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Scopus Author ID: 6601988911

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Employment (1)

Iowa State University: Ames, IA, US

1999-02-08 to present | Professor (Animal Science)
Employment
Source: Self-asserted source
James Reecy

Education and qualifications (1)

Purdue University: West Lafayette, IN, US

1992-08-30 to 1995-12-15 | PhD (Animal Science)
Education
Source: Self-asserted source
James Reecy

Works (50 of 140)

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Page 1 of 3

Different oil sources impacting brain lipid and transcriptome profiles of pigs

Livestock Science
2024-06 | Journal article
DOI: 10.1016/j.livsci.2024.105490
Contributors: Bruna Pereira Martins da Silva; Simara Larissa Fanalli; Julia Dezen Gomes; Vivian Vezzoni de Almeida; Heidge Fukumasu; Gabriel Costa Monteiro Moreira; Bárbara Silva-Vignato; Juliana Afonso; James Mark Reecy; James Eugene Koltes et al.
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Crossref

Enhancing Bovine Genome AnnotationThrough Integration of Transcriptomics and Epi-Transcriptomics Datasets Facilitates Genomic Biology

2024-03-28 | Other
DOI: 10.1093/gigascience/giae019
Contributors: James Reecy; Hamid Beiki; Brenda M. Murdoch; Carissa A. Park; Chandlar Kern; Denise Kontechy; Gabrielle Becker; Gonzalo Rincon; Honglin Jiang; Huaijun Zhou et al.
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Crossref

A combinatorial approach implementing new database structures to facilitate practical data curation management of QTL, association, correlation and heritability data on trait variants

Database
2023-04-21 | Journal article
DOI: 10.1093/database/baad024
Contributors: Zhi-Liang Hu; Carissa A Park; James M Reecy
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Crossref

Transcriptome profile of skeletal muscle using different sources of dietary fatty acids in male pigs

Functional & Integrative Genomics
2023-03 | Journal article
DOI: 10.1007/s10142-023-00997-2
Contributors: Simara Larissa Fanalli; Bruna Pereira Martins da Silva; Julia Dezen Gomes; Vivian Vezzoni de Almeida; Gabriel Costa Monteiro Moreira; Bárbara Silva-Vignato; Juliana Afonso; Felipe André Oliveira Freitas; James Mark Reecy; James Eugene Koltes et al.
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Crossref

Differential Gene Expression Associated with Soybean Oil Level in the Diet of Pigs

Animals
2022-06-25 | Journal article
DOI: 10.3390/ani12131632
Contributors: Simara Larissa Fanalli; Bruna Pereira Martins da Silva; Julia Dezen Gomes; Vivian Vezzoni de Almeida; Felipe André Oliveira Freitas; Gabriel Costa Monteiro Moreira; Bárbara Silva-Vignato; Juliana Afonso; James Reecy; James Koltes et al.
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Differential Gene Expression Associated with Soybean Oil Level in the Diet of Pigs

2022-05-06 | Preprint
DOI: 10.20944/preprints202205.0081.v1
Contributors: Simara Larissa Fanalli; Bruna Pereira Martins Da Silva; Julia Dezen Gomes; Vivian Vezzoni De Almeida; Felipe André Oliveira Freitas; Gabriel Costa Monteiro Moreira; Bárbara Silva-Vignato; Juliana Afonso; James Reecy; James Koltes et al.
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Crossref

Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data.

BMC genomics
2019-05 | Journal article
DOI: 10.1186/s12864-019-5709-y
PMID: 31064321
Contributors: Beiki H; Liu H; Huang J; Manchanda N; Nonneman D; Smith TPL; Reecy JM; Tuggle CK
Source: Self-asserted source
James Reecy via Europe PubMed Central

Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB.

Nucleic acids research
2019-01 | Journal article
DOI: 10.1093/nar/gky1084
PMID: 30407520
PMC: PMC6323967
Contributors: Hu ZL; Park CA; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

Genome-wide association study for response to vaccination in Angus calves1.

BMC genetics
2019-01 | Journal article
DOI: 10.1186/s12863-018-0709-5
PMID: 30621575
PMC: PMC6325805
Contributors: Kramer LM; Mayes MS; Downey ED; Tait RG; Woolums A; Chase C; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

AdaptMap: exploring goat diversity and adaptation.

Genetics, selection, evolution : GSE
2018-11 | Journal article
DOI: 10.1186/s12711-018-0427-5
PMID: 30453882
PMC: PMC6240945
Contributors: Stella A; Nicolazzi EL; Van Tassell CP; Rothschild MF; Colli L; Rosen BD; Sonstegard TS; Crepaldi P; Tosser-Klopp G; Joost S et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

An integrative transcriptome analysis indicates regulatory mRNA-miRNA networks for residual feed intake in Nelore cattle.

Scientific reports
2018-11 | Journal article
DOI: 10.1038/s41598-018-35315-5
PMID: 30459456
PMC: PMC6244318
Contributors: De Oliveira PSN; Coutinho LL; Tizioto PC; Cesar ASM; de Oliveira GB; Diniz WJDS; De Lima AO; Reecy JM; Mourão GB; Zerlotini A et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap.

Annual review of animal biosciences
2018-11 | Journal article
DOI: 10.1146/annurev-animal-020518-114913
PMID: 30427726
Contributors: Giuffra E; Tuggle CK; FAANG Consortium
Source: Self-asserted source
James Reecy via Europe PubMed Central

Integration of genome wide association studies and whole genome sequencing provides novel insights into fat deposition in chicken.

Scientific reports
2018-11 | Journal article
DOI: 10.1038/s41598-018-34364-0
PMID: 30385857
PMC: PMC6212401
Contributors: Moreira GCM; Boschiero C; Cesar ASM; Reecy JM; Godoy TF; Pértille F; Ledur MC; Moura ASAMT; Garrick DJ; Coutinho LL
Source: Self-asserted source
James Reecy via Europe PubMed Central

Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle.

Frontiers in Genetics
2018-10 | Journal article
DOI: 10.3389/fgene.2018.00441
PMID: 30344530
PMC: PMC6182065
Contributors: Gonçalves TM; de Almeida Regitano LC; Koltes JE; Cesar ASM; da Silva Andrade SC; Mourão GB; Gasparin G; Moreira GCM; Fritz-Waters E; Reecy JM et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits.

BMC genomics
2018-06 | Journal article
DOI: 10.1186/s12864-018-4871-y
PMID: 29945546
PMC: PMC6020320
Contributors: Cesar ASM; Regitano LCA; Reecy JM; Poleti MD; Oliveira PSN; de Oliveira GB; Moreira GCM; Mudadu MA; Tizioto PC; Koltes JE et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens.

BMC genomics
2018-05 | Journal article
DOI: 10.1186/s12864-018-4779-6
PMID: 29783939
PMC: PMC5963092
Contributors: Moreira GCM; Boschiero C; Cesar ASM; Reecy JM; Godoy TF; Trevisoli PA; Cantão ME; Ledur MC; Ibelli AMG; Peixoto JO et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Genomic Analysis Suggests KITLG is Responsible for a Roan Pattern in two Pakistani Goat Breeds.

The Journal of heredity
2018-03 | Journal article
DOI: 10.1093/jhered/esx093
PMID: 29099936
Contributors: Talenti A; Bertolini F; Williams J; Moaeen-Ud-Din M; Frattini S; Coizet B; Pagnacco G; Reecy J; Rothschild MF; Crepaldi P et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Integration of machine learning and meta-analysis identifies the transcriptomic bio-signature of mastitis disease in cattle.

PloS one
2018-02 | Journal article
DOI: 10.1371/journal.pone.0191227
PMID: 29470489
PMC: PMC5823400
Contributors: Sharifi S; Pakdel A; Ebrahimi M; Reecy JM; Fazeli Farsani S; Ebrahimie E
Source: Self-asserted source
James Reecy via Europe PubMed Central

Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle.

BMC genomics
2018-02 | Journal article
DOI: 10.1186/s12864-018-4514-3
PMID: 29415651
PMC: PMC5804041
Contributors: Oliveira GB; Regitano LCA; Cesar ASM; Reecy JM; Degaki KY; Poleti MD; Felício AM; Koltes JE; Coutinho LL
Source: Self-asserted source
James Reecy via Europe PubMed Central

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.

Nature genetics
2018-02 | Journal article
DOI: 10.1038/s41588-018-0056-5
PMID: 29459679
Contributors: Bouwman AC; Daetwyler HD; Chamberlain AJ; Ponce CH; Sargolzaei M; Schenkel FS; Sahana G; Govignon-Gion A; Boitard S; Dolezal M et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Database : the journal of biological databases and curation
2018-01 | Journal article
DOI: 10.1093/database/bay088
PMID: 30239679
PMC: PMC6146126
Contributors: Harper L; Campbell J; Cannon EKS; Jung S; Poelchau M; Walls R; Andorf C; Arnaud E; Berardini TZ; Birkett C et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Cattle infection response network and its functional modules.

BMC immunology
2018-01 | Journal article
DOI: 10.1186/s12865-017-0238-4
PMID: 29301495
PMC: PMC5755453
Contributors: Beiki H; Pakdel A; Javaremi AN; Masoudi-Nejad A; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

Evaluation of responses to vaccination of Angus cattle for four viruses that contribute to bovine respiratory disease complex.

Journal of animal science
2017-11 | Journal article
DOI: 10.2527/jas2017.1793
PMID: 29293723
PMC: PMC6292290
Contributors: Kramer LM; Mayes MS; Fritz-Waters E; Williams JL; Downey ED; Tait RG; Woolums A; Chase C; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

Identification of genome-wide SNP-SNP interactions associated with important traits in chicken.

BMC genomics
2017-11 | Journal article
DOI: 10.1186/s12864-017-4252-y
PMID: 29162033
PMC: PMC5698929
Contributors: Zhang H; Yu JQ; Yang LL; Kramer LM; Zhang XY; Na W; Reecy JM; Li H
Source: Self-asserted source
James Reecy via Europe PubMed Central

Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle.

Frontiers in genetics
2017-11 | Journal article
DOI: 10.3389/fgene.2017.00171
PMID: 29163638
PMC: PMC5681485
Contributors: Mateescu RG; Garrick DJ; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis)

PLOS ONE
2017-10-05 | Journal article
DOI: 10.1371/journal.pone.0185220
Contributors: Daniela Iamartino; Peter J. Hansen; Ezequiel L. Nicolazzi; Curtis P. Van Tassell; James M. Reecy; Eric R. Fritz-Waters; James E. Koltes; Stefano Biffani; Tad S. Sonstegard; Steven G. Schroeder et al.
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Crossref

Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure.

G3 (Bethesda, Md.)
2017-05 | Journal article
DOI: 10.1534/g3.117.041228
PMID: 28341699
PMC: PMC5427493
Contributors: Fleming DS; Weigend S; Simianer H; Weigend A; Rothschild M; Schmidt C; Ashwell C; Persia M; Reecy J; Lamont SJ
Source: Self-asserted source
James Reecy via Europe PubMed Central

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection.

Scientific reports
2017-04 | Journal article
DOI: 10.1038/srep46203
PMID: 28393889
PMC: PMC5385538
Contributors: Kommadath A; Bao H; Choi I; Reecy JM; Koltes JE; Fritz-Waters E; Eisley CJ; Grant JR; Rowland RR; Tuggle CK et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content.

BMC genomics
2016-11 | Journal article
DOI: 10.1186/s12864-016-3306-x
PMID: 27875996
PMC: PMC5120530
Contributors: Cesar AS; Regitano LC; Poleti MD; Andrade SC; Tizioto PC; Oliveira PS; Felício AM; do Nascimento ML; Chaves AS; Lanna DP et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Epistatic interactions associated with fatty acid concentrations of beef from angus sired beef cattle.

BMC genomics
2016-11 | Journal article
DOI: 10.1186/s12864-016-3235-8
PMID: 27821053
PMC: PMC5100273
Contributors: Kramer LM; Ghaffar MA; Koltes JE; Fritz-Waters ER; Mayes MS; Sewell AD; Weeks NT; Garrick DJ; Fernando RL; Ma L et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Large-scale gene co-expression network as a source of functional annotation for cattle genes.

BMC genomics
2016-11 | Journal article
DOI: 10.1186/s12864-016-3176-2
PMID: 27806696
PMC: PMC5094014
Contributors: Beiki H; Nejati-Javaremi A; Pakdel A; Masoudi-Nejad A; Hu ZL; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

Single nucleotide variant discovery of highly inbred Leghorn and Fayoumi chicken breeds using pooled whole genome resequencing data reveals insights into phenotype differences.

BMC genomics
2016-10 | Journal article
DOI: 10.1186/s12864-016-3147-7
PMID: 27760519
PMC: PMC5070165
Contributors: Fleming DS; Koltes JE; Fritz-Waters ER; Rothschild MF; Schmidt CJ; Ashwell CM; Persia ME; Reecy JM; Lamont SJ
Source: Self-asserted source
James Reecy via Europe PubMed Central

Genome-wide methylation profile following prenatal and postnatal dietary omega-3 fatty acid supplementation in pigs.

Animal genetics
2016-08 | Journal article
DOI: 10.1111/age.12468
PMID: 27558209
Contributors: Boddicker RL; Koltes JE; Fritz-Waters ER; Koesterke L; Weeks N; Yin T; Mani V; Nettleton D; Reecy JM; Baumgard LH et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes.

Animal genetics
2016-07 | Journal article
DOI: 10.1111/age.12466
PMID: 27453069
PMC: PMC5082551
Contributors: Tuggle CK; Giuffra E; White SN; Clarke L; Zhou H; Ross PJ; Acloque H; Reecy JM; Archibald A; Bellone RR et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Deriving Gene Networks from SNP Associated with Triacylglycerol and Phospholipid Fatty Acid Fractions from Ribeyes of Angus Cattle.

Frontiers in genetics
2016-06 | Journal article
DOI: 10.3389/fgene.2016.00116
PMID: 27379164
PMC: PMC4913692
Contributors: Buchanan JW; Reecy JM; Garrick DJ; Duan Q; Beitz DC; Koltes JE; Saatchi M; Koesterke L; Mateescu RG
Source: Self-asserted source
James Reecy via Europe PubMed Central

Genomic analysis of Ugandan and Rwandan chicken ecotypes using a 600 k genotyping array.

BMC genomics
2016-05 | Journal article
DOI: 10.1186/s12864-016-2711-5
PMID: 27230772
PMC: PMC4882793
Contributors: Fleming DS; Koltes JE; Markey AD; Schmidt CJ; Ashwell CM; Rothschild MF; Persia ME; Reecy JM; Lamont SJ
Source: Self-asserted source
James Reecy via Europe PubMed Central

Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL.

BMC genomics
2016-03 | Journal article
DOI: 10.1186/s12864-016-2547-z
PMID: 26951612
PMC: PMC4782518
Contributors: Schroyen M; Eisley C; Koltes JE; Fritz-Waters E; Choi I; Plastow GS; Guan L; Stothard P; Bao H; Kommadath A et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Developmental progress and current status of the Animal QTLdb.

Nucleic acids research
2015-11 | Journal article
DOI: 10.1093/nar/gkv1233
PMID: 26602686
PMC: PMC4702873
Contributors: Hu ZL; Park CA; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection.

BMC genomics
2015-07 | Journal article
DOI: 10.1186/s12864-015-1741-8
PMID: 26159815
PMC: PMC4496889
Contributors: Schroyen M; Steibel JP; Koltes JE; Choi I; Raney NE; Eisley C; Fritz-Waters E; Reecy JM; Dekkers JC; Rowland RR et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Putative regulatory factors associated with intramuscular fat content.

PloS one
2015-06 | Journal article
DOI: 10.1371/journal.pone.0128350
PMID: 26042666
PMC: PMC4456163
Contributors: Cesar AS; Regitano LC; Koltes JE; Fritz-Waters ER; Lanna DP; Gasparin G; Mourão GB; Oliveira PS; Reecy JM; Coutinho LL
Source: Self-asserted source
James Reecy via Europe PubMed Central

Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection.

BMC genomics
2015-05 | Journal article
DOI: 10.1186/s12864-015-1635-9
PMID: 26016888
PMC: PMC4446061
Contributors: Koltes JE; Fritz-Waters E; Eisley CJ; Choi I; Bao H; Kommadath A; Serão NV; Boddicker NJ; Abrams SM; Schroyen M et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Nucleic acids research
2015-04 | Journal article
DOI: 10.1093/nar/gkv350
PMID: 25897122
PMC: PMC4489294
Contributors: Smedley D; Haider S; Durinck S; Pandini L; Provero P; Allen J; Arnaiz O; Awedh MH; Baldock R; Barbiera G et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Transcriptional profiling of PRKG2-null growth plate identifies putative down-stream targets of PRKG2.

BMC research notes
2015-04 | Journal article
DOI: 10.1186/s13104-015-1136-6
PMID: 25924610
PMC: PMC4419418
Contributors: Koltes JE; Kumar D; Kataria RS; Cooper V; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Genome biology
2015-03 | Journal article
DOI: 10.1186/s13059-015-0622-4
PMID: 25854118
PMC: PMC4373242
Contributors: Andersson L; Archibald AL; Bottema CD; Brauning R; Burgess SC; Burt DW; Casas E; Cheng HH; Clarke L; Couldrey C et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle.

Genetics, selection, evolution : GSE
2015-03 | Journal article
DOI: 10.1186/s12711-014-0083-3
PMID: 25880074
PMC: PMC4355494
Contributors: Tizioto PC; Taylor JF; Decker JE; Gromboni CF; Mudadu MA; Schnabel RD; Coutinho LL; Mourão GB; Oliveira PS; Souza MM et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central

Sire breed effect on beef longissimus mineral concentrations and their relationships with carcass and palatability traits.

Meat science
2015-03 | Journal article
DOI: 10.1016/j.meatsci.2015.03.020
PMID: 25866932
Contributors: Duan Q; Tait RG; Schneider MJ; Beitz DC; Wheeler TL; Shackelford SD; Cundiff LV; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

Gene co-expression network analysis provides novel insights into myostatin regulation at three different mouse developmental timepoints.

PloS one
2015-02 | Journal article
DOI: 10.1371/journal.pone.0117607
PMID: 25695797
PMC: PMC4335066
Contributors: Yang X; Koltes JE; Park CA; Chen D; Reecy JM
Source: Self-asserted source
James Reecy via Europe PubMed Central

Genetic parameters and genetic correlations among triacylglycerol and phospholipid fractions in Angus cattle.

Journal of animal science
2015-02 | Journal article
DOI: 10.2527/jas.2014-8418
PMID: 26020741
Contributors: Buchanan JW; Reecy JM; Garrick DJ; Duan Q; Beitz DC; Mateescu RG
Source: Self-asserted source
James Reecy via Europe PubMed Central

RAPTR-SV: a hybrid method for the detection of structural variants.

Bioinformatics (Oxford, England)
2015-02 | Journal article
DOI: 10.1093/bioinformatics/btv086
PMID: 25686638
Contributors: Bickhart DM; Hutchison JL; Xu L; Schnabel RD; Taylor JF; Reecy JM; Schroeder S; Van Tassell CP; Sonstegard TS; Liu GE
Source: Self-asserted source
James Reecy via Europe PubMed Central

Evaluation of variant identification methods for whole genome sequencing data in dairy cattle.

BMC genomics
2014-11 | Journal article
DOI: 10.1186/1471-2164-15-948
PMID: 25361890
PMC: PMC4289218
Contributors: Baes CF; Dolezal MA; Koltes JE; Bapst B; Fritz-Waters E; Jansen S; Flury C; Signer-Hasler H; Stricker C; Fernando R et al.
Source: Self-asserted source
James Reecy via Europe PubMed Central
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