

eLife
2020 | Journal article
Source: Self-asserted source
James Kavanagh

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

Elife
2020 | Journal article
Source: Self-asserted source
James Kavanagh

Genomic network analysis of an environmental and livestock IncF plasmid population

bioRxiv
2020 | Journal article
Source: Self-asserted source
James Kavanagh

High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing

BioRxiv
2020 | Journal article
Source: Self-asserted source
James Kavanagh

Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission

medRxiv
2020 | Journal article
Source: Self-asserted source
James Kavanagh

Nanopore metagenomic sequencing to investigate nosocomial transmission of human metapneumovirus from a unique genetic group among haematology patients in the United Kingdom

Journal of Infection
2020 | Journal article
Source: Self-asserted source
James Kavanagh

Niche and local geography shape the pangenome of wastewater-and livestock-associated Enterobacteriaceae

bioRxiv
2020 | Journal article
Source: Self-asserted source
James Kavanagh

Optimised use of Oxford Nanopore Flowcells for Hybrid Assemblies

bioRxiv
2020 | Journal article
DOI: 10.1101/2020.03.05.979278
Source: Self-asserted source
James Kavanagh
grade
Preferred source (of 2)‎

Optimizing DNA Extraction Methods for Nanopore Sequencing of Neisseria gonorrhoeae Directly from Urine Samples

Journal of Clinical Microbiology
2020 | Journal article
Source: Self-asserted source
James Kavanagh

Performance characteristics of five immunoassays for SARS-CoV-2: a head-to-head benchmark comparison

The Lancet Infectious Diseases
2020 | Journal article
Source: Self-asserted source
James Kavanagh

Ten years of population-level genomic Escherichia coli and Klebsiella pneumoniae serotype surveillance informs vaccine development for invasive infections

medRxiv
2020 | Journal article
Source: Self-asserted source
James Kavanagh

Optimized use of Oxford Nanopore flowcells for hybrid assemblies

Microbial Genomics
2020-11-01 | Journal article
DOI: 10.1099/mgen.0.000453
Contributors: Samuel Lipworth; Hayleah Pickford; Nicholas Sanderson; Kevin K. Chau; James Kavanagh; Leanne Barker; Alison Vaughan; Jeremy Swann; Monique Andersson; Katie Jeffery et al.
Source: check_circle
Crossref

Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples

Journal of clinical microbiology
2019 | Journal article
Source: Self-asserted source
James Kavanagh

Consequences of symbiont co-infections for insect host phenotypes

journal of animal ecology
2018 | Journal article
Source: Self-asserted source
James Kavanagh

Fieldwork to sample microsnails for diet and microbiome studies along the Kinabatangan River, Sabah, Malaysian Borneo

Journal article
Source: Self-asserted source
James Kavanagh

Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission

Eurosurveillance
Journal article
Source: Self-asserted source
James Kavanagh
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