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Keywords

Deep Learning,Bioinformatics, Computer Vision

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China

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Employment (1)

University of Washington: Seattle, US

2024-01-01 to present | Postdoctoral Researcher (Department of Genome Sciences and Computer Science)
Employment
Source: Self-asserted source
Xiao Wang

Education and qualifications (2)

Xi'an Jiaotong University: Xi'an, Shaanxi, CN

2014-08-24 to present | BS (Computer Technology and Science Department)
Education
Source: Self-asserted source
Xiao Wang

Purdue University: West Lafayette, IN, US

2018-08-20 to 2024-12-10 | PhD (Computer Science)
Education
Source: Self-asserted source
Xiao Wang

Works (50 of 62)

Items per page:
Page 1 of 2

Artificial Intelligence-Aided Digital Twin Design: A Systematic Review

2024 | Journal article
Contributors: Hao, Nan; Li, Yuangang; Liu, Kecheng; Liu, Songtao; Lu, Yingzhou; Xu, Bohao; Li, Chenhao; Chen, Jintai; Yue, Ling; Fu, Tianfan et al.
Source: Self-asserted source
Xiao Wang

CARES: A Comprehensive Benchmark of Trustworthiness in Medical Vision Language Models

arXiv preprint arXiv:2406.06007
2024 | Journal article
Contributors: Xia, Peng; Chen, Ze; Tian, Juanxi; Gong, Yangrui; Hou, Ruibo; Xu, Yue; Wu, Zhenbang; Fan, Zhiyuan; Zhou, Yiyang; Zhu, Kangyu et al.
Source: Self-asserted source
Xiao Wang

DeepMainmast: integrated protocol of protein structure modeling for cryo-EM with deep learning and structure prediction

Nature Methods
2024 | Journal article
Contributors: Terashi, Genki; Wang, Xiao; Prasad, Devashish; Nakamura, Tsukasa; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

DiffModeler: Large Macromolecular Structure Modeling in Low-Resolution Cryo-EM Maps Using Diffusion Model

bioRxiv
2024 | Journal article
Contributors: Wang, Xiao; Zhu, Han; Terashi, Genki; Taluja, Manav; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

Enhancing Hi-C contact matrices for loop detection with Capricorn: a multiview diffusion model

Bioinformatics
2024 | Journal article
Contributors: Fang, Tangqi; Liu, Yifeng; Woicik, Addie; Lu, Minsi; Jha, Anupama; Wang, Xiao; Li, Gang; Hristov, Borislav; Liu, Zixuan; Xu, Hanwen et al.
Source: Self-asserted source
Xiao Wang

OCTCube: A 3D foundation model for optical coherence tomography that improves cross-dataset, cross-disease, cross-device and cross-modality analysis

arXiv preprint arXiv:2408.11227
2024 | Journal article
Contributors: Liu, Zixuan; Xu, Hanwen; Woicik, Addie; Shapiro, Linda G; Blazes, Marian; Wu, Yue; Lee, Cecilia S; Lee, Aaron Y; Wang, Sheng
Source: Self-asserted source
Xiao Wang

Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Research Square
2024 | Journal article
Contributors: Lawson, Catherine L; Kryshtafovych, Andriy; Pintilie, Grigore D; Burley, Stephen K; Čerǹy, Jiř́ı; Chen, Vincent B; Emsley, Paul; Gobbi, Alberto; Joachimiak, Andrzej; Noreng, Sigrid et al.
Source: Self-asserted source
Xiao Wang

AdPE: Adversarial Positional Embeddings for Pretraining Vision Transformers via MAE+

arXiv preprint arXiv:2303.07598
2023 | Journal article
Contributors: Wang, Xiao; Wang, Ying; Xuan, Ziwei; Qi, Guo-Jun
Source: Self-asserted source
Xiao Wang

CaCo: Both positive and negative samples are directly learnable via cooperative-adversarial contrastive learning

IEEE Transactions on Pattern Analysis and Machine Intelligence
2023 | Journal article
Contributors: Wang, Xiao; Huang, Yuhang; Zeng, Dan; Qi, Guo-Jun
Source: Self-asserted source
Xiao Wang

CaCo: Both Positive and Negative Samples are Directly Learnable via Cooperative-adversarial Contrastive Learning

IEEE Transactions on Pattern Analysis and Machine Intelligence
2023 | Journal article | Author
DOI: 10.1109/tpami.2023.3262608
Part of ISSN: 0162-8828
Part of ISSN: 2160-9292
Part of ISSN: 1939-3539
Contributors: Xiao Wang; Yuhang Huang; dan zeng; Guo-Jun Qi
Source: Self-asserted source
Xiao Wang

ChiMera: Learning with noisy labels by contrasting mixed-up augmentations

arXiv preprint arXiv:2310.05183
2023 | Journal article
Contributors: Liu, Zixuan; Zhang, Xin; He, Junjun; Fu, Dan; Samaras, Dimitris; Tan, Robby; Wang, Xiao; Wang, Sheng
Source: Self-asserted source
Xiao Wang

Coseg: Cognitively inspired unsupervised generic event segmentation

IEEE Transactions on Neural Networks and Learning Systems
2023 | Journal article
Contributors: Wang, Xiao; Liu, Jingen; Mei, Tao; Luo, Jiebo
Source: Self-asserted source
Xiao Wang

CoSeg: Cognitively Inspired Unsupervised Generic Event Segmentation

IEEE Transactions on Neural Networks and Learning Systems
2023 | Journal article | Author
DOI: 10.1109/tnnls.2023.3263387
Part of ISSN: 2162-237X
Part of ISSN: 2162-2388
Contributors: Xiao Wang; Jingen Liu; Tao Mei; Jiebo Luo
Source: Self-asserted source
Xiao Wang

CryoREAD: de novo structure modeling for nucleic acids in cryo-EM maps using deep learning

Nature Methods
2023 | Journal article
Contributors: Wang, Xiao; Terashi, Genki; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

DAQ-Score Database: assessment of map--model compatibility for protein structure models from cryo-EM maps

Nature methods
2023 | Journal article
Contributors: Nakamura, Tsukasa; Wang, Xiao; Terashi, Genki; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study

Proteomics
2023 | Journal article
Contributors: Schweke, Hugo; Xu, Qifang; Tauriello, Gerardo; Pantolini, Lorenzo; Schwede, Torsten; Cazals, Frédéric; Lhéritier, Alix; Fernandez-Recio, Juan; Rodŕıguez-Lumbreras, Luis Angel; Schueler-Furman, Ora et al.
Source: Self-asserted source
Xiao Wang

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

arXiv preprint arXiv:2312.14249
2023 | Journal article
Contributors: Lu, Yingzhou; Shen, Minjie; Zhao, Yue; Li, Chenhao; Meng, Fan; Wang, Xiao; Herrington, David; Wang, Yue; Fu, Tim; Van Rechem, Capucine
Source: Self-asserted source
Xiao Wang

HIGHLY ACCURATE MACROMOLECULAR STRUCTURE COMPLEX DETECTION, DETERMINATION AND EVALUATION BY DEEP LEARNING

2023 | Dissertation or Thesis
Contributors: Wang, Xiao
Source: Self-asserted source
Xiao Wang

Machine learning for synthetic data generation: a review

arXiv preprint arXiv:2302.04062
2023 | Journal article
Contributors: Lu, Yingzhou; Shen, Minjie; Wang, Huazheng; Wang, Xiao; van Rechem, Capucine; Wei, Wenqi
Source: Self-asserted source
Xiao Wang

NuFold: a novel tertiary RNA structure prediction method using deep learning with flexible nucleobase center representation

bioRxiv
2023 | Journal article
Contributors: Kagaya, Yuki; Zhang, Zicong; Ibtehaz, Nabil; Wang, Xiao; Nakamura, Tsukasa; Huang, David; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

Protein model refinement for cryo-EM maps using AlphaFold2 and the DAQ score

Acta Crystallographica Section D: Structural Biology
2023 | Journal article
Contributors: Terashi, Genki; Wang, Xiao; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

VistaGPT: Generative parallel transformers for vehicles with intelligent systems for transport automation

IEEE Transactions on Intelligent Vehicles
2023 | Journal article
Contributors: Tian, Yonglin; Li, Xuan; Zhang, Hui; Zhao, Chen; Li, Bai; Wang, Xiao; Wang, Fei-Yue
Source: Self-asserted source
Xiao Wang

DAQ-Score Database: assessment of map–model compatibility for protein structure models from cryo-EM maps

Nature Methods
2023-05-09 | Journal article | Author
DOI: 10.1038/s41592-023-01876-1
Part of ISSN: 1548-7091
Part of ISSN: 1548-7105
Contributors: Tsukasa Nakamura; Xiao Wang; Genki Terashi; Daisuke Kihara
Source: Self-asserted source
Xiao Wang

Protein model refinement for cryo-EM maps using <i>AlphaFold</i>2 and the DAQ score

Acta Crystallographica Section D Structural Biology
2023-01-01 | Journal article
DOI: 10.1107/s2059798322011676
Part of ISSN: 2059-7983
Contributors: Genki Terashi; Xiao Wang; Daisuke Kihara
Source: Self-asserted source
Xiao Wang

Contrastive learning with stronger augmentations

IEEE transactions on pattern analysis and machine intelligence
2022 | Journal article
Contributors: Wang, Xiao; Qi, Guo-Jun
Source: Self-asserted source
Xiao Wang

Contrastive Learning with Stronger Augmentations

IEEE Transactions on Pattern Analysis and Machine Intelligence
2022 | Journal article | Author
DOI: 10.1109/tpami.2022.3203630
Part of ISSN: 0162-8828
Part of ISSN: 2160-9292
Part of ISSN: 1939-3539
Contributors: Xiao Wang; Guo-Jun Qi
Source: Self-asserted source
Xiao Wang

OC_Finder: osteoclast segmentation, counting, and classification using watershed and deep learning

Frontiers in bioinformatics
2022 | Journal article
Contributors: Wang, Xiao; Kittaka, Mizuho; He, Yilin; Zhang, Yiwei; Ueki, Yasuyoshi; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

On the importance of asymmetry for siamese representation learning

Proceedings of the IEEE/CVF conference on computer vision and pattern recognition
2022 | Conference paper
Contributors: Wang, Xiao; Fan, Haoqi; Tian, Yuandong; Kihara, Daisuke; Chen, Xinlei
Source: Self-asserted source
Xiao Wang

Residue-wise local quality estimation for protein models from cryo-EM maps

Nature methods
2022 | Journal article
Contributors: Terashi, Genki; Wang, Xiao; Maddhuri Venkata Subramaniya, Sai Raghavendra; Tesmer, John JG; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

SHREC 2022: protein--ligand binding site recognition

Computers & Graphics
2022 | Journal article
Contributors: Gagliardi, Luca; Raffo, Andrea; Fugacci, Ulderico; Biasotti, Silvia; Rocchia, Walter; Huang, Hao; Amor, Boulbaba Ben; Fang, Yi; Zhang, Yuanyuan; Wang, Xiao et al.
Source: Self-asserted source
Xiao Wang

Surface-based protein domains retrieval methods from a SHREC2021 challenge

Journal of Molecular Graphics and Modelling
2022 | Journal article
Contributors: Langenfeld, Florent; Aderinwale, Tunde; Christoffer, Charles; Shin, Woong-Hee; Terashi, Genki; Wang, Xiao; Kihara, Daisuke; Benhabiles, Halim; Hammoudi, Karim; Cabani, Adnane et al.
Source: Self-asserted source
Xiao Wang

Residue-wise local quality estimation for protein models from cryo-EM maps

Nature Methods
2022-09 | Journal article | Author
DOI: 10.1038/s41592-022-01574-4
Part of ISSN: 1548-7091
Part of ISSN: 1548-7105
Contributors: Genki Terashi; Xiao Wang; Sai Raghavendra Maddhuri Venkata Subramaniya; John J. G. Tesmer; Daisuke Kihara
Source: Self-asserted source
Xiao Wang

Learning Generalized Transformation Equivariant Representations Via AutoEncoding Transformations

IEEE Transactions on Pattern Analysis and Machine Intelligence
2022-04-01 | Journal article
DOI: 10.1109/tpami.2020.3029801
Part of ISSN: 0162-8828
Part of ISSN: 2160-9292
Part of ISSN: 1939-3539
Source: Self-asserted source
Xiao Wang

Activation of gene expression by detergent-like protein domains

Iscience
2021 | Journal article
Contributors: Broyles, Bradley K; Gutierrez, Andrew T; Maris, Theodore P; Coil, Daniel A; Wagner, Thomas M; Wang, Xiao; Kihara, Daisuke; Class, Caleb A; Erkine, Alexandre M
Source: Self-asserted source
Xiao Wang

Adco: Adversarial contrast for efficient learning of unsupervised representations from self-trained negative adversaries

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition
2021 | Conference paper
Contributors: Hu, Qianjiang; Wang, Xiao; Hu, Wei; Qi, Guo-Jun
Source: Self-asserted source
Xiao Wang

Detecting protein and DNA/RNA structures in cryo-em maps

Nature Communications
2021 | Journal article
Contributors: Wang, Xiao; Alnabati, Eman; Aderinwale, Tunde W; Subramaniya, Sai Raghavendra Maddhuri Venkata; Terashi, Genki; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

EnAET: A Self-Trained Framework for Semi-Supervised and Supervised Learning With Ensemble Transformations

IEEE Transactions on Image Processing
2021 | Journal article | Author
DOI: 10.1109/tip.2020.3044220
Part of ISSN: 1057-7149
Part of ISSN: 1941-0042
Contributors: Xiao Wang; Daisuke Kihara; Jiebo Luo; Guo-Jun Qi
Source: Self-asserted source
Xiao Wang

MAINMAST: De Novo Protein Structure Modeling for cryo-EM Maps Assisted by Structure Feature Detection by Deep Learning

ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES
2021 | Conference paper
Contributors: Terashi, Genki; Wang, Xiao; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment

Proteins: Structure, Function, and Bioinformatics
2021 | Journal article
Contributors: Lensink, Marc F; Brysbaert, Guillaume; Mauri, Théo; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphael AG; Clarence, Tereza; Bates, Paul A; Kong, Ren; Liu, Bin et al.
Source: Self-asserted source
Xiao Wang

Protein docking model evaluation by graph neural networks

Frontiers in Molecular Biosciences
2021 | Journal article
Contributors: Wang, Xiao; Flannery, Sean T; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

SHREC 2021: Classification in Cryo-electron Tomograms

Eurographics Workshop on 3D Object Retrieval
2021 | Conference paper
Contributors: Gubins; Chaillet, Ilja; and Schot, Marten L.; and van der; Trueba, Gijs; Veltkamp, M. Cristina; and Förster, Remco C.
Source: Self-asserted source
Xiao Wang

SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties

Computers & Graphics
2021 | Journal article
Contributors: Raffo, Andrea; Fugacci, Ulderico; Biasotti, Silvia; Rocchia, Walter; Liu, Yonghuai; Otu, Ekpo; Zwiggelaar, Reyer; Hunter, David; Zacharaki, Evangelia I; Psatha, Eleftheria et al.
Source: Self-asserted source
Xiao Wang

SHREC 2021: Surface-based Protein Domains Retrieval.

3DOR
2021 | Conference paper
Contributors: Langenfeld, Florent; Aderinwale, Tunde; Christoffer, Charles; Shin, Woong-Hee; Terashi, Genki; Wang, Xiao; Kihara, Daisuke; Benhabiles, Halim; Hammoudi, Karim; Cabani, Adnane et al.
Source: Self-asserted source
Xiao Wang

Detecting protein and DNA/RNA structures in cryo-EM maps of intermediate resolution using deep learning

Nature Communications
2021-12 | Journal article
DOI: 10.1038/s41467-021-22577-3
Part of ISSN: 2041-1723
Source: Self-asserted source
Xiao Wang

Protein Docking Model Evaluation by Graph Neural Networks

Frontiers in Molecular Biosciences
2021-05-25 | Journal article
DOI: 10.3389/fmolb.2021.647915
Part of ISSN: 2296-889X
Source: Self-asserted source
Xiao Wang

EnAET: A self-trained framework for semi-supervised and supervised learning with ensemble transformations

IEEE Transactions on Image Processing
2020 | Journal article
Contributors: Wang, Xiao; Kihara, Daisuke; Luo, Jiebo; Qi, Guo-Jun
Source: Self-asserted source
Xiao Wang

From AR to AI: augmentation technology for intelligent surgery and medical treatments

IFAC-PapersOnLine
2020 | Journal article
Contributors: Zhang, Mei; Zhang, Zhicheng; Wang, Xiao; Yu, Hui; Xia, Yifan; Tan, Kanran; Wang, Fei-Yue
Source: Self-asserted source
Xiao Wang

Learning generalized transformation equivariant representations via autoencoding transformations

IEEE Transactions on Pattern Analysis and Machine Intelligence
2020 | Journal article
Contributors: Qi, Guo-Jun; Zhang, Liheng; Lin, Feng; Wang, Xiao
Source: Self-asserted source
Xiao Wang

Protein docking model evaluation by 3D deep convolutional neural networks

Bioinformatics
2020 | Journal article
Contributors: Wang, Xiao; Terashi, Genki; Christoffer, Charles W; Zhu, Mengmeng; Kihara, Daisuke
Source: Self-asserted source
Xiao Wang

SHREC 2020: Classification in cryo-electron tomograms

Computers & Graphics
2020 | Journal article
Contributors: Gubins, Ilja; Chaillet, Marten L; van Der Schot, Gijs; Veltkamp, Remco C; Förster, Friedrich; Hao, Yu; Wan, Xiaohua; Cui, Xuefeng; Zhang, Fa; Moebel, Emmanuel et al.
Source: Self-asserted source
Xiao Wang
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