Personal information

Other IDs

Loop profile: 431722

Activities

Collapse all

Employment (3)

Ragon Institute of MGH, MIT and Harvard: Cambridge, Massachusetts, US

2019-05 to present | Postdoctoral Research Fellow
Employment
Source: Self-asserted source
Deniz Cizmeci

University of Oxford: Oxford, Oxfordshire, GB

2018-03 to 2019-05 | Computational biologist (Nuffield Department of Medicine (NDM))
Employment
Source: Self-asserted source
Deniz Cizmeci

Imperial College London: London, London, GB

2017-01 to 2018-02 | Research Assistant in Bioinformatics (Medicine)
Employment
Source: Self-asserted source
Deniz Cizmeci

Education and qualifications (4)

University of Exeter: Exeter, Devon, GB

2012-09 to 2016-12 | PhD (Mathematics)
Education
Source: Self-asserted source
Deniz Cizmeci

Koç Üniversitesi: Istanbul, TR

2010-09 to 2012-08 | M.Sc. (Chemical and Biological Engineering)
Education
Source: Self-asserted source
Deniz Cizmeci

Koç Üniversitesi: Istanbul, TR

2006-09 to 2010-06 | B.Sc. (Chemical and Biological Engineering)
Education
Source: Self-asserted source
Deniz Cizmeci

Koç Üniversitesi: Istanbul, TR

2006-09 to 2010-06 | B.Sc. (Chemistry)
Education
Source: Self-asserted source
Deniz Cizmeci

Works (21)

Distinct Functional Humoral Immune Responses Are Induced after Live Attenuated and Inactivated Seasonal Influenza Vaccination

The Journal of Immunology
2024-01-01 | Journal article
DOI: 10.4049/jimmunol.2200956
Contributors: Xin Tong; Yixiang Deng; Deniz Cizmeci; Laura Fontana; Michael A Carlock; Hannah B Hanley; Ryan P McNamara; Daniel Lingwood; Ted M Ross; Galit Alter
Source: check_circle
Crossref

ChAdOx1 nCoV-19 (AZD1222) vaccine-induced Fc receptor binding tracks with differential susceptibility to COVID-19

Nature Immunology
2023-07 | Journal article
DOI: 10.1038/s41590-023-01513-1
Contributors: Paulina Kaplonek; Deniz Cizmeci; Gaurav Kwatra; Alane Izu; Jessica Shih-Lu Lee; Harry L. Bertera; Stephanie Fischinger; Colin Mann; Fatima Amanat; Wenjun Wang et al.
Source: check_circle
Crossref

Robust induction of functional humoral response by a plant-derived Coronavirus-like particle vaccine candidate for COVID-19

npj Vaccines
2023-02-13 | Journal article
DOI: 10.1038/s41541-023-00612-2
Contributors: Paulina Kaplonek; Deniz Cizmeci; Jessica Shih-Lu Lee; Sally A. Shin; Stephanie Fischinger; Philipe Gobeil; Stéphane Pillet; Nathalie Charland; Brian J. Ward; Galit Alter
Source: check_circle
Crossref

Inflammation and immune activation are associated with risk of Mycobacterium tuberculosis infection in BCG-vaccinated infants

Nature Communications
2022-11-03 | Journal article
DOI: 10.1038/s41467-022-34061-7
Contributors: Iman Satti; Rachel E. Wittenberg; Shuailin Li; Stephanie A. Harris; Rachel Tanner; Deniz Cizmeci; Ashley Jacobs; Nicola Williams; Humphrey Mulenga; Helen A. Fletcher et al.
Source: check_circle
Crossref

Polysaccharide and conjugate vaccines to Streptococcus pneumoniae generate distinct humoral responses

Science Translational Medicine
2022-08-03 | Journal article
DOI: 10.1126/scitranslmed.abm4065
Contributors: Leela R. L. Davies; Deniz Cizmeci; Wenyue Guo; Corinne Luedemann; Ronika Alexander-Parrish; Lindsay Grant; Raul Isturiz; Christian Theilacker; Luis Jodar; Bradford D. Gessner et al.
Source: check_circle
Crossref

A systems serology analysis of correlates of protection against cholera

2022-06-14 | Preprint
DOI: 10.1101/2022.06.08.22276167
Contributors: Kirsten E. Wiens; Anita S. Iyer; Taufiqur R. Bhuiyan; Lenette L. Lu; Deniz Cizmeci; Matthew J. Gorman; Dansu Yuan; Rachel L. Becker; Edward T. Ryan; Stephen B. Calderwood et al.
Source: check_circle
Crossref

mRNA-1273 and BNT162b2 COVID-19 vaccines elicit antibodies with differences in Fc-mediated effector functions

Science Translational Medicine
2022-05-18 | Journal article
DOI: 10.1126/scitranslmed.abm2311
Contributors: Paulina Kaplonek; Deniz Cizmeci; Stephanie Fischinger; Ai-ris Collier; Todd Suscovich; Caitlyn Linde; Thomas Broge; Colin Mann; Fatima Amanat; Diana Dayal et al.
Source: check_circle
Crossref

Inflammation and immune activation are associated with risk of Mycobacterium tuberculosis infection in BCG-vaccinated infants

2022-05-17 | Preprint
DOI: 10.21203/rs.3.rs-1632594/v1
Contributors: Iman Satti; Rachel Wittenberg; Shuailin Li; Stephanie Harris; Rachel Tanner; Deniz Cizmeci; Ashley Jacobs; Nicola Williams; Humphrey Mulenga; Helen Fletcher et al.
Source: check_circle
Crossref

mRNA-1273 vaccine-induced antibodies maintain Fc effector functions across SARS-CoV-2 variants of concern

Immunity
2022-02 | Journal article
DOI: 10.1016/j.immuni.2022.01.001
Contributors: Paulina Kaplonek; Stephanie Fischinger; Deniz Cizmeci; Yannic C. Bartsch; Jaewon Kang; John S. Burke; Sally A. Shin; Diana Dayal; Patrick Martin; Colin Mann et al.
Source: check_circle
Crossref

Sequence and vector shapes vaccine induced antibody effector functions in HIV vaccine trials

PLOS Pathogens
2021-11-29 | Journal article
DOI: 10.1371/journal.ppat.1010016
Contributors: Stephanie Fischinger; Guido Silvestri; Deniz Cizmeci; Davy Deng; Shannon P. Grant; Nicole Frahm; Julie McElrath; Jonathan Fuchs; Pierre-Alexandre Bart; Giuseppe Pantaleo et al.
Source: check_circle
Crossref

Mining HIV controllers for broad and functional antibodies to recognize and eliminate HIV-infected cells

Cell Reports
2021-05 | Journal article
DOI: 10.1016/j.celrep.2021.109167
Contributors: Evan D. Rossignol; Anne-Sophie Dugast; Hacheming Compere; Christopher A. Cottrell; Jeffrey Copps; Shu Lin; Deniz Cizmeci; Michael S. Seaman; Margaret E. Ackerman; Andrew B. Ward et al.
Source: check_circle
Crossref

Distinct clonal evolution of B-cells in HIV controllers with neutralizing antibody breadth.

eLife
2021-04-12 | Journal article
DOI: 10.7554/elife.62648
PMID: 33843586
PMC: PMC8041465
Source: Self-asserted source
Deniz Cizmeci

Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2

JCI Insight
2021-03-22 | Journal article
DOI: 10.1172/jci.insight.146242
Contributors: Krystle K.Q. Yu; Stephanie Fischinger; Malisa T. Smith; Caroline Atyeo; Deniz Cizmeci; Caitlin R. Wolf; Erik D. Layton; Jennifer K. Logue; Melissa S. Aguilar; Kiel Shuey et al.
Source: check_circle
Crossref

Pregnancy has a minimal impact on the acute transcriptional signature to vaccination

npj Vaccines
2020-12 | Journal article
DOI: 10.1038/s41541-020-0177-6
Part of ISSN: 2059-0105
Source: Self-asserted source
Deniz Cizmeci

Identification of potential biomarkers of vaccine inflammation in mice

2019-05-14 | Journal article
DOI: 10.7554/elife.46149
Part of ISSN: 2050-084X
Source: Self-asserted source
Deniz Cizmeci
grade
Preferred source (of 2)‎

Tools for Assessing the Protective Efficacy of TB Vaccines in Humans: in vitro Mycobacterial Growth Inhibition Predicts Outcome of in vivo Mycobacterial Infection.

Frontiers in immunology
2019-01-01 | Journal article
DOI: 10.3389/fimmu.2019.02983
PMID: 31998295
PMC: PMC6968127
Source: Self-asserted source
Deniz Cizmeci
grade
Preferred source (of 2)‎

Combined Skin and Muscle DNA Priming Provides Enhanced Humoral Responses to a Human Immunodeficency Virus Type 1 Clade C Envelope Vaccine.

Human gene therapy
2018-09 | Journal article
DOI: 10.1089/hum.2018.075
PMID: 30027768
PMC: PMC6214652
Contributors: Cheeseman HM; Day S; McFarlane LR; Fleck S; Miller A; Cole T; Sousa-Santos N; Cope A; Cizmeci D; Tolazzi M et al.
Source: Self-asserted source
Deniz Cizmeci via Europe PubMed Central

Isolation and Characterization of Antigen-Specific Plasmablasts Using a Novel Flow Cytometry-Based Ig Capture Assay.

Journal of immunology (Baltimore, Md. : 1950)
2017-11 | Journal article
DOI: 10.4049/jimmunol.1701253
PMID: 29118244
PMC: PMC5720343
Contributors: Pinder CL; Kratochvil S; Cizmeci D; Muir L; Guo Y; Shattock RJ; McKay PF
Source: Self-asserted source
Deniz Cizmeci via Europe PubMed Central

A Phase 1 Human Immunodeficiency Virus Vaccine Trial for Cross-Profiling the Kinetics of Serum and Mucosal Antibody Responses to CN54gp140 Modulated by Two Homologous Prime-Boost Vaccine Regimens.

Frontiers in immunology
2017-05 | Journal article
DOI: 10.3389/fimmu.2017.00595
PMID: 28596770
PMC: PMC5442169
Contributors: Kratochvil S; McKay PF; Kopycinski JT; Bishop C; Hayes PJ; Muir L; Pinder CL; Cizmeci D; King D; Aldon Y et al.
Source: Self-asserted source
Deniz Cizmeci via Europe PubMed Central

Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection.

Scientific reports
2016-08 | Journal article
DOI: 10.1038/srep30861
PMID: 27484700
PMC: PMC4971488
Contributors: Cizmeci D; Dempster EL; Champion OL; Wagley S; Akman OE; Prior JL; Soyer OS; Mill J; Titball RW
Source: Self-asserted source
Deniz Cizmeci via Europe PubMed Central

Regulatory networks and complex interactions between the insulin and angiotensin II signalling systems: models and implications for hypertension and diabetes.

PloS one
2013-12 | Journal article
DOI: 10.1371/journal.pone.0083640
PMID: 24400038
PMC: PMC3882141
Contributors: Cizmeci D; Arkun Y
Source: Self-asserted source
Deniz Cizmeci via Europe PubMed Central
How many people are using ORCID?