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Works (9)

Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data

eLife
2024-10-10 | Journal article
DOI: 10.7554/eLife.98300.3
Contributors: Michael B Hall; Ryan R Wick; Louise M Judd; An N Nguyen; Eike J Steinig; Ouli Xie; Mark Davies; Torsten Seemann; Timothy P Stinear; Lachlan Coin
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Crossref

Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data

eLife
2024-10-10 | Journal article
DOI: 10.7554/eLife.98300
Contributors: Michael B Hall; Ryan R Wick; Louise M Judd; An N Nguyen; Eike J Steinig; Ouli Xie; Mark Davies; Torsten Seemann; Timothy P Stinear; Lachlan Coin
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Crossref

Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data

2024-09-05 | Preprint
DOI: 10.7554/eLife.98300.2
Contributors: Michael B Hall; Ryan R Wick; Louise M Judd; An NT Nguyen; Eike J Steinig; Ouli Xie; Mark R Davies; Torsten Seemann; Timothy P Stinear; Lachlan JM Coin
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Crossref

Uncovering strain- and age-dependent innate immune responses to SARS-CoV-2 infection in air-liquid-interface cultured nasal epithelia

iScience
2024-05 | Journal article
DOI: 10.1016/j.isci.2024.110009
Part of ISSN: 2589-0042
Contributors: Jessie J.-Y. Chang; Samantha Grimley; Bang M. Tran; Georgia Deliyannis; Carolin Tumpach; An N.T. Nguyen; Eike Steinig; JianShu Zhang; Jan Schröder; Leon Caly et al.
Source: Self-asserted source
An Nguyen

Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data

2024-05-20 | Preprint
DOI: 10.7554/eLife.98300.1
Contributors: Michael B. Hall; Ryan R. Wick; Louise M. Judd; An N. T. Nguyen; Eike J. Steinig; Ouli Xie; Mark R. Davies; Torsten Seemann; Timothy P. Stinear; Lachlan J. M. Coin
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Crossref

Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data

2024-03-16 | Preprint
DOI: 10.1101/2024.03.15.585313
Contributors: Michael B. Hall; Ryan R. Wick; Louise M. Judd; An N. T. Nguyen; Eike J. Steinig; Ouli Xie; Mark R. Davies; Torsten Seemann; Timothy P. Stinear; Lachlan J. M. Coin
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Crossref

Horizontal gene transfer facilitates the molecular reverse-evolution of antibiotic sensitivity in experimental populations of H. pylori

Nature Ecology & Evolution
2024-01-04 | Journal article
DOI: 10.1038/s41559-023-02269-5
Contributors: An N. T. Nguyen; Rebecca Gorrell; Terry Kwok; Tim Connallon; Michael J. McDonald
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Crossref

Recombination resolves the cost of horizontal gene transfer in experimental populations of Helicobacter pylori

Proceedings of the National Academy of Sciences
2022-03-22 | Journal article
DOI: 10.1073/pnas.2119010119
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Source: Self-asserted source
An Nguyen
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Revisiting Antibiotic Resistance: Mechanistic Foundations to Evolutionary Outlook

Antibiotics
2021-12 | Journal article | Author
DOI: 10.3390/antibiotics11010040
Contributors: Chowdhury Mehedi Hasan; Debprasad Dutta; An Nguyen
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Multidisciplinary Digital Publishing Institute
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