Personal information

Cancer Systems biology, Machine Learning & A.I., Algorithms for Bioinformatics, Computational modelling and simulation, Bio-medical & SynBio applications
India

Activities

Employment (7)

Shanmugha Arts Science Technology and Research Academy: Thanjavur, Tamil Nadu, IN

2017-06-10 to present | Associate Professor (School of Chemical and Biotechnology)
Employment
Source: Self-asserted source
Ashok Palaniappan

Sri Venkateswara College of Engineering: Sriperumbudur, Tamil Nadu, IN

2016-07-01 to 2017-05-20 | Assistant Professor (Biotechnology)
Employment
Source: Self-asserted source
Ashok Palaniappan

Chettinad Hospital and Research Institute: Kanchipuram, Tamil Nadu, IN

2010-03 to 2016-06-30 | Assistant Professor (Computational Biology)
Employment
Source: Self-asserted source
Ashok Palaniappan

Annamalai University Rajah Muthaiah Medical College: Annamalai Nagar, Tamil Nadu, IN

2008-03 to 2009-03 | Clinical Research Associate
Employment
Source: Self-asserted source
Ashok Palaniappan

University of Illinois at Urbana-Champaign: Urbana, IL, US

2004-08-05 to 2005-12-21 | Research Assistant (National Center for Supercomputing Applications)
Employment
Source: Self-asserted source
Ashok Palaniappan

University of Illinois at Urbana-Champaign: Urbana, IL, US

2002-08-05 to 2004-07-01 | Research Assistant (Beckman Institute for Advanced Science and Technology)
Employment
Source: Self-asserted source
Ashok Palaniappan

University of Illinois at Urbana-Champaign: Urbana, IL, US

2000-08-21 to 2002-07-20 | Teaching Assistant (Biophysics and Computational Biology)
Employment
Source: Self-asserted source
Ashok Palaniappan

Education and qualifications (3)

University of Illinois at Urbana-Champaign: Urbana, IL, US

1999-08-01 to 2005-12-31 | Ph.D. Biophysics and Computational Biology (Center for Biophysics and Computational Biology)
Education
Source: Self-asserted source
Ashok Palaniappan

University of Illinois at Urbana-Champaign: Urbana, IL, US

2000-08-20 to 2003-07-15 | Graduate Teaching Certificate
Qualification
Source: Self-asserted source
Ashok Palaniappan

Anna University Chennai Faculty of Technology: Chennai, Tamil Nadu, IN

1995-08-01 to 1999-05-31 | B.Tech. Industrial Biotechnology (Centre for Biotechnology)
Education
Source: Self-asserted source
Ashok Palaniappan

Professional activities (11)

BMC Artificial Intelligence: London, GB

2024-11-14 to present | Editorial Board Member
Service
Source: Self-asserted source
Ashok Palaniappan

International Society for Evolution, Medicine, and Public Health: Connecticut, US

2023 to present
Membership
Source: Self-asserted source
Ashok Palaniappan

American Chemical Society: Washington, DC, US

2021-12-01 to present | Regular
Membership
Source: Self-asserted source
Ashok Palaniappan

Technology in Cancer Research and Treatment: CA, US

2021-09-20 to present | Editorial Review Board
Invited position
Source: Self-asserted source
Ashok Palaniappan

Indian Biophysical Society: Mumbai, IN

2017-10-25 to present | Life member
Membership
Source: Self-asserted source
Ashok Palaniappan

Indian Science Congress Association: Kolkata, IN

2006-12-10 to present | Life member
Membership
Source: Self-asserted source
Ashok Palaniappan

Sigma Xi: Durham, US

2024-10-08 | Scientific Research Honor Society
Distinction
Source: Self-asserted source
Ashok Palaniappan

Phi Kappa Phi Honor Society: Baton Rouge, LA, US

2004-01-01
Distinction
Source: Self-asserted source
Ashok Palaniappan

Illinois Biophysics Society : Urbana, Illinois, US

2000-08-01 to 2002-07-31 | Secretary
Service
Source: Self-asserted source
Ashok Palaniappan

University of Illinois at Urbana-Champaign: Urbana, IL, US

1999-08-20 to 2000-07-15 | Pre-doctoral Fellowship
Distinction
Source: Self-asserted source
Ashok Palaniappan

Tata Institute of Fundamental Research: Mumbai, Maharashtra, IN

1998-05-01 to 1998-07-15 | Visiting Summer Research Fellowship
Distinction
Source: Self-asserted source
Ashok Palaniappan

Funding (2)

Deep learning applications for biomedical problems

2022-08 to present | Grant
Google Research (CA, CA, US)
Source: Self-asserted source
Ashok Palaniappan

Cancer systems biology of novel stage-specific biomarkers

2018-07 to 2022-03 | Grant
DST-SERB (New Delhi, IN)
GRANT_NUMBER:

EMR/2017/000470/BBMM

Source: Self-asserted source
Ashok Palaniappan

Works (34)

A community effort to optimize sequence-based deep learning models of gene regulation

Nature Biotechnology
2024 | Journal article
EID:

2-s2.0-85206852790

Part of ISSN: 15461696 10870156
Contributors: Rafi, A.M.; Nogina, D.; Penzar, D.; Lee, D.; Lee, D.; Kim, N.; Kim, S.; Kim, D.; Shin, Y.; Kwak, I.-Y. et al.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier
grade
Preferred source (of 3)‎

BC-Predict: Mining of signal biomarkers and multilevel validation of cascade classifier for early-stage breast cancer subtyping and prognosis

medRxiv
2024 | Other
EID:

2-s2.0-85191614014

Contributors: Muthamilselvan, S.; Palaniappan, A.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier
grade
Preferred source (of 4)‎

COADREADx: A comprehensive algorithmic dissection of colorectal cancer unravels salient biomarkers and actionable insights into its discrete progression

PeerJ
2024 | Journal article
EID:

2-s2.0-85208955055

Part of ISSN: 21678359
Contributors: Palaniappan, A.; Muthamilselvan, S.; Sarathi, A.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier
grade
Preferred source (of 16)‎

Multi-Omics Approaches for Building Software as Medical Devices

Technology in Cancer Research and Treatment / Cassyni
2024-11-20 | Lecture | Writing - original draft
Contributors: Ashok Palaniappan; Vaithilingam Natarajan
Source: Self-asserted source
Ashok Palaniappan

GenomicSign: A computational method to discover unique, specific, and amplifiable signatures of target genomic sequences

2024-11-07 | Preprint
Contributors: S. Prasanna Kumar; Ashok Palaniappan
Source: check_circle
Crossref

PRADclass: Hybrid Gleason Grade-Informed Computational Strategy Identifies Consensus Biomarker Features Predictive of Aggressive Prostate Adenocarcinoma

Technology in Cancer Research & Treatment
2024-01 | Journal article
Contributors: Alex Stanley Balraj; Sangeetha Muthamilselvan; Rachanaa Raja; Ashok Palaniappan
Source: check_circle
Crossref
grade
Preferred source (of 10)‎

BrcaDx: precise identification of breast cancer from expression data using a minimal set of features

Frontiers in Bioinformatics
2023 | Journal article
Contributors: Muthamilselvan, Sangeetha; Palaniappan, Ashok
Source: check_circle
Web of Science Researcher Profile Sync
grade
Preferred source (of 5)‎

CESCProg: a compact prognostic model and nomogram for cervical cancer based on miRNA biomarkers

PeerJ
2023-09-27 | Journal article
Part of ISSN: 2167-8359
EID:

2-s2.0-85152148019

EID:

2-s2.0-85173702745

Contributors: Sangeetha Muthamilselvan; Ashok Palaniappan
Source: Self-asserted source
Ashok Palaniappan
grade
Preferred source (of 7)‎

Microfluidics for Profiling miRNA Biomarker Panels in AI-Assisted Cancer Diagnosis and Prognosis.

Technology in cancer research & treatment
2023-01-01 | Journal article | Author
Contributors: Muthamilselvan S; Ramasami Sundhar Baabu P; Ashok Palaniappan
Source: Self-asserted source
Ashok Palaniappan
grade
Preferred source (of 4)‎

miR2Trait: an integrated resource for investigating miRNA-disease associations

PeerJ
2022 | Journal article
EID:

2-s2.0-85139553544

Part of ISSN: 21678359
Contributors: Babu, P.; Palaniappan, A.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier
grade
Preferred source (of 11)‎

Stage-differentiated ensemble modeling of DNA methylation landscapes uncovers salient biomarkers and prognostic signatures in colorectal cancer progression

PLoS ONE
2022 | Journal article
EID:

2-s2.0-85125214308

Part of ISSN: 19326203
Contributors: Muthamilselvan, S.; Raghavendran, A.; Palaniappan, A.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier
grade
Preferred source (of 10)‎

End-to-end computational approach to the design of RNA biosensors for detecting miRNA biomarkers of cervical cancer

Synthetic and Systems Biotechnology
2022-06 | Journal article
Part of ISSN: 2405-805X
Source: Self-asserted source
Ashok Palaniappan
grade
Preferred source (of 7)‎

NanoTox: Development of a Parsimonious In Silico Model for Toxicity Assessment of Metal-Oxide Nanoparticles Using Physicochemical Features

ACS Omega
2021-05-04 | Journal article
Contributors: Nilesh Anantha Subramanian; Ashok Palaniappan
Source: check_circle
Crossref
grade
Preferred source (of 8)‎

Computational studies of drug repurposing targeting P-glycoprotein mediated multidrug-resistance phenotypes in agents of neglected tropical diseases

bioRxiv
2020 | Other
EID:

2-s2.0-85098835710

Part of ISSN: 26928205
Contributors: Jaishankar, N.; Muthamilselvan, S.; Palaniappan, A.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier

Riboflow: Using Deep Learning to Classify Riboswitches With ∼99% Accuracy

Frontiers in Bioengineering and Biotechnology
2020 | Journal article
EID:

2-s2.0-85088742610

Part of ISBN:

22964185

Contributors: Premkumar, K.A.R.; Bharanikumar, R.; Palaniappan, A.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier
grade
Preferred source (of 9)‎

Novel significant stage-specific differentially expressed genes in hepatocellular carcinoma

BMC Cancer
2019 | Journal article
URI:

https://doi.org/10.6084/m9.figshare.6455024

Contributors: Sarathi, A.; Palaniappan, A.
Source: Self-asserted source
Ashok Palaniappan
grade
Preferred source (of 3)‎

Computational pharmacogenetics of P-glycoprotein mediated antiepileptic drug resistance

Open Bioinformatics Journal
2018 | Journal article
EID:

2-s2.0-85055751440

Contributors: Varghese, S.; Palaniappan, A.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier
grade
Preferred source (of 4)‎

PromoterPredict: sequence-based modelling of Escherichia coli sigma(70) promoter strength yields logarithmic dependence between promoter strength and sequence

PeerJ
2018 | Journal article
Contributors: Bharanikumar, Ramit; Premkumar, Keshav Aditya R.; Palaniappan, Ashok
Source: check_circle
Web of Science Researcher Profile Sync
grade
Preferred source (of 13)‎

Fourier Analysis of Conservation Patterns in Protein Secondary Structure

Computational and Structural Biotechnology Journal
2017 | Journal article
Contributors: Palaniappan, Ashok; Jakobsson, Eric
Source: check_circle
Web of Science Researcher Profile Sync
grade
Preferred source (of 5)‎

Computational determination of novel biomarkers of colon cancer

Editions universitaires europeennes
2017-04-03 | Book
Source: Self-asserted source
Ashok Palaniappan

Bayesian medicine: An approach to systematic diagnosis

ChettinadHealthCity Medical Journal
2016 | Journal article
Source: Self-asserted source
Ashok Palaniappan

Computational identification of novel stage-specific biomarkers in colorectal cancer progression

PLoS ONE
2016 | Journal article
EID:

2-s2.0-84973121698

Contributors: Palaniappan, A.; Ramar, K.; Ramalingam, S.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier
grade
Preferred source (of 2)‎

Systems analysis of cancer progression

2015 | Journal article
Source: check_circle
DataCite

The promise of vaccinology

ChettinadHealthCity Medical Journal
2014-12-01 | Journal article
Source: Self-asserted source
Ashok Palaniappan

Evolutionary medicine: seeking a fuller understanding of disease

Chettinad HealthCity Medical Journal
2013 | Journal article
Source: Self-asserted source
Ashok Palaniappan

Computational Microscope of Potassium channels

Lambert Academic Publishing
2013-12-26 | Book
Source: Self-asserted source
Ashok Palaniappan

Detection of an ancient principle and an elegant solution to the protein classification problem

arXiv preprint arXiv:0708.2121
2007 | Journal article
Source: Self-asserted source
Ashok Palaniappan
grade
Preferred source (of 2)‎

A robust methodology for inferring physiology of a protein family: application to K+-ion channel family

arXiv preprint q-bio/0612042
2006 | Journal article
Source: Self-asserted source
Ashok Palaniappan

A Surprising Clarification of the Mechanism of Ion-channel Voltage-Gating

arXiv preprint q-bio/0604011
2006 | Journal article
Source: Self-asserted source
Ashok Palaniappan

Evolutionary Analysis of Biological Excitability

arXiv preprint q-bio/0609023
2006 | Journal article
Source: Self-asserted source
Ashok Palaniappan

Mitochondrial localization and putative signaling function of sucrose synthase in maize

Journal of Biological Chemistry
2006 | Journal article
EID:

2-s2.0-33744916584

Contributors: Subbaiah, C.C.; Palaniappan, A.; Duncan, K.; Rhoads, D.M.; Huber, S.C.; Sachs, M.M.
Source: Self-asserted source
Ashok Palaniappan via Scopus - Elsevier
grade
Preferred source (of 2)‎

Theory-based investigations of the potassium-selective ion channel protein family

2005 | Dissertation or Thesis
Source: Self-asserted source
Ashok Palaniappan

Insights into ion channel evolution

Biophysical Journal
2004 | Journal article
Contributors: Palaniappan, A; Jakobsson, E
Source: check_circle
Web of Science Researcher Profile Sync

Detailed classification and functional prediction of potassium channels from sequence analysis of the permeation pathway domain

Biophysical Journal
2003 | Journal article
Contributors: Palaniappan, A; Becker, A; Rata, I; Jakobsson, E
Source: check_circle
Web of Science Researcher Profile Sync

Peer review (115 reviews for 39 publications/grants)

Review activity for Analyst. (1)
Review activity for Annals of medicine (1)
Review activity for APMIS. (2)
Review activity for Applied sciences. (2)
Review activity for Bioengineered. (2)
Review activity for Biology. (3)
Review activity for BMC cancer (1)
Review activity for BMC pulmonary medicine (2)
Review activity for Briefings in bioinformatics. (3)
Review activity for British journal of cancer. (2)
Review activity for Cancer Biology & Medicine. (1)
Review activity for Cancer biology & therapy. (2)
Review activity for Cancer informatics. (1)
Review activity for Cancer investigation. (1)
Review activity for Clinical medicine insights. Oncology. (6)
Review activity for Discover Oncology. (9)
Review activity for Disease markers. (1)
Review activity for DNA and cell biology. (4)
Review activity for Electronic Journal of Biotechnology. (2)
Review activity for Frontiers in cell and developmental biology. (1)
Review activity for Frontiers in immunology. (1)
Review activity for Frontiers in medicine. (1)
Review activity for Frontiers in surgery. (1)
Review activity for Genomics, Proteomics & Bioinformatics. (1)
Review activity for Genomics, proteomics and bioinformatics. (1)
Review activity for International journal of genomics. (1)
Review activity for International journal of molecular sciences. (6)
Review activity for Journal of international medical research. (2)
Review activity for Journal of nanobiotechnology (1)
Review activity for Journal of oncology. (1)
Review activity for Medicine. (2)
Review activity for Molecular cancer (1)
Review activity for PeerJ. (9)
Review activity for PeerJ. (6)
Review activity for PloS one. (7)
Review activity for SAR and QSAR in environmental research. (1)
Review activity for Scientific reports. (3)
Review activity for Technology in cancer research & treatment. (21)
Review activity for The British journal of radiology. (2)