Personal information

Activities

Employment (4)

University of California San Francisco School of Medicine: San Francisco, CA, US

2014-07-01 to present | Associate Professor (Laboratory Medicine)
Employment
Source: Self-asserted source
Charles Chiu

University of California San Francisco School of Medicine: San Francisco, CA, US

2008-10-01 to 2014-07-01 | Assistant Professor (Laboratory Medicine)
Employment
Source: Self-asserted source
Charles Chiu

University of California San Francisco School of Medicine: San Francisco, CA, US

2003-06-01 to 2008-10-01 | Clinical Fellow, Postdoctoral Fellow (Medicine, Division of Infectious Diseases)
Employment
Source: Self-asserted source
Charles Chiu

University of California San Francisco Medical Center at Parnassus: San Francisco, CA, US

2001-06-01 to 2003-06-01 | Resident (Medicine)
Employment
Source: Self-asserted source
Charles Chiu

Education and qualifications (2)

University of California Berkeley: Berkeley, CA, US

1989-05-01 to 2003-05-01 | B.S. (Electrical Engineering and Computer Science)
Education
Source: Self-asserted source
Charles Chiu

Ronald Reagan UCLA Medical Center: Los Angeles, CA, US

1993-05-01 to 2001-06-01 | MD/PhD (Biophysics)
Education
Source: Self-asserted source
Charles Chiu

Funding (5)

Deep Sequencing Clinical Analysis Tool for Infectious Disease

2013-08-01 to 2015-03-31 | Grant
UC Proof of Concept Grant (CA, US)
GRANT_NUMBER:

267212

Source: Self-asserted source
Charles Chiu via DimensionsWizard

Broad Detection of Infectious Agents in Blood by Microarrays and Deep Sequencing

Source: Self-asserted source
Charles Chiu via DimensionsWizard

A Rapid Pan-Viral Microarray Diagnostic for Category A-C Biodefense Pathogens

2010-08-09 to 2013-06-30 | Grant
National Institute of Allergy and Infectious Diseases (Bethesda, US)
GRANT_NUMBER: 1R56AI089532-01
Source: Self-asserted source
Charles Chiu via DimensionsWizard

Comprehensive Diagnostics for Viral Encephalitis/ Meningitis

2010-07-01 to 2014-06-30 | Grant
UC Discovery Grants (formerly IUCRP) (CA, US)
GRANT_NUMBER:

180966

Source: Self-asserted source
Charles Chiu via DimensionsWizard

Virus Detection Using Microarrays and Characterization of a Novel Cardiovirus

2008-09-01 to 2011-07-31 | Grant
National Institute of Allergy and Infectious Diseases (Bethesda, US)
GRANT_NUMBER: 5K08AI074913-03
Source: Self-asserted source
Charles Chiu via DimensionsWizard

Works (50 of 96)

Items per page:
Page 1 of 2

Laboratory validation of a clinical metagenomic next-generation sequencing assay for respiratory virus detection and discovery

2024-05-31 | Preprint
Contributors: Charles Chiu; Jessica Tan; Venice Servellita; Doug Stryke; Emily Kelly; Jessica Streithorst; Nanami Sumimoto; Abiodun Foresythe; Hee Jae Huh; Jenny Nguyen et al.
Source: check_circle
Crossref

Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases

Nature Microbiology
2023-06-12 | Journal article
Contributors: Naomi L. Haddock; Layla J. Barkal; Nikhil Ram-Mohan; Gernot Kaber; Charles Y. Chiu; Ami S. Bhatt; Samuel Yang; Paul L. Bollyky
Source: check_circle
Crossref

Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two African Individuals Enrolled in Blood-Borne Surveillance

Viruses
2023-04 | Journal article | Author
Contributors: Gregory S. Orf; Ana Olivo; Barbara Harris; Sonja L. Weiss; Asmeeta Achari; Guixia Yu; Scot Federman; Dora Mbanya; Linda James; Samuel Mampunza et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute

The circulating phageome reflects bacterial infections

2022-08-16 | Preprint
Contributors: Naomi Haddock; Layla Barkal; Nikhil Ram-Mohan; Gernot Kaber; Charles Chiu; Ami Bhatt; Samuel Yang; Paul bollyky
Source: check_circle
Crossref

The circulating phageome reflects bacterial infections

2022-08-15 | Preprint
Contributors: NL Haddock; LJ Barkal; N Ram-Mohan; G Kaber; CY Chiu; AS Bhatt; S Yang; PL Bollyky
Source: check_circle
Crossref

A lateral flow-based at-home test for detection of SARS-CoV-2 v1

2021-03-11 | Preprint
Contributors: Peng Xu; Venice Servellita; Krzysztof Langer; Dan Weisgerber; Gordon Murtaugh; Adam R Abate; Charles Chiu
Source: check_circle
Crossref

Sensitive lateral flow-based SARS-CoV-2 at-home test v1

2020-12-20 | Preprint
Contributors: Peng Xu; Venice Servellita; Krzysztof Langer; Gordon Murtaugh; Adam R Abate; Charles Chiu
Source: check_circle
Crossref

Rapid and high-throughput SARS-CoV-2 screening v3

2020-12-04 | Preprint
Contributors: Xu Peng; Venice Servellita; Krzysztof Langer; Gordon Murtaugh; Adam R Abate; Charles Chiu
Source: check_circle
Crossref

Droplet LAMP based point-of-care assay for SARS-CoV-2 viral load quantification v2

2020-11-13 | Preprint
Contributors: Peng Xu; Venice Servellita; Krzysztof Langer; Gordon Murtaugh; Charles Chiu; Adam R Abate
Source: check_circle
Crossref

Rapid and high-throughput SARS-CoV-2 screening v2

2020-11-13 | Preprint
Contributors: Xu Peng; Venice Servellita; Krzysztof Langer; Gordon Murtaugh; Adam R Abate; Charles Chiu
Source: check_circle
Crossref

Sensitive lateral flow-based SARS-CoV-2 at-home test v2

2020-11-13 | Preprint
Contributors: Peng Xu; Venice Servellita; Krzysztof Langer; Gordon Murtaugh; Adam R Abate; Charles Chiu
Source: check_circle
Crossref

Competitive SARS-CoV-2 Serology Reveals Most Antibodies Targeting the Spike Receptor-Binding Domain Compete for ACE2 Binding

mSphere
2020-10-28 | Journal article
Contributors: James R. Byrnes; Xin X. Zhou; Irene Lui; Susanna K. Elledge; Jeff E. Glasgow; Shion A. Lim; Rita P. Loudermilk; Charles Y. Chiu; Taia T. Wang; Michael R. Wilson et al.
Source: check_circle
Crossref

Droplet LAMP based point-of-care assay for SARS-CoV-2 viral load quantification v1

2020-09-08 | Preprint
Contributors: Peng Xu; Venice Servellita; Krzysztof Langer; Gordon Murtaugh; Charles Chiu; Adam R Abate
Source: check_circle
Crossref

Rapid and high-throughput SARS-CoV-2 screening without sample processing v1

2020-09-08 | Preprint
Contributors: Xu Peng; Venice Servellita; Krzysztof Langer; Gordon Murtaugh; Adam R Abate; Charles Chiu
Source: check_circle
Crossref

Sensitive lateral flow-based SARS-CoV-2 at-home test v1

2020-09-08 | Preprint
Contributors: Peng Xu; Venice Servellita; Krzysztof Langer; Gordon Murtaugh; Adam R Abate; Charles Chiu
Source: check_circle
Crossref

Direct Comparison of SARS-CoV-2 Analytical Limits of Detection across Seven Molecular Assays

Journal of Clinical Microbiology
2020-08-24 | Journal article
Contributors: Becky Fung; Allan Gopez; Venice Servellita; Shaun Arevalo; Coral Ho; Anne Deucher; Ed Thornborrow; Charles Chiu; Steve Miller; Alexander J. McAdam
Source: check_circle
Crossref

A SARS-CoV-2 serological assay to determine the presence of blocking antibodies that compete for human ACE2 binding

2020-05-29 | Other
Contributors: James R. Byrnes; Xin X. Zhou; Irene Lui; Susanna K. Elledge; Jeff E. Glasgow; Shion A. Lim; Rita Loudermilk; Charles Y. Chiu; Michael R. Wilson; Kevin K. Leung et al.
Source: check_circle
Crossref

Association of COVID-19 Infections in San Francisco in Early March 2020 with Travel to New York and Europe

2020-04-07 | Other
Contributors: Wei Gu; Kevin Reyes; Elaine Hsu; Steve Miller; Charles Chiu
Source: check_circle
Crossref

Human Tibroviruses: Commensals or Lethal Pathogens?

Viruses
2020-02-25 | Journal article
Contributors: Jens H. Kuhn; Hào Pān; Charles Y. Chiu; Matthew Stremlau
Source: check_circle
Crossref

Point-Counterpoint: Should We Be Performing Metagenomic Next-Generation Sequencing for Infectious Disease Diagnosis in the Clinical Laboratory?

Journal of Clinical Microbiology
2020-02-24 | Journal article
Contributors: Steve Miller; Charles Chiu; Kyle G. Rodino; Melissa B. Miller; Nathan Ledeboer
Source: check_circle
Crossref

Clinical metagenomics

Nature Reviews Genetics
2019-06 | Journal article
Contributors: Charles Y. Chiu; Steven A. Miller
Source: check_circle
Crossref

Single-molecule sequencing detection of N6-methyladenine in microbial reference materials

Nature Communications
2019-02-04 | Journal article
Contributors: Alexa B. R. McIntyre; Noah Alexander; Kirill Grigorev; Daniela Bezdan; Heike Sichtig; Charles Y. Chiu; Christopher E. Mason
Source: check_circle
Crossref

Differentiation enhances Zika virus infection of neuronal brain cells

Scientific Reports
2018-09-28 | Journal article
Contributors: Claudia Sánchez-San Martín; Tony Li; Jerome Bouquet; Jessica Streithorst; Guixia Yu; Aditi Paranjpe; Charles Y. Chiu
Source: check_circle
Crossref

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

Scientific Reports
2017-12-21 | Journal article
Contributors: Sarah L. Castro-Wallace; Charles Y. Chiu; Kristen K. John; Sarah E. Stahl; Kathleen H. Rubins; Alexa B. R. McIntyre; Jason P. Dworkin; Mark L. Lupisella; David J. Smith; Douglas J. Botkin et al.
Source: check_circle
Crossref

Experimental Zika Virus Inoculation in a New World Monkey Model Reproduces Key Features of the Human Infection

Scientific Reports
2017-12-07 | Journal article
Contributors: Charles Y. Chiu; Claudia Sánchez-San Martín; Jerome Bouquet; Tony Li; Shigeo Yagi; Manasi Tamhankar; Vida L. Hodara; Laura M. Parodi; Sneha Somasekar; Guixia Yu et al.
Source: check_circle
Crossref

Metagenomic-based Surveillance of Pacific Coast tick Dermacentor occidentalis Identifies Two Novel Bunyaviruses and an Emerging Human Ricksettsial Pathogen

Scientific Reports
2017-09-25 | Journal article
Contributors: Jerome Bouquet; Michael Melgar; Andrea Swei; Eric Delwart; Robert S. Lane; Charles Y. Chiu
Source: check_circle
Crossref

First Complete Genome Sequence of Corynebacterium riegelii

Genome Announcements
2017-03-30 | Journal article
Contributors: Alexander L. Greninger; Jessica Streithorst; Charles Y. Chiu; Steve Miller
Source: check_circle
Crossref

A mouse model of paralytic myelitis caused by enterovirus D68

PLOS Pathogens
2017-02-23 | Journal article
Contributors: Alison M. Hixon; Carolyn B. Coyne; Guixia Yu; J. Smith Leser; Shigeo Yagi; Penny Clarke; Charles Y. Chiu; Kenneth L. Tyler
Source: check_circle
Crossref

Beatrice Hill Virus Represents a Novel Species in the Genus Tibrovirus ( Mononegavirales : Rhabdoviridae )

Genome Announcements
2017-01-26 | Journal article
Contributors: Michael R. Wiley; Karla Prieto; Kim R. Blasdell; Yíngyún Caì; Cristine Campos Lawson; Peter J. Walker; Charles Y. Chiu; Gustavo Palacios; Jens H. Kuhn
Source: check_circle
Crossref

Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: The continuing case for reference genome sequencing [Genome Med. 7 (2015) 113]

Genome Medicine
2016 | Journal article
EID:

2-s2.0-84953709778

Contributors: Greninger, A.L.; Messacar, K.; Dunnebacke, T.; Naccache, S.N.; Federman, S.; Bouquet, J.; Mirsky, D.; Nomura, Y.; Yagi, S.; Glaser, C. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

First Draft Genome Sequences of Neisseria sp. Strain 83E34 and Neisseria sp. Strain 74A18 , Previously Identified as CDC Eugonic Fermenter 4b Species

Genome Announcements
2016-12-29 | Journal article
Contributors: Alexander L. Greninger; Jessica Streithorst; Charles Y. Chiu; Steve Miller
Source: check_circle
Crossref

Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing

Journal of Clinical Microbiology
2016-09 | Journal article
Contributors: Silvia I. Sardi; Sneha Somasekar; Samia N. Naccache; Antonio C. Bandeira; Laura B. Tauro; Gubio S. Campos; Charles Y. Chiu; M. J. Loeffelholz
Source: check_circle
Crossref

Antibodies to the Novel Human Pegivirus 2 Are Associated with Active and Resolved Infections

Journal of Clinical Microbiology
2016-08 | Journal article
Contributors: Kelly E. Coller; Michael G. Berg; Matthew Frankel; Kenn Forberg; Rita Surani; Charles Y. Chiu; John Hackett, Jr.; George J. Dawson; Y.-W. Tang
Source: check_circle
Crossref

A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): A retrospective cohort study

The Lancet Infectious Diseases
2015 | Journal article
EID:

2-s2.0-84929503532

Contributors: Greninger, A.L.; Naccache, S.N.; Messacar, K.; Clayton, A.; Yu, G.; Somasekar, S.; Federman, S.; Stryke, D.; Anderson, C.; Yagi, S. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Acute flaccid myelitis of unknown etiology in California, 2012-2015

JAMA - Journal of the American Medical Association
2015 | Journal article
EID:

2-s2.0-84951952322

Contributors: Van Haren, K.; Ayscue, P.; Waubant, E.; Clayton, A.; Sheriff, H.; Yagi, S.; Glenn-Finer, R.; Padilla, T.; Strober, J.B.; Aldrovandi, G. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data

Nucleic Acids Research
2015 | Journal article
EID:

2-s2.0-84930682565

Contributors: Deng, X.; Naccache, S.N.; Ng, T.; Federman, S.; Li, L.; Chiu, C.Y.; Delwart, E.L.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: The continuing case for reference genome sequencing

Genome Medicine
2015 | Journal article
EID:

2-s2.0-84952984120

Contributors: Greninger, A.L.; Messacar, K.; Dunnebacke, T.; Naccache, S.N.; Federman, S.; Bouquet, J.; Mirsky, D.; Nomura, Y.; Yagi, S.; Glaser, C. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing

Clinical Infectious Diseases
2015 | Journal article
EID:

2-s2.0-84929461429

Contributors: Naccache, S.N.; Peggs, K.S.; Mattes, F.M.; Phadke, R.; Garson, J.A.; Grant, P.; Samayoa, E.; Federman, S.; Miller, S.; Lunn, M.P. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection

PLoS Pathogens
2015 | Journal article
EID:

2-s2.0-84953338627

Contributors: Berg, M.G.; Lee, D.; Coller, K.; Frankel, M.; Aronsohn, A.; Cheng, K.; Forberg, K.; Marcinkus, M.; Naccache, S.N.; Dawson, G. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

DNA microarray for detection of gastrointestinal viruses

Journal of Clinical Microbiology
2015 | Journal article
EID:

2-s2.0-84919464055

Contributors: Martínez, M.A.; De Los Dolores Soto-Del Río, M.; Gutiérrez, R.M.; Chiu, C.Y.; Greninger, A.L.; Contreras, J.F.; López, S.; Arias, C.F.; Isa, P.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Genomic assays for identification of chikungunya virus in blood donors, Puerto Rico, 2014

Emerging Infectious Diseases
2015 | Journal article
EID:

2-s2.0-84937432484

Contributors: Chiu, C.Y.; Bres, V.; Yu, G.; Krysztof, D.; Naccache, S.N.; Lee, D.; Pfeil, J.; Linnen, J.M.; Stramer, S.L.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Idiopathic pneumonia syndrome after hematopoietic cell transplantation: Evidence of occult infectious etiologies

Blood
2015 | Journal article
EID:

2-s2.0-84931274921

Contributors: Seo, S.; Renaud, C.; Kuypers, J.M.; Chiu, C.Y.; Huang, M.-L.; Samayoa, E.; Xie, H.; Yu, G.; Fisher, C.E.; Gooley, T.A. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

No viral association found in a set of differentiated vulvar intraepithelial neoplasia cases by human papillomavirus and pan-viral microarray testing

PLoS ONE
2015 | Journal article
EID:

2-s2.0-84928923221

Contributors: Saglam, O.; Samayoa, E.; Somasekar, S.; Naccache, S.; Iwasaki, A.; Chiu, C.Y.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

Genome Medicine
2015 | Journal article
EID:

2-s2.0-84942518081

Contributors: Greninger, A.L.; Naccache, S.N.; Federman, S.; Yu, G.; Mbala, P.; Bres, V.; Stryke, D.; Bouquet, J.; Somasekar, S.; Linnen, J.M. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Two rapidly growing mycobacterial species isolated from a brain abscess: First whole-genome sequences of Mycobacterium immunogenum and Mycobacterium llatzerense

Journal of Clinical Microbiology
2015 | Journal article
EID:

2-s2.0-84932642822

Contributors: Greninger, A.L.; Langelier, C.; Cunningham, G.; Keh, C.; Melgar, M.; Chiu, C.Y.; Miller, S.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Genome Sequence of Bivens Arm Virus, a Tibrovirus Belonging to the Species Tibrogargan virus ( Mononegavirales : Rhabdoviridae )

Genome Announcements
2015-04-30 | Journal article
Contributors: Michael Lauck; Shuǐqìng Yú; Yíngyún Caì; Lisa E. Hensley; Charles Y. Chiu; David H. O’Connor; Jens H. Kuhn
Source: check_circle
Crossref

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

Genome Research
2014 | Journal article
EID:

2-s2.0-84904255806

Contributors: Naccache, S.N.; Federman, S.; Veeraraghavan, N.; Zaharia, M.; Lee, D.; Samayoa, E.; Bouquet, J.; Greninger, A.L.; Luk, K.-C.; Enge, B. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Actionable diagnosis of neuroleptospirosis by next-generation sequencing

New England Journal of Medicine
2014 | Journal article
EID:

2-s2.0-84902602767

Contributors: Wilson, M.R.; Naccache, S.N.; Samayoa, E.; Biagtan, M.; Bashir, H.; Yu, G.; Salamat, S.M.; Somasekar, S.; Federman, S.; Miller, S. et al.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Bas-Congo Virus: A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever

Emerging Infectious Diseases: Clinical Case Studies
2014 | Book
EID:

2-s2.0-84942795900

Contributors: Grard, G.; Fair, J.; Chiu, C.; Leroy, E.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier

Concerns over the origin of NIH-CQV, a novel virus discovered in Chinese patients with seronegative hepatitis

Proceedings of the National Academy of Sciences of the United States of America
2014 | Journal article
EID:

2-s2.0-84896508411

Contributors: Naccache, S.N.; Hackett, J.; Delwart, E.L.; Chiu, C.Y.
Source: Self-asserted source
Charles Chiu via Scopus - Elsevier
Items per page:
Page 1 of 2

Peer review (14 reviews for 10 publications/grants)

Review activity for Clinical infectious diseases : (1)
Review activity for Communications medicine. (1)
Review activity for Genome medicine. (1)
Review activity for Journal of infectious diseases. (1)
Review activity for Nature biomedical engineering. (1)
Review activity for Nature biotechnology. (2)
Review activity for Nature communications (3)
Review activity for Nature medicine. (1)
Review activity for Nature microbiology. (2)
Review activity for PLoS neglected tropical diseases (1)