Personal information

Emails & domains

Verified email domains

Other IDs

ResearcherID: A-1832-2016

Activities

Collapse all

Employment (1)

Radboud University Medical Center: Nijmegen, NL

2008-08-15 to present | Staff Scientist /PhD (Medical BioSciences)
Employment
Source: Self-asserted source
Gert-Jan Bakker

Works (24)

1. Introduction - Background and Aims v1

2024-09-08 | Preprint
DOI: 10.17504/protocols.io.eq2lyw5mevx9/v1
Contributors: Gert-Jan Bakker; Mathias Hammer; Luis-Francisco Acevedo-Hueso; Sergiy V Avilov; Laszlo Barna; Sebastian Beer; Valeria Berno; Yann Cesbron; Orestis Faklaris; Nathalie Gaudreault et al.
Source: check_circle
Crossref

3. Data Generation - Systems with an Area Detector v1

2024-09-08 | Preprint
DOI: 10.17504/protocols.io.bp2l62eorgqe/v1
Contributors: Mathias Hammer; Britta Schroth-Diez; Luis-Francisco Acevedo-Hueso; Gert-Jan Bakker; Laszlo Barna; Sebastian Beer; Valeria Berno; Yann Cesbron; Orestis Faklaris; Nathalie Gaudreault et al.
Source: check_circle
Crossref

4. Data Generation - Systems with a Point Detector v1

2024-09-08 | Preprint
DOI: 10.17504/protocols.io.j8nlk8176l5r/v1
Contributors: Andre Zeug; Valeria Berno; Luis-Francisco Acevedo-Hueso; Gert-Jan Bakker; Mariana T Carvalho; Yann Cesbron; Orestis Faklaris; Ayse Aslihan Koksoy; Gabriel G Martins; David McFadden et al.
Source: check_circle
Crossref

5. Analysis - Characterization of the Photon Conversion Factor, Noise, and Dynamic Range v1

2024-09-08 | Preprint
DOI: 10.17504/protocols.io.rm7vzjew2lx1/v1
Contributors: David McFadden; Kees van der Oord; Luis-Francisco Acevedo-Hueso; Sergiy V Avilov; Gert-Jan Bakker; Ivan Belyaev; Valeria Berno; Mariana T Carvalho; Yann Cesbron; Catalin Chiritescu et al.
Source: check_circle
Crossref

Characterization of the Photon Conversion Factor, Noise, and Dynamic Range of Light Microscope Detection Systems v1

2024-09-08 | Preprint
DOI: 10.17504/protocols.io.14egn61pyl5d/v1
Contributors: David McFadden; Laszlo Barna; Luis-Francisco Acevedo-Hueso; Sergiy V Avilov; Gert-Jan Bakker; Sebastian Beer; Ivan Belyaev; Valeria Berno; Mariana T Carvalho; Yann Cesbron et al.
Source: check_circle
Crossref

Community-developed checklists for publishing images and image analyses

Nature Methods
2024-02 | Journal article
DOI: 10.1038/s41592-023-01987-9
Contributors: Christopher Schmied; Michael S. Nelson; Sergiy Avilov; Gert-Jan Bakker; Cristina Bertocchi; Johanna Bischof; Ulrike Boehm; Jan Brocher; Mariana T. Carvalho; Catalin Chiritescu et al.
Source: check_circle
Crossref

Approaches to Determine Nuclear Shape in Cells During Migration Through Collagen Matrices

Cell Migration in Three Dimensions
2023 | Book chapter
DOI: 10.1007/978-1-0716-2887-4_7
Part of ISBN: 9781071628867
Part of ISBN: 9781071628874
Part of ISSN: 1064-3745
Part of ISSN: 1940-6029
Contributors: Martin Svoren; Elena Camerini; Merijn van Erp; Feng Wei Yang; Gert-Jan Bakker; Katarina Wolf
Source: Self-asserted source
Gert-Jan Bakker

Multisite assessment of reproducibility in high‐content cell migration imaging data

Molecular Systems Biology
2023-06-12 | Journal article
DOI: 10.15252/msb.202211490
Contributors: Jianjiang Hu; Xavier Serra‐Picamal; Gert‐Jan Bakker; Marleen Van Troys; Sabina Winograd‐Katz; Nil Ege; Xiaowei Gong; Yuliia Didan; Inna Grosheva; Omer Polansky et al.
Source: check_circle
Crossref

Adenosine A2a Receptor Antagonism Restores Additive Cytotoxicity by Cytotoxic T Cells in Metabolically Perturbed Tumors

Cancer Immunology Research
2022-12-02 | Journal article
DOI: 10.1158/2326-6066.CIR-22-0113
Contributors: Jeroen Slaats; Esther Wagena; Daan Smits; Annemarie A. Berends; Ella Peters; Gert-Jan Bakker; Merijn van Erp; Bettina Weigelin; Gosse J. Adema; Peter Friedl
Source: check_circle
Crossref

Actomyosin contractility requirements and reciprocal cell–tissue mechanics for cancer cell invasion through collagen-based channels

The European Physical Journal E
2022-05 | Journal article
DOI: 10.1140/epje/s10189-022-00182-6
Part of ISSN: 1292-8941
Part of ISSN: 1292-895X
Source: Self-asserted source
Gert-Jan Bakker
grade
Preferred source (of 2)‎

Intravital deep-tumor single-beam 3-photon, 4-photon, and harmonic microscopy

eLife
2022-02-15 | Journal article
DOI: 10.7554/elife.63776
Part of ISSN: 2050-084X
Source: Self-asserted source
Gert-Jan Bakker
grade
Preferred source (of 2)‎

QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Journal of Microscopy
2021-10 | Journal article
DOI: 10.1111/jmi.13041
Part of ISSN: 0022-2720
Part of ISSN: 1365-2818
Source: Self-asserted source
Gert-Jan Bakker

Cell-cell adhesion and 3D matrix confinement determine jamming transitions in breast cancer invasion.

Nature cell biology
2020-08 | Journal article
DOI: 10.1038/s41556-020-0552-6
PMID: 32839548
Contributors: Ilina O; Gritsenko PG; Syga S; Lippoldt J; La Porta CAM; Chepizhko O; Grosser S; Vullings M; Bakker GJ; Starruß J et al.
Source: Self-asserted source
Gert-Jan Bakker via Europe PubMed Central
grade
Preferred source (of 2)‎

The tumour microenvironment shapes dendritic cell plasticity in a human organotypic melanoma culture

Nature Communications
2020-06-02 | Journal article
DOI: 10.1038/s41467-020-16583-0
Part of ISSN: 2041-1723
Source: Self-asserted source
Gert-Jan Bakker
grade
Preferred source (of 2)‎

Community standards for open cell migration data

GigaScience
2020-05-01 | Journal article
DOI: 10.1093/gigascience/giaa041
Part of ISSN: 2047-217X
Source: Self-asserted source
Gert-Jan Bakker
grade
Preferred source (of 2)‎

Single cell-based automated quantification of therapy responses of invasive cancer spheroids in organotypic 3D culture

Methods
2017 | Journal article
DOI: 10.1016/j.ymeth.2017.07.015
WOSUID:

WOS:000411424000014
Contributors: Veelken, Cornelia; Bakker, Gert-Jan; Drell, David; Friedl, Peter
Source: Self-asserted source
Gert-Jan Bakker via ResearcherID
grade
Preferred source (of 2)‎

Changes in membrane sphingolipid composition modulate dynamics and adhesion of integrin nanoclusters

Scientific Reports
2016 | Journal article
DOI: 10.1038/srep20693
WOSUID:

WOS:000369932700001
Contributors: Eich, Christina; Manzo, Carlo; de Keijzer, Sandra; Bakker, Gert-Jan; Reinieren-Beeren, Inge; Garcia-Parajo, Maria F.; Cambi, Alessandra
Source: Self-asserted source
Gert-Jan Bakker via ResearcherID

Third harmonic generation microscopy of cells and tissue organization

Journal of Cell Science
2016 | Journal article
DOI: 10.1242/jcs.152272
WOSUID:

WOS:000369504000002
Contributors: Weigelin, Bettina; Bakker, Gert-Jan; Friedl, Peter
Source: Self-asserted source
Gert-Jan Bakker via ResearcherID

Directing collagen fibers using counter-rotating cone extrusion

Acta Biomaterialia
2015 | Journal article
DOI: 10.1016/j.actbio.2014.10.012
WOSUID:

WOS:000348686100012
Contributors: Hoogenkamp, Henk R.; Bakker, Gert-Jan; Wolf, Louis; Suurs, Patricia; Dunnewind, Bertus; Barbut, Shai; Friedl, Peter; van Kuppevelt, Toin H.; Daamen, Willeke F.
Source: Self-asserted source
Gert-Jan Bakker via ResearcherID

FLUORESCENCE LIFETIME MICROSCOPY OF TUMOR CELL INVASION, DRUG DELIVERY, AND CYTOTOXICITY

Imaging and Spectroscopic Analysis of Living Cells: Optical and Spectroscopic Techniques
2012 | Journal article
DOI: 10.1016/B978-0-12-391857-4.00005-7
WOSUID:

WOS:000303896400005
Contributors: Bakker, Gert-Jan; Andresen, Volker; Hoffman, Robert M.; Friedl, Peter; Conn, PM
Source: Self-asserted source
Gert-Jan Bakker via ResearcherID

Intravital third harmonic generation microscopy of collective melanoma cell invasion

Intravital
2012 | Journal article
SOURCE-WORK-ID:

0104160953730-7
Contributors: Weigelin, Bettina; Bakker, Gert Jan; Friedl, Peter
Source: Self-asserted source
Gert-Jan Bakker via ResearcherID

Lateral mobility of individual integrin nanoclusters orchestrates the onset for leukocyte adhesion

Proceedings of the National Academy of Sciences of the United States of America
2012 | Journal article
DOI: 10.1073/pnas.1116425109
WOSUID:

WOS:000302164200037
Contributors: Jan Bakker, Gert; Eich, Christina; Torreno-Pina, Juan A.; Diez-Ahedo, Ruth; Perez-Samper, Gemma; van Zanten, Thomas S.; Figdor, Carl G.; Cambi, Alessandra; Garcia-Parajo, Maria F.
Source: Self-asserted source
Gert-Jan Bakker via ResearcherID

Two-photon laser-generated microtracks in 3D collagen lattices: principles of MMP-dependent and -independent collective cancer cell invasion

Physical Biology
2011 | Journal article
DOI: 10.1088/1478-3975/8/1/015010
WOSUID:

WOS:000287044600013
Contributors: Ilina, Olga; Bakker, Gert-Jan; Vasaturo, Angela; Hofmann, Robert M.; Friedl, Peter
Source: Self-asserted source
Gert-Jan Bakker via ResearcherID

Dynamic Re-organization of Individual Adhesion Nanoclusters in Living Cells by Ligand-Patterned Surfaces

Small
2009 | Journal article
DOI: 10.1002/smll.200801699
WOSUID:

WOS:000267317300003
Contributors: Diez-Ahedo, Ruth; Normanno, Davide; Esteban, Olga; Bakker, Gert-Jan; Figdor, Carl G.; Cambi, Alessandra; Garcia-Parajo, Maria F.
Source: Self-asserted source
Gert-Jan Bakker via ResearcherID

Peer review (2 reviews for 1 publication/grant)

Review activity for JoVE. (2)
How many people are using ORCID?