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Employment (1)

Universidade de Sao Paulo: Sao Paulo, SP, BR

2010-07-02 to present | Assistant Professor (Escola de Artes, Ciencias e Humanidades)
Employment
Source: Self-asserted source
Alexandre F. Ramos

Works (26)

Insights from a Computational-Based Approach for Analyzing Autophagy Genes across Human Cancers

Genes
2023-07 | Journal article | Author
Contributors: Alexis Germán Murillo Carrasco; Guilherme Giovanini; Alexandre F. Ramos; chammas r; Silvina Odete Bustos
Source: check_circle
Multidisciplinary Digital Publishing Institute

A Stochastic Binary Model for the Regulation of Gene Expression to Investigate Responses to Gene Therapy

Cancers
2022-01 | Journal article | Author
Contributors: Guilherme Giovanini; Barros, L; Leonardo Gama; Tharcisio Citrangulo Tortelli Jr; Alexandre F. Ramos
Source: check_circle
Multidisciplinary Digital Publishing Institute

Optimal low-latency network topologies for cluster performance enhancement

Journal of Supercomputing
2020 | Journal article
EID:

2-s2.0-85081565635

Contributors: Deng, Y.; Guo, M.; Ramos, A.F.; Huang, X.; Xu, Z.; Liu, W.
Source: Self-asserted source
Alexandre F. Ramos via Scopus - Elsevier

A comparative analysis of noise properties of stochastic binary models for a self-repressing and for an externally regulating gene

Mathematical Biosciences and Engineering
2020-08-13 | Journal article
Part of ISSN: 1551-0018
Source: Self-asserted source
Alexandre F. Ramos

Binary Expression Enhances Reliability of Messaging in Gene Networks

Entropy
2020-04 | Journal article | Author
Contributors: Leonardo R. Gama; Guilherme Giovanini; Gábor Balázsi; Alexandre F. Ramos
Source: check_circle
Multidisciplinary Digital Publishing Institute

Stochastic modeling for investigation of the regulation of transcription of the RKIP gene

Prognostic and Therapeutic Applications of RKIP in Cancer
2020-02-05 | Book chapter
Part of ISBN: 9780128196120
Source: Self-asserted source
Alexandre F. Ramos

GD3 ganglioside-enriched extracellular vesicles stimulate melanocyte migration

Biochim Biophys Acta Mol Cell Biol Lipids
2019 | Journal article
Source: Self-asserted source
Alexandre F. Ramos
grade
Preferred source (of 3)‎

Peri/epicellular protein disulfide isomerase-A1 acts as an upstream organizer of cytoskeletal mechanoadaptation in vascular smooth muscle cells

Am J Physiol Heart Circ Physiol
2019 | Journal article
Contributors: Tanaka, L. Y.; Araujo, T. L. S.; Rodriguez, A. I.; Ferraz, M. S.; Pelegati, V. B.; Morais, M. C. C.; Santos, A. M. D.; Cesar, C. L.; Ramos, A. F.; Alencar, A. M. et al.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

A simulation of laser energy absorption by a nanowired surface

2019 SBFoton International Optics and Photonics Conference (SBFoton IOPC)
2019-10 | Conference paper
Source: Self-asserted source
Alexandre F. Ramos
grade
Preferred source (of 2)‎

Physical implications of so(2, 1) symmetry in exact solutions for a self-repressing gene

The Journal of Chemical Physics
2019-07-28 | Journal article
Part of ISSN: 0021-9606
Part of ISSN: 1089-7690
Source: Self-asserted source
Alexandre F. Ramos
grade
Preferred source (of 2)‎

Lessons and perspectives for applications of stochastic models in biological and cancer research

Clinics (Sao Paulo)
2018 | Journal article
Contributors: Sabino, A. U.; Vasconcelos, M. F.; Sittoni, M. Y.; Lautenschlager, W. W.; Queiroga, A. S.; Morais, M. C.; Ramos, A. F.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Symmetry-guided design of topologies for supercomputer networks

International Journal of Modern Physics C
2018 | Journal article
Contributors: Alan U Sabino, Miguel FS Vasconcelos, Yuefan Deng, Alexandre F Ramos
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Backward-stochastic-differential-equation approach to modeling of gene expression

Phys Rev E
2017 | Journal article
Contributors: Shamarova, E.; Chertovskih, R.; Ramos, A. F.; Aguiar, P.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Stochastic model of contact inhibition and the proliferation of melanoma in situ

Sci Rep
2017 | Journal article
Contributors: Morais, M. C. C.; Stuhl, I.; Sabino, A. U.; Lautenschlager, W. W.; Queiroga, A. S.; Tortelli, T. C.; Chammas, R.; Suhov, Y.; Ramos, A. F.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation

BMC Syst Biol
2017 | Journal article
Contributors: Barr, K. A.; Martinez, C.; Moran, J. R.; Kim, A. R.; Ramos, A. F.; Reinitz, J.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Stochastic model for gene transcription on Drosophila melanogaster embryos

Physical Review E
2016 | Journal article
WOSUID:

WOS:000369437700007

Contributors: Prata, Guilherme N.; Hornos, Jose Eduardo M.; Ramos, Alexandre F.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Comment on "Steady-state fluctuations of a genetic feedback loop: An exact solution" [J. Chem. Phys. 137, 035104 (2012)]

Journal of Chemical Physics
2015 | Journal article
WOSUID:

WOS:000348129700059

Contributors: Innocentini, Guilherme C. P.; Ramos, Alexandre F.; Hornos, Jose Eduardo M.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Gene regulation and noise reduction by coupling of stochastic processes

Physical Review E
2015 | Journal article
WOSUID:

WOS:000350210000001

Contributors: Ramos, Alexandre F.; Hornos, Jose Eduardo M.; Reinitz, John
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Multimodality and Flexibility of Stochastic Gene Expression

Bulletin of Mathematical Biology
2013 | Journal article
WOSUID:

WOS:000327073000014

Contributors: Innocentini, Guilherme da Costa Pereira; Forger, Michael; Ramos, Alexandre Ferreira; Radulescu, Ovidiu; Martinho Hornos, Jose Eduardo
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Rearrangements of 2.5 Kilobases of Noncoding DNA from the Drosophila even-skipped Locus Define Predictive Rules of Genomic cis-Regulatory Logic

Plos Genetics
2013 | Journal article
WOSUID:

WOS:000315638300009

Contributors: Kim, Ah-Ram; Martinez, Carlos; Ionides, John; Ramos, Alexandre F.; Ludwig, Michael Z.; Ogawa, Nobuo; Sharp, David H.; Reinitz, John
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Erratum: Exact time-dependent solutions for a self-regulating gene (Physical Review E - Statistical, Nonlinear, and Soft Matter Physics)

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
2012 | Journal article
EID:

2-s2.0-84860533524

Contributors: Ramos, A.F.; Innocentini, G.C.P.; Hornos, J.E.M.
Source: Self-asserted source
Alexandre F. Ramos via Scopus - Elsevier

SYMMETRY INSIGHTS FOR DESIGN OF SUPERCOMPUTER NETWORK TOPOLOGIES: ROOTS AND WEIGHTS LATTICES

International Journal of Modern Physics B
2012 | Journal article
WOSUID:

WOS:000311844100004

Contributors: Deng, Yuefan; Ramos, Alexandre F.; Hornos, Jose Eduardo M.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Exact time-dependent solutions for a self-regulating gene

Physical Review E
2011 | Journal article
WOSUID:

WOS:000292260900013

Contributors: Ramos, A. F.; Innocentini, G. C. P.; Hornos, J. E. M.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Symmetry in biology: from genetic code to stochastic gene regulation

Iet Systems Biology
2010 | Journal article
WOSUID:

WOS:000281622300003

Contributors: Ramos, A. F.; Innocentini, G. C. P.; Forger, F. M.; Hornos, J. E. M.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

Symmetry and stochastic gene regulation

Physical Review Letters
2007 | Journal article
WOSUID:

WOS:000249324100035

Contributors: Ramos, A. F.; Hornos, J. E. M.
Source: Self-asserted source
Alexandre F. Ramos via ResearcherID
grade
Preferred source (of 2)‎

A Stochastic Binary Model for Regulation of Gene Expression to Investigate Treatment Effects Targeting RKIP

Source: check_circle
Multidisciplinary Digital Publishing Institute

Peer review (9 reviews for 5 publications/grants)

Review activity for Clinics. (1)
Review activity for Journal of mathematical biology. (1)
Review activity for Nutrition. (2)
Review activity for PloS one. (1)
Review activity for The journal of supercomputing. (4)