Personal information

bioinformatics genomics

Biography

A bioinformatics investigator in computational genomics

Activities

Employment (3)

Albert Einstein College of Medicine: Bronx, NY, US

2007-09-01 to present | Assistant/Associate Professor/Professor (Neurology, Genetics, Neuroscience)
Employment
Source: Self-asserted source
Deyou Zheng

Yale University: New Haven, CT, US

2003-10-01 to 2007-08-30 | Postdoc (Molecular Biophysics & Biochemistry)
Employment
Source: Self-asserted source
Deyou Zheng

Rutgers University New Brunswick: New Brunswick, NJ, US

1998-09-01 to 2003-09-30 | Graduate Student (Biochemistray)
Employment
Source: Self-asserted source
Deyou Zheng

Education and qualifications (3)

Rutgers University New Brunswick: New Brunswick, NJ, US

1998-09-01 to 2003-07-01 | Ph.D. (Computational Molecular Biology)
Education
Source: Self-asserted source
Deyou Zheng

Auburn University: Auburn, AL, US

1996-03-01 to 1998-06-01 | M.S. (Pathobiology)
Education
Source: Self-asserted source
Deyou Zheng

China Agricultural University: Beijing, CN

1988-09-01 to 1992-07-10 | B.S. (Microbiology)
Education
Source: Self-asserted source
Deyou Zheng

Professional activities (1)

Faculty Opinions: London, GB

2002-12-03 to present | Faculty Member
Invited position
Source: check_circle
Faculty Opinions

Funding (2)

Deciphering the roles of Nfatc1 in developmental coronary angiogenesis

2016-06-01 to 2020-05-31 | Grant
National Heart, Lung, and Blood Institute (Bethesda, US)
GRANT_NUMBER: 1R01HL133120-01
Source: Self-asserted source
Deyou Zheng via DimensionsWizard

Novel regulatory network involving non-coding role of an ASD candidate gene PTEN

2012-09-19 to 2014-08-31 | Grant
National Institute of Mental Health (Bethesda, US)
GRANT_NUMBER: 5R21MH099452-02
GRANT_NUMBER: 5R21MH099452-02
Source: Self-asserted source
Deyou Zheng via DimensionsWizard

Works (50 of 177)

Items per page:
Page 1 of 4

Six3 and Six6 jointly control diverse target genes in multiple cell populations over developmental trajectories of mouse embryonic retinal progenitor cells

PLOS ONE
2024-10-24 | Journal article
Contributors: Alexander Ferrena; Tudor C. Badea; Xusheng Zhang; Rupendra Shrestha; Deyou Zheng; Wei Liu
Source: check_circle
Crossref

H2AK119ub dynamics controls hair follicle stem cell quiescence

2024-10-11 | Preprint
Contributors: Pooja Flora; Meng Yen Li; Yudong Zhou; Maria Mercédes; Xiang Yu Zheng; Phillip M. Galbo, Jr.; Deyou Zheng; Elena Ezhkova
Source: check_circle
Crossref

scDAPP: a comprehensive single-cell transcriptomics analysis pipeline optimized for cross-group comparison

NAR Genomics and Bioinformatics
2024-09-28 | Journal article
Contributors: Alexander Ferrena; Xiang Yu Zheng; Kevyn Jackson; Bang Hoang; Bernice E Morrow; Deyou Zheng
Source: check_circle
Crossref

Molecular and network disruptions in neurodevelopment uncovered by single cell transcriptomics analysis of CHD8 heterozygous cerebral organoids

Heliyon
2024-07 | Journal article
Contributors: Maider Astorkia; Yang Liu; Erika M. Pedrosa; Herbert M. Lachman; Deyou Zheng
Source: check_circle
Crossref

Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity

eLife
2024-06-18 | Journal article
Contributors: Zhixin Jing; Phillip Galbo; Luis Ovando; Megan Demouth; Skylar Welte; Rosa Park; Kartik Chandran; Yinghao Wu; Thomas MacCarthy; Deyou Zheng et al.
Source: check_circle
Crossref

Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity

eLife
2024-06-18 | Journal article
Contributors: Zhixin Jing; Phillip Galbo; Luis Ovando; Megan Demouth; Skylar Welte; Rosa Park; Kartik Chandran; Yinghao Wu; Thomas MacCarthy; Deyou Zheng et al.
Source: check_circle
Crossref

Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity

2024-06-06 | Preprint
Contributors: Zhixin Jing; Phillip Galbo; Luis Ovando; Megan Demouth; Skylar Welte; Rosa Park; Kartik Chandran; Yinghao Wu; Thomas MacCarthy; Deyou Zheng et al.
Source: check_circle
Crossref

scDAPP: a comprehensive single-cell transcriptomics analysis pipeline optimized for cross-group comparison

2024-05-09 | Preprint
Contributors: Alexander Ferrena; Xiang Yu Zheng; Kevyn Jackson; Bang Hoang; Bernice Morrow; Deyou Zheng
Source: check_circle
Crossref

Metacell-based differential expression analysis identifies cell type specific temporal gene response programs in COVID-19 patient PBMCs

npj Systems Biology and Applications
2024-04-05 | Journal article
Contributors: Kevin O’Leary; Deyou Zheng
Source: check_circle
Crossref

Facilitate integrated analysis of single cell multiomic data by binarizing gene expression values

2024-02-27 | Preprint
Contributors: Rohan Misra; Alexander Ferrena; Deyou Zheng
Source: check_circle
Crossref

Tenascin-C expressing touch dome keratinocytes exhibit characteristics of all epidermal lineages

Science Advances
2024-01-19 | Journal article
Contributors: Minh Binh Nguyen; Pooja Flora; Meagan C. Branch; Madison Weber; Xiang Yu Zheng; Unnikrishnan Sivan; Simon Joost; Karl Annusver; Deyou Zheng; Maria Kasper et al.
Source: check_circle
Crossref

Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity

2023-09-28 | Preprint
Contributors: Zhixin Jing; Phillip Galbo; Luis Ovando; Megan Demouth; Skylar Welte; Rosa Park; Kartik Chandran; Yinghao Wu; Thomas MacCarthy; Deyou Zheng et al.
Source: check_circle
Crossref

Molecular and network disruptions in neurodevelopment uncovered by single cell transcriptomics analysis ofCHD8heterozygous cerebral organoids

2023-09-27 | Preprint
Contributors: Maider Astorkia; Yang Liu; Erika M. Pedrosa; Herbert M. Lachman; Deyou Zheng
Source: check_circle
Crossref

CHARGE syndrome-associated CHD7 acts at ISL1-regulated enhancers to modulate second heart field gene expression

Cardiovascular Research
2023-09-05 | Journal article
Contributors: Athanasia Stathopoulou; Ping Wang; Charlotte Thellier; Robert G Kelly; Deyou Zheng; Peter J Scambler
Source: check_circle
Crossref

Data from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Data from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Data from Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

2023-03-31 | Preprint
Contributors: Phillip M. Galbo; Xingxing Zang; Deyou Zheng
Source: check_circle
Crossref

Data from Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

2023-03-31 | Preprint
Contributors: Phillip M. Galbo; Xingxing Zang; Deyou Zheng
Source: check_circle
Crossref

Supplementary Data from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Data from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Data from Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

2023-03-31 | Preprint
Contributors: Phillip M. Galbo; Xingxing Zang; Deyou Zheng
Source: check_circle
Crossref

Supplementary Data from Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

2023-03-31 | Preprint
Contributors: Phillip M. Galbo; Xingxing Zang; Deyou Zheng
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Table from Functional Analysis of <i>MET</i> Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

2023-03-31 | Preprint
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Supplementary Tables from Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

2023-03-31 | Preprint
Contributors: Phillip M. Galbo; Xingxing Zang; Deyou Zheng
Source: check_circle
Crossref

Supplementary Tables from Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

2023-03-31 | Preprint
Contributors: Phillip M. Galbo; Xingxing Zang; Deyou Zheng
Source: check_circle
Crossref

Single-cell transcriptomics uncovers a non-autonomous Tbx1-dependent genetic program controlling cardiac neural crest cell development

Nature Communications
2023-03-21 | Journal article
Contributors: Christopher De Bono; Yang Liu; Alexander Ferrena; Aneesa Valentine; Deyou Zheng; Bernice E. Morrow
Source: check_circle
Crossref

Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity

2023-02-15 | Preprint
Contributors: Zhixin Jing; Phillip Galbo; Luis Ovando; Megan Demouth; Skylar Welte; Rosa Park; Kartik Chandran; Yinghao Wu; Thomas MacCarthy; Deyou Zheng et al.
Source: check_circle
Crossref

Characterization of cell-cell communication in autistic brains with single-cell transcriptomes

Journal of Neurodevelopmental Disorders
2022-12 | Journal article
Contributors: Maider Astorkia; Herbert M. Lachman; Deyou Zheng
Source: check_circle
Crossref

A glycan-based approach to cell characterization and isolation: Hematopoiesis as a paradigm

Journal of Experimental Medicine
2022-11-07 | Journal article
Contributors: Richard T. Piszczatowski; Emily Schwenger; Sriram Sundaravel; Catarina M. Stein; Yang Liu; Pamela Stanley; Amit Verma; Deyou Zheng; Ronald D. Seidel; Steven C. Almo et al.
Source: check_circle
Crossref

HSMotifDiscover: identification of motifs in sequences composed of non-single-letter elements

Bioinformatics
2022-08-10 | Journal article
Contributors: Vinod Kumar Singh; Rohan Misra; Steven C Almo; Ulrich G Steidl; Hannes E Bülow; Deyou Zheng; Tobias Marschall
Source: check_circle
Crossref

Single cell transcriptomics uncovers a non-autonomous Tbx1-dependent genetic program controlling cardiac neural crest cell deployment and progression

2022-08-02 | Preprint
Contributors: Christopher De Bono; Yang Liu; Alexander Ferrena; Aneesa Valentine; Deyou Zheng; Bernice E. Morrow
Source: check_circle
Crossref

The immune checkpoint B7x expands tumor-infiltrating Tregs and promotes resistance to anti-CTLA-4 therapy

Nature Communications
2022-05-06 | Journal article
Contributors: Peter John; Marc C. Pulanco; Phillip M. Galbo, Jr.; Yao Wei; Kim C. Ohaegbulam; Deyou Zheng; Xingxing Zang
Source: check_circle
Crossref

The immune checkpoint B7-H3 (CD276) regulates adipocyte progenitor metabolism and obesity development

Science Advances
2022-04-29 | Journal article
Contributors: Elodie Picarda; Phillip M. Galbo, Jr.; Haihong Zong; Meenu Rohini Rajan; Ville Wallenius; Deyou Zheng; Emma Börgeson; Rajat Singh; Jeffrey Pessin; Xingxing Zang
Source: check_circle
Crossref

The DNA dioxygenase Tet1 regulates H3K27 modification and embryonic stem cell biology independent of its catalytic activity

Nucleic Acids Research
2022-04-08 | Journal article
Contributors: Stephanie Chrysanthou; Qin Tang; Joun Lee; Samuel J Taylor; Yilin Zhao; Ulrich Steidl; Deyou Zheng; Meelad M Dawlaty
Source: check_circle
Crossref

Functional Analysis of MET Exon 14 Skipping Alteration in Cancer Invasion and Metastatic Dissemination

Cancer Research
2022-04-01 | Journal article
Contributors: Feng Wang; Yang Liu; Wanglong Qiu; Elaine Shum; Monica Feng; Dejian Zhao; Deyou Zheng; Alain Borczuk; Haiying Cheng; Balazs Halmos
Source: check_circle
Crossref

Tet-mediated DNA demethylation regulates specification of hematopoietic stem and progenitor cells during mammalian embryogenesis

Science Advances
2022-03-04 | Journal article
Contributors: Liyang Ma; Qin Tang; Xin Gao; Joun Lee; Run Lei; Masako Suzuki; Deyou Zheng; Keisuke Ito; Paul S. Frenette; Meelad M. Dawlaty
Source: check_circle
Crossref

Polycomb repressive complex 2 in adult hair follicle stem cells is dispensable for hair regeneration

PLOS Genetics
2021-12-14 | Journal article
Contributors: Pooja Flora; Vladimir Botchkarev; Meng-Yen Li; Phillip M. Galbo; Maider Astorkia; Deyou Zheng; Elena Ezhkova
Source: check_circle
Crossref

Transcription factor MEF2D is required for the maintenance of MLL-rearranged acute myeloid leukemia

Blood Advances
2021-11-23 | Journal article
Contributors: Lianzhong Zhao; Pengcheng Zhang; Phillip M. Galbo, Jr; Xinyue Zhou; Sajesan Aryal; Shaowei Qiu; Hao Zhang; Yang Zhou; Chunliang Li; Deyou Zheng et al.
Source: check_circle
Crossref

Characterization of Cell-cell Communication in Autistic Brains with Single Cell Transcriptomes

2021-10-15 | Other
Contributors: Maider Astorkia; Herbert M. Lachman; Deyou Zheng
Source: check_circle
Crossref

Perinatal angiogenesis from pre-existing coronary vessels via DLL4–NOTCH1 signalling

Nature Cell Biology
2021-09-08 | Journal article
Contributors: Pengfei Lu; Yidong Wang; Yang Liu; Yifeng Wang; Bingruo Wu; Deyou Zheng; Richard P. Harvey; Bin Zhou
Source: check_circle
Crossref

Robust integration of multiple single-cell RNA sequencing datasets using a single reference space

Nature Biotechnology
2021-07-25 | Journal article
Contributors: Yang Liu; Tao Wang; Bin Zhou; Deyou Zheng
Source: check_circle
Crossref
Items per page:
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Peer review (3 reviews for 1 publication/grant)

Review activity for Faculty Opinions (3)