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Works (19)

Recurrent evolution and selection shape structural diversity at the amylase locus

Nature
2024-10-17 | Journal article
DOI: 10.1038/s41586-024-07911-1
Contributors: Davide Bolognini; Alma Halgren; Runyang Nicolas Lou; Alessandro Raveane; Joana L. Rocha; Andrea Guarracino; Nicole Soranzo; Chen-Shan Chin; Erik Garrison; Peter H. Sudmant
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Crossref

Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes

Nature Methods
2023-08 | Journal article
DOI: 10.1038/s41592-023-01914-y
Contributors: Chen-Shan Chin; Sairam Behera; Asif Khalak; Fritz J. Sedlazeck; Peter H. Sudmant; Justin Wagner; Justin M. Zook
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Long-read whole-genome analysis of human single cells

Nature Communications
2023-08-24 | Journal article
DOI: 10.1038/s41467-023-40898-3
Contributors: Joanna Hård; Jeff E. Mold; Jesper Eisfeldt; Christian Tellgren-Roth; Susana Häggqvist; Ignas Bunikis; Orlando Contreras-Lopez; Chen-Shan Chin; Jessica Nordlund; Carl-Johan Rubin et al.
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Crossref

Multiscale Analysis of Pangenome Enables Improved Representation of Genomic Diversity For Repetitive And Clinically Relevant Genes

2022-08-06 | Preprint
DOI: 10.1101/2022.08.05.502980
Contributors: Chen-Shan Chin; Sairam Behera; Asif Khalak; Fritz J Sedlazeck; Justin Wagner; Justin M. Zook
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Crossref

A pan-genome approach to decipher variants in the highly complex tandem repeat of LPA

2022-06-09 | Preprint
DOI: 10.1101/2022.06.08.495395
Contributors: Chen-Shan Chin; Sairam Behera; Ginger A. Metcalf; Richard A. Gibbs; Eric Boerwinkle; Fritz J. Sedlazeck
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Crossref

Ten simple rules for large-scale data processing

PLOS Computational Biology
2022-02-10 | Journal article
DOI: 10.1371/journal.pcbi.1009757
Contributors: Arkarachai Fungtammasan; Alexandra Lee; Jaclyn Taroni; Kurt Wheeler; Chen-Shan Chin; Sean Davis; Casey Greene
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Crossref

Long-read whole genome analysis of human single cells

2021-04-13 | Preprint
DOI: 10.1101/2021.04.13.439527
Contributors: Joanna Hård; Jeff E Mold; Jesper Eisfeldt; Christian Tellgren-Roth; Susana Häggqvist; Ignas Bunikis; Orlando Contreras-Lopez; Chen-Shan Chin; Jessica Nordlund; Carl-Johan Rubin et al.
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Crossref

Human Genome Assembly in 100 Minutes

2019-07-17 | Other
DOI: 10.1101/705616
Contributors: Chen-Shan Chin; Asif Khalak
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Crossref

Heterogeneous resistance to quizartinib in acute myeloid leukemia revealed by single-cell analysis

Blood
2017-07-06 | Journal article
DOI: 10.1182/blood-2016-04-711820
Contributors: Catherine C. Smith; Amy Paguirigan; Grace R. Jeschke; Kimberly C. Lin; Evan Massi; Theodore Tarver; Chen-Shan Chin; Saurabh Asthana; Adam Olshen; Kevin J. Travers et al.
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Crossref

Phased diploid genome assembly with single-molecule real-time sequencing

Nature Methods
2016-12-17 | Journal article
DOI: 10.1038/nmeth.4035
Contributors: Chen-Shan Chin; Paul Peluso; Fritz J Sedlazeck; Maria Nattestad; Gregory T Concepcion; Alicia Clum; Christopher Dunn; Ronan O'Malley; Rosa Figueroa-Balderas; Abraham Morales-Cruz et al.
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Crossref

Ribbon: Visualizing complex genome alignments and structural variation

2016-10 | Other
DOI: 10.1101/082123
Contributors: Maria Nattestad; Chen-Shan Chin; Michael C Schatz
Source: Self-asserted source
Chen-Shan Chin via Crossref Metadata Search

Scaffolding of long read assemblies using long range contact information

2016-10 | Other
DOI: 10.1101/083964
Contributors: Jay Ghurye; Mihai Pop; Sergey Koren; Chen-Shan Chin
Source: Self-asserted source
Chen-Shan Chin via Crossref Metadata Search

Extending reference assembly models

Genome Biology
2015 | Journal article
DOI: 10.1186/s13059-015-0587-3
Contributors: Deanna M Church; Valerie A Schneider; Karyn Steinberg; Michael C Schatz; Aaron R Quinlan; Chen-Shan Chin; Paul A Kitts; Bronwen Aken; Gabor T Marth; Michael M Hoffman et al.
Source: Self-asserted source
Chen-Shan Chin via Crossref Metadata Search

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

Nature Biotechnology
2015-05 | Journal article
DOI: 10.1038/nbt.3238
Contributors: Konstantin Berlin; Sergey Koren; Chen-Shan Chin; James P Drake; Jane M Landolin; Adam M Phillippy
Source: Self-asserted source
Chen-Shan Chin via Crossref Metadata Search
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Long-read, whole-genome shotgun sequence data for five model organisms

Scientific Data
2014-11 | Journal article
DOI: 10.1038/sdata.2014.45
Contributors: Kristi E Kim; Paul Peluso; Primo Babayan; P. Jane Yeadon; Charles Yu; William W Fisher; Chen-Shan Chin; Nicole A Rapicavoli; David R Rank; Joachim Li et al.
Source: Self-asserted source
Chen-Shan Chin via Crossref Metadata Search

Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing

2014-08 | Other
DOI: 10.1101/008003
Contributors: Konstantin Berlin; Sergey Koren; Chen-Shan Chin; James Drake; Jane M Landolin; Adam M Phillippy
Source: Self-asserted source
Chen-Shan Chin via Crossref Metadata Search

Passive random walkers and riverlike networks on growing surfaces

Physical Review E
2002-08 | Journal article
DOI: 10.1103/physreve.66.021104
Contributors: Chen-Shan Chin
Source: Self-asserted source
Chen-Shan Chin via Crossref Metadata Search

Reconstructed rough growing interfaces: Ridge-line trapping of domain walls

Physical Review E
2001-08 | Journal article
DOI: 10.1103/physreve.64.031606
Contributors: Chen-Shan Chin; Marcel den Nijs
Source: Self-asserted source
Chen-Shan Chin via Crossref Metadata Search

Stationary-state skewness in two-dimensional Kardar-Parisi-Zhang type growth

Physical Review E
1999-03-01 | Journal article
DOI: 10.1103/physreve.59.2633
Contributors: Chen-Shan Chin; Marcel den Nijs
Source: Self-asserted source
Chen-Shan Chin via Crossref Metadata Search
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