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Works (9)

Deep-learning based representation and recognition for genome variants—from SNVs to structural variants

National Science Review
2024-10-21 | Journal article
DOI: 10.1093/nsr/nwae335
Contributors: Songbo Wang; Kai Ye
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Crossref

Pindel-TD: A Tandem Duplication Detector Based on A Pattern Growth Approach

Genomics, Proteomics & Bioinformatics
2024-05-09 | Journal article
DOI: 10.1093/gpbjnl/qzae008
Contributors: Xiaofei Yang; Gaoyang Zheng; Peng Jia; Songbo Wang; Kai Ye; Fangqing Zhao
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Crossref

SVision: a deep learning approach to resolve complex structural variants

Nature Methods
2022-10 | Journal article
DOI: 10.1038/s41592-022-01609-w
Contributors: Jiadong Lin; Songbo Wang; Peter A. Audano; Deyu Meng; Jacob I. Flores; Walter Kosters; Xiaofei Yang; Peng Jia; Tobias Marschall; Christine R. Beck et al.
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Crossref

Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet

2022-09-12 | Preprint
DOI: 10.1101/2022.09.08.504083
Contributors: Peng Jia; Lianhua Dong; Xiaofei Yang; Bo Wang; Tingjie Wang; Jiadong Lin; Songbo Wang; Xixi Zhao; Tun Xu; Yizhuo Che et al.
Source: check_circle
Crossref

Comparison and benchmark of long-read based structural variant detection strategies

2022-08-11 | Preprint
DOI: 10.1101/2022.08.09.503274
Contributors: Jiadong Lin; Peng Jia; Songbo Wang; Kai Ye
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Crossref

Mako: A Graph-Based Pattern Growth Approach to Detect Complex Structural Variants

Genomics, Proteomics & Bioinformatics
2022-02-01 | Journal article
DOI: 10.1016/j.gpb.2021.03.007
Contributors: Jiadong Lin; Xiaofei Yang; Walter Kosters; Tun Xu; Yanyan Jia; Songbo Wang; Qihui Zhu; Mallory Ryan; Li Guo; Mark B. Gerstein et al.
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Crossref

Long read sequencing reveals sequential complex rearrangements driven by Hepatitis B virus integration

2021-12-09 | Preprint
DOI: 10.1101/2021.12.09.471697
Contributors: Songbo Wang; Jiadong Lin; Xiaofei Yang; Zihang Li; Xu Tun; Tingjie Wang; Bo Wang; Liangshuo Hu; Kai Ye
Source: check_circle
Crossref

High-quality Arabidopsis thaliana Genome Assembly with Nanopore and HiFi Long Reads

Genomics, Proteomics & Bioinformatics
2021-09 | Journal article
DOI: 10.1016/j.gpb.2021.08.003
Part of ISSN: 1672-0229
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songbo wang
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Mako: a graph-based pattern growth approach to detect complex structural variants

2021-03-02 | Other
DOI: 10.1101/2021.03.01.433465
Contributors: Jiadong Lin; Xiaofei Yang; Walter Kosters; Tun Xu; Yanyan Jia; Songbo Wang; Qihui Zhu; Mallory Ryan; Li Guo; Chengsheng Zhang et al.
Source: check_circle
Crossref
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