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Works (13)

Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)

Molecular Phylogenetics and Evolution
2025-04 | Journal article
DOI: 10.1016/j.ympev.2025.108286
Contributors: Alden C. Dirks; Andrew S. Methven; Andrew N. Miller; Michelle Orozco-Quime; Sundy Maurice; Gregory Bonito; Judson Van Wyk; Steven Ahrendt; Alan Kuo; William Andreopoulos et al.
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Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses

Communications Biology
2024-09-12 | Journal article
DOI: 10.1038/s42003-024-06681-w
Contributors: Andrei S. Steindorff; Maria Victoria Aguilar-Pontes; Aaron J. Robinson; Bill Andreopoulos; Kurt LaButti; Alan Kuo; Stephen Mondo; Robert Riley; Robert Otillar; Sajeet Haridas et al.
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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation

Journal of Fungi
2024-07-22 | Journal article
DOI: 10.3390/jof10070507
Contributors: Sebastian Theobald; Tammi C. Vesth; Elena Geib; Jane L. Nybo; Jens C. Frisvad; Thomas O. Larsen; Alan Kuo; Kurt LaButti; Ellen K. Lyhne; Inge Kjærbølling et al.
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The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses

Current Biology
2023-12 | Journal article
DOI: 10.1016/j.cub.2023.10.009
Contributors: Jackie L. Collier; Joshua S. Rest; Lucie Gallot-Lavallée; Erik Lavington; Alan Kuo; Jerry Jenkins; Chris Plott; Jasmyn Pangilinan; Chris Daum; Igor V. Grigoriev et al.
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Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi

Communications Biology
2023-09-18 | Journal article
DOI: 10.1038/s42003-023-05299-8
Contributors: Reid Longley; Aaron Robinson; Julian A. Liber; Abigail E. Bryson; Demosthenes P. Morales; Kurt LaButti; Robert Riley; Stephen J. Mondo; Alan Kuo; Yuko Yoshinaga et al.
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Herpes-like viral elements and universal subtelomeric ribosomal RNA genes in a chromosome-scale thraustochytrid genome assembly

2023-06-15 | Preprint
DOI: 10.1101/2023.06.15.545109
Contributors: Jackie L. Collier; Joshua S. Rest; Lucie Gallot-Lavallée; Erik Lavington; Alan Kuo; Jerry Jenkins; Chris Plott; Jasmyn Pangilinan; Chris Daum; Igor V. Grigoriev et al.
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Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi

GENETICS
2023-05-26 | Journal article
DOI: 10.1093/genetics/iyad069
Contributors: Yi-Hong Ke; Sara Branco; Anna L Bazzicalupo; Nhu H Nguyen; Hui-Ling Liao; Peter Kennedy; Thomas D Bruns; Alan Kuo; Kurt LaButti; Kerrie Barry et al.
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Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms

New Phytologist
2022-07 | Journal article
DOI: 10.1111/nph.18143
Contributors: Annie Lebreton; Nianwu Tang; Alan Kuo; Kurt LaButti; William Andreopoulos; Elodie Drula; Shingo Miyauchi; Kerrie Barry; Alicia Clum; Anna Lipzen et al.
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Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

New Phytologist
2022-03 | Journal article
DOI: 10.1111/nph.17892
Contributors: Brian Looney; Shingo Miyauchi; Emmanuelle Morin; Elodie Drula; Pierre Emmanuel Courty; Annegret Kohler; Alan Kuo; Kurt LaButti; Jasmyn Pangilinan; Anna Lipzen et al.
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Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

New Phytologist
2022-02 | Journal article
DOI: 10.1111/nph.17858
Contributors: Gang Wu; Shingo Miyauchi; Emmanuelle Morin; Alan Kuo; Elodie Drula; Torda Varga; Annegret Kohler; Bang Feng; Yang Cao; Anna Lipzen et al.
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Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related microalgae

2021-08-02 | Other
DOI: 10.1101/2021.07.31.454568
Contributors: Richard G. Dorrell; Alan Kuo; Zoltan Füssy; Elisabeth Richardson; Asaf Salamov; Nikola Zarevski; Nastasia J. Freyria; Federico M. Ibarbalz; Jerry Jenkins; Juan Jose Pierella Karlusich et al.
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Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi

New Phytologist
2021-04 | Journal article
DOI: 10.1111/nph.17160
Contributors: Lotus A. Lofgren; Nhu H. Nguyen; Rytas Vilgalys; Joske Ruytinx; Hui‐Ling Liao; Sara Branco; Alan Kuo; Kurt LaButti; Anna Lipzen; William Andreopoulos et al.
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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus

G3 Genes|Genomes|Genetics
2020-09-01 | Journal article
DOI: 10.1534/g3.120.401516
Contributors: Javier F Tabima; Ian A Trautman; Ying Chang; Yan Wang; Stephen Mondo; Alan Kuo; Asaf Salamov; Igor V Grigoriev; Jason E Stajich; Joseph W Spatafora
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Peer review (4 reviews for 2 publications/grants)

Review activity for BMC biology. (1)
Review activity for Communications biology. (3)
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