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Scopus Author ID: 56362554200

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Employment (2)

Ecole Polytechnique Federale de Lausanne: Geneva, Geneve, CH

Group Leader (Blue Brain Project)
Employment
Source: Self-asserted source
Daniel Keller

EPFL - École Polytechnique Fédérale de Lausanne: Lausanne, CH

2008 to 2024
Employment
Source: check_circle
ORCID Integration at EPFL

Education and qualifications (1)

University of California: San Diego, Ca, US

2008-05-31 | PhD (Neuroscience)
Education
Source: Self-asserted source
Daniel Keller

Works (43)

Structural and molecular characterization of astrocyte and vasculature connectivity in the mouse hippocampus and cortex

GLIA
2024 | Journal article
DOI: 10.1002/glia.24594
EID:

2-s2.0-85198499825

Part of ISSN: 10981136 08941491
Contributors: Lorin, C.; Guiet, R.; Chiaruttini, N.; Ambrosini, G.; Boci, E.; Abdellah, M.; Markram, H.; Keller, D.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling

bioRxiv
2024 | Other
DOI: 10.1101/2024.03.11.584388
EID:

2-s2.0-85192534152

Part of ISSN: 26928205
Contributors: Abdellah, M.; Foni, A.; Cantero, J.J.G.; Guerrero, N.R.; Boci, E.; Fleury, A.; Coggan, J.S.; Keller, D.; Planas, J.; Courcol, J.-D. et al.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier

Breakdown and repair of the aging brain metabolic system

bioRxiv
2023 | Other
DOI: 10.1101/2023.08.30.555341
EID:

2-s2.0-85183801053

Part of ISSN: 26928205
Contributors: Shichkova, P.; Coggan, J.S.; Kanari, L.; Boci, E.; Favreau, C.; Antonel, S.M.; Keller, D.; Markram, H.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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Cell-type-specific densities in mouse somatosensory cortex derived from scRNA-seq and in situ RNA hybridization

Frontiers in Neuroanatomy
2023 | Journal article
DOI: 10.3389/fnana.2023.1118170
EID:

2-s2.0-85151638348

Part of ISSN: 16625129
Contributors: Keller, D.; Verasztó, C.; Markram, H.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier

Combining hypothesis-and data-driven neuroscience modeling in FAIR workflow

eLife
2022 | Journal article
DOI: 10.7554/elife.69013
EID:

2-s2.0-85134361130

Part of ISSN: 2050084X
Contributors: Eriksson, O.; Bhalla, U.S.; Blackwell, K.T.; Crook, S.M.; Keller, D.; Kramer, A.; Linne, M.-L.; Saudargienė, A.; Wade, R.C.; Kotaleski, J.H.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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Representing stimulus information in an energy metabolism pathway

Journal of Theoretical Biology
2022 | Journal article
DOI: 10.1016/j.jtbi.2022.111090
EID:

2-s2.0-85126269417

Part of ISSN: 10958541 00225193
Contributors: Coggan, J.S.; Keller, D.; Markram, H.; Schürmann, F.; Magistretti, P.J.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience

bioRxiv
2022 | Other
DOI: 10.1101/2022.07.27.501675
EID:

2-s2.0-85140740918

Part of ISSN: 26928205
Contributors: Abdellah, M.; Cantero, J.J.G.; Guerrero, N.R.; Foni, A.; Coggan, J.S.; Calì, C.; Agus, M.; Zisis, E.; Keller, D.; Hadwiger, M. et al.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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A Machine-Generated View of the Role of Blood Glucose Levels in the Severity of COVID-19

Frontiers in Public Health
2021 | Journal article
DOI: 10.3389/fpubh.2021.695139
EID:

2-s2.0-85112258036

Part of ISSN: 22962565
Contributors: Logette, E.; Lorin, C.; Favreau, C.; Oshurko, E.; Coggan, J.S.; Casalegno, F.; Sy, M.F.; Monney, C.; Bertschy, M.; Delattre, E. et al.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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A method to estimate the cellular composition of the mouse brain from heterogeneous datasets

bioRxiv
2021 | Other
DOI: 10.1101/2021.11.20.469384
EID:

2-s2.0-85140855826

Part of ISSN: 26928205
Contributors: Rodarie, D.; Verasztó, C.; Roussel, Y.; Reimann, M.; Keller, D.; Ramaswamy, S.; Markram, H.; Gewaltig, M.-O.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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A Standardized Brain Molecular Atlas: A Resource for Systems Modeling and Simulation

Frontiers in Molecular Neuroscience
2021 | Journal article
DOI: 10.3389/fnmol.2021.604559
EID:

2-s2.0-85120440293

Part of ISSN: 16625099
Contributors: Shichkova, P.; Coggan, J.S.; Markram, H.; Keller, D.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Architecture of the neuro-glia-vascular system

bioRxiv
2021 | Other
DOI: 10.1101/2021.01.19.427241
EID:

2-s2.0-85100952834

Part of ISSN: 26928205
Contributors: Eleftherios, Z.; Daniel, K.; Lida, K.; Alexis, A.; Michael, G.; Thomas, D.; Benoît, C.; Alessandro, F.; Marwan, A.; Corrado, C. et al.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Digital reconstruction of the neuro-glia-vascular architecture

Cerebral Cortex
2021 | Journal article
DOI: 10.1093/cercor/bhab254
EID:

2-s2.0-85120831335

Part of ISSN: 14602199 10473211
Contributors: Zisis, E.; Keller, D.; Kanari, L.; Arnaudon, A.; Gevaert, M.; Delemontex, T.; Coste, B.; Foni, A.; Abdellah, M.; Cali, C. et al.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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Mapping of morpho-electric features to molecular identity of cortical inhibitory neurons

bioRxiv
2021 | Other
DOI: 10.1101/2021.11.24.469815
EID:

2-s2.0-85121532964

Part of ISSN: 26928205
Contributors: Roussel, Y.; Verasztó, C.; Rodarie, D.; Damart, T.; Reimann, M.; Ramaswamy, S.; Markram, H.; Keller, D.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Metaball skinning of synthetic astroglial morphologies into realistic mesh models for visual analytics and in silico simulations

Bioinformatics
2021 | Journal article
DOI: 10.1093/bioinformatics/btab280
EID:

2-s2.0-85111996965

Part of ISSN: 14602059 13674803
Contributors: Abdellah, M.; Foni, A.; Zisis, E.; Guerrero, N.R.; Lapere, S.; Coggan, J.S.; Keller, D.; Markram, H.; Schürmann, F.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas

Frontiers in Neuroinformatics
2021 | Journal article
DOI: 10.3389/fninf.2021.691918
EID:

2-s2.0-85112702478

Part of ISSN: 16625196
Contributors: Krepl, J.; Casalegno, F.; Delattre, E.; Erö, C.; Lu, H.; Keller, D.; Rodarie, D.; Markram, H.; Schürmann, F.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier

Elevated Blood Glucose Levels as a Primary Risk Factor for the Severity of COVID-19

2021-05 | Preprint
DOI: 10.1101/2021.04.29.21256294
PPR: PPR319053
Contributors: Logette E; Lorin C; Favreau C; Oshurko E; Coggan JS; Casalegno F; Sy MF; Monney C; Bertschy M; Delattre E et al.
Source: Self-asserted source
Daniel Keller via Europe PubMed Central

Excitation states of metabolic networks predict dose-response fingerprinting and ligand pulse phase signalling

Journal of Theoretical Biology
2020 | Journal article
DOI: 10.1016/j.jtbi.2019.110123
EID:

2-s2.0-85076901688

Part of ISSN: 10958541 00225193
Contributors: Coggan, J.S.; Keller, D.; Markram, H.; Schürmann, F.; Magistretti, P.J.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis

Bioinformatics
2020 | Journal article
DOI: 10.1093/BIOINFORMATICS/BTAA461
EID:

2-s2.0-85087928182

Part of ISSN: 14602059 13674803
Contributors: Abdellah, M.; Guerrero, N.R.; Lapere, S.; Coggan, J.S.; Keller, D.; Coste, B.; Dagar, S.; Courcol, J.-D.; Markram, H.; Schurmann, F.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience

2020-11-18 | Preprint
DOI: 10.1101/2020.11.17.385203
Contributors: João P.G. Santos; Kadri Pajo; Daniel Trpevski; Andrey Stepaniuk; Olivia Eriksson; Anu G. Nair; Daniel Keller; Jeanette Hellgren Kotaleski; Andrei Kramer
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Crossref
grade
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A Derived Positional Mapping of Inhibitory Subtypes in the Somatosensory Cortex

Frontiers in Neuroanatomy
2019 | Journal article
DOI: 10.3389/fnana.2019.00078
EID:

2-s2.0-85072217495

Part of ISSN: 16625129
Contributors: Keller, D.; Meystre, J.; Veettil, R.V.; Burri, O.; Guiet, R.; Schürmann, F.; Markram, H.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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Cellular, synaptic and network effects of acetylcholine in the neocortex

Frontiers in Neural Circuits
2019 | Journal article
DOI: 10.3389/fncir.2019.00024
EID:

2-s2.0-85064198739

Part of ISSN: 16625110
Contributors: Colangelo, C.; Shichkova, P.; Keller, D.; Markram, H.; Ramaswamy, S.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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Corrigendum: A cell atlas for the mouse brain (Frontiers in neuroinformatics, (2018), 12, 10.3389/fninf.2018.00084)

Frontiers in Neuroinformatics
2019 | Journal article
DOI: 10.3389/fninf.2019.00007
EID:

2-s2.0-85064270525

Part of ISSN: 16625196
Contributors: Erö, C.; Gewaltig, M.-O.; Keller, D.; Markram, H.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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A cell atlas for the mouse brain

Frontiers in Neuroinformatics
2018 | Journal article
DOI: 10.3389/fninf.2018.00084
EID:

2-s2.0-85058993944

Part of ISSN: 16625196
Contributors: Erö, C.; Gewaltig, M.-O.; Keller, D.; Markram, H.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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A process for digitizing and simulating biologically realistic oligocellular networks demonstrated for the neuro-Glio-Vascular ensemble

Frontiers in Neuroscience
2018 | Journal article
DOI: 10.3389/fnins.2018.00664
EID:

2-s2.0-85054012828

Part of ISSN: 1662453X 16624548
Contributors: Coggan, J.S.; Cali, C.; Keller, D.; Agus, M.; Boges, D.; Abdellah, M.; Kare, K.; Lehväslaiho, H.; Eilemann, S.; Jolivet, R.B. et al.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier

Basal ganglia neuromodulation over multiple temporal and structural scales—simulations of direct pathway MSNs investigate the fast onset of dopaminergic effects and predict the role of Kv4.2

Frontiers in Neural Circuits
2018 | Journal article
DOI: 10.3389/fncir.2018.00003
EID:

2-s2.0-85043599838

Part of ISSN: 16625110
Contributors: Lindroos, R.; Dorst, M.C.; Du, K.; Filipović, M.; Keller, D.; Ketzef, M.; Kozlov, A.K.; Kumar, A.; Lindahl, M.; Nair, A.G. et al.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Cell densities in the mouse brain: A systematic review

Frontiers in Neuroanatomy
2018 | Journal article
DOI: 10.3389/fnana.2018.00083
EID:

2-s2.0-85057099663

Part of ISSN: 16625129
Contributors: Keller, D.; Erö, C.; Markram, H.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Norepinephrine stimulates glycogenolysis in astrocytes to fuel neurons with lactate

PLoS Computational Biology
2018 | Journal article
DOI: 10.1371/journal.pcbi.1006392
EID:

2-s2.0-85052867874

Part of ISSN: 15537358 1553734X
Contributors: Coggan, J.S.; Keller, D.; Calì, C.; Lehväslaiho, H.; Markram, H.; Schürmann, F.; Magistretti, P.J.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Modeling the metabolic response of astrocytes to neuronal activity

2017 | Other
SOURCE-WORK-ID: BASE:1c8bca44837c15643c1420840b077daf63123298505fcc809d2ef4071e2f52a0
Contributors: Coggan, J.; Keller, D.; Cal, C.; Lehvaslaiho, H.; Schurmann, F.; Markram, H.; Magistretti, P. J.
Source: Self-asserted source
Daniel Keller via BASE - Bielefeld Academic Search Engine

Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue

PLoS Computational Biology
2016 | Journal article
DOI: 10.1371/journal.pcbi.1005193
EID:

2-s2.0-84999673406

Part of ISSN: 15537358 1553734X
Contributors: Halnes, G.; Mäki-Marttunen, T.; Keller, D.; Pettersen, K.H.; Andreassen, O.A.; Einevoll, G.T.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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25th Annual Computational Neuroscience Meeting: CNS-2016.

BMC neuroscience
2016-08 | Journal article
DOI: 10.1186/s12868-016-0283-6
PMID: 27534393
PMC: PMC5001212
Source: Self-asserted source
Daniel Keller via Europe PubMed Central

An Exclusion Zone for Ca<sup>2+</sup> Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse

PLoS Computational Biology
2015 | Journal article
DOI: 10.1371/journal.pcbi.1004253
EID:

2-s2.0-84930607352

Part of ISSN: 15537358 1553734X
Contributors: Keller, D.; Babai, N.; Kochubey, O.; Han, Y.; Markram, H.; Schürmann, F.; Schneggenburger, R.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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Computational reconstitution of spine calcium transients from individual proteins

Frontiers in Synaptic Neuroscience
2015 | Journal article
DOI: 10.3389/fnsyn.2015.00017
EID:

2-s2.0-84949228408

Part of ISSN: 16633563
Contributors: Bartol, T.M.; Keller, D.X.; Kinney, J.P.; Bajaj, C.L.; Harris, K.M.; Sejnowski, T.J.; Kennedy, M.B.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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Network-timing-dependent plasticity

Frontiers in Cellular Neuroscience
2015 | Journal article
DOI: 10.3389/fncel.2015.00220
EID:

2-s2.0-84935884428

Part of ISSN: 16625102
Contributors: Delattre, V.; Keller, D.; Perich, M.; Markram, H.; Muller, E.B.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Reconstruction and Simulation of Neocortical Microcircuitry

Cell
2015 | Journal article
DOI: 10.1016/j.cell.2015.09.029
EID:

2-s2.0-84943612722

Part of ISSN: 10974172 00928674
Contributors: Markram, H.; Muller, E.; Ramaswamy, S.; Reimann, M.W.; Abdellah, M.; Sanchez, C.A.; Ailamaki, A.; Alonso-Nanclares, L.; Antille, N.; Arsever, S. et al.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
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The neocortical microcircuit collaboration portal: A resource for rat somatosensory cortex

Frontiers in Neural Circuits
2015 | Journal article
DOI: 10.3389/fncir.2015.00044
EID:

2-s2.0-84943608097

Part of ISSN: 16625110
Contributors: Ramaswamy, S.; Courcol, J.-D.; Abdellah, M.; Adaszewski, S.R.; Antille, N.; Arsever, S.; Atenekeng, G.; Bilgili, A.; Brukau, Y.; Chalimourda, A. et al.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier

Can ionic diffusion have an effect on extracellular potentials?

BMC neuroscience
2015-01 | Journal article
DOI: 10.1186/1471-2202-16-s1-p68
PMC: PMC4697464
Contributors: Halnes G; Mäki-Marttunen T; Pettersen K; Keller D; Andreassen O; Einevoll G
Source: Self-asserted source
Daniel Keller via Europe PubMed Central

An alien divalent ion reveals a major role for Ca<sup>2+</sup> buffering in controlling slow transmitter release

Journal of Neuroscience
2014 | Journal article
DOI: 10.1523/JNEUROSCI.1990-14.2014
EID:

2-s2.0-84907143445

Part of ISSN: 15292401 02706474
Contributors: Babai, N.; Kochubey, O.; Keller, D.; Schneggenburger, R.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction

2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010
2010 | Conference paper
DOI: 10.1145/1854776.1854838
EID:

2-s2.0-77958042740

Part of ISBN: 9781450304382
Contributors: Manninen, T.; Keller, D.X.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Activation of enzymatic cascades by calcium transients in reconstructed hippocampal dendritic spines

2008 | Book
CGN: K10Plus:1803207531
Contributors: Keller, Daniel
Source: Self-asserted source
Daniel Keller via GND Network

Calmodulin activation by calcium transients in the postsynaptic density of dendritic spines

PLoS ONE
2008 | Journal article
DOI: 10.1371/journal.pone.0002045
EID:

2-s2.0-44349158874

Part of ISSN: 19326203
Contributors: Keller, D.X.; Franks, K.M.; Bartol Jr., T.M.; Sejnowski, T.J.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Computational modeling of three-dimensional electrodiffusion in biological systems: Application to the node of Ranvier

Biophysical Journal
2008 | Journal article
DOI: 10.1529/biophysj.108.132167
EID:

2-s2.0-55549124558

Part of ISSN: 15420086 00063495
Contributors: Lopreore, C.L.; Bartol, T.M.; Coggan, J.S.; Keller, D.X.; Sosinsky, G.E.; Ellisman, M.H.; Sejnowski, T.J.
Source: Self-asserted source
Daniel Keller via Scopus - Elsevier
grade
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Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part I: Anatomy

Other
DOI: 10.7554/elife.99688
Contributors: Michael W. Reimann; Sirio Bolaños Puchet; Jean-Denis Courcol; Daniela Egas Santander; alexis arnaudon; Benoît Coste; Fabien Delalondre; Thomas Delemontex; Adrien Devresse; Hugo Dictus et al.
Source: Self-asserted source
Daniel Keller via Crossref Metadata Search
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Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part II: Physiology and Experimentation

Other | Author
DOI: 10.1101/2023.05.17.541168
Contributors: James Isbister; András Ecker; Christoph Pokorny; Sirio Bolaños Puchet; Daniela Egas Santander; alexis arnaudon; Omar Awile; Natali Barros Zulaica; Jorge Blanco Alonso; Elvis Boci et al.
Source: Self-asserted source
Daniel Keller via Crossref Metadata Search
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