Christophe TATOUT (0000-0001-5215-2338)

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Our team "Chromatin and 3D Nuclear Dynamics" (CODED) belongs to the Institute of Genetics, Reproduction and Dévelopment (iGReD) in Clermont Ferrand, France. We investigate the role of chromatin organization in the dynamic transcriptional regulation occurring during development and in response to environmental stimuli.

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Université Clermont Auvergne: Clermont-Ferrand, Auvergne, FR

2009-10-01 to present | Professor, Head of the Master's program in Bioinformatics, UCA (Biology)

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Christophe TATOUT

https://orcid.org/0000-0001-5215-2338

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Employment (1)

Université Clermont Auvergne: Clermont-Ferrand, Auvergne, FR

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Université Clermont Auvergne - Campus des Cézeaux: Clermont-Ferrand, Auvergne-Rhône-Alpes, FR

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Society for Experimental Biology: London, GB

Works (50 of 54)

SortingF. graminearumcore effector candidates shows multiple fungal proteins that target the wheat cell nucleus during Fusarium Head Blight

Biom3d, a modular framework to host and develop 3D segmentation methods

Evolutionarily conserved protein motifs drive interactions between the plant nucleoskeleton and nuclear pores

Distinct clades of TELOMERE REPEAT BINDING transcriptional regulators interplay to regulate plant development

In Depth Topological Analysis of Arabidopsis Mid-SUN Proteins and Their Interaction with the Membrane-Bound Transcription Factor MaMYB

Image analysis workflows to reveal the spatial organization of cell nuclei and chromosomes

The INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) Academy: a community resource for plant science

Deep learning ­– promises for 3D nuclear imaging: a guide for biologists

NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects

Advancing knowledge of the plant nuclear periphery and its application for crop science

Automated 3D bio-imaging analysis of nuclear organization by NucleusJ 2.0

The H3 histone chaperone NASPSIM 3 escorts CenH3 in Arabidopsis.

Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions

Meeting report – INDEPTH kick-off meeting

Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development.

Genetic and epigenetic variation in 5S ribosomal RNA genes reveals genome dynamics in Arabidopsis thaliana.

Computational Methods for Studying the Plant Nucleus.

Investigation of Nuclear Periphery Protein Interactions in Plants Using the Membrane Yeast Two-Hybrid (MbY2H) System.

Quantitative 3D Analysis of Nuclear Morphology and Heterochromatin Organization from Whole-Mount Plant Tissue Using NucleusJ.

Spatial organization of chromosome territories in the interphase nucleus of trisomy 21 cells.

Arabidopsis ATRX Modulates H3.3 Occupancy and Fine-Tunes Gene Expression.

The LINC complex contributes to heterochromatin organisation and transcriptional gene silencing in plants

A novel family of plant nuclear envelope-associated proteins.

Exploring the evolution of the proteins of the plant nuclear envelope.

Marker gene tethering by nucleoporins affects gene expression in plants

NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei

Structure and Function of Centromeric and Pericentromeric Heterochromatin in Arabidopsis thaliana

The histone chaperone complex HIR maintains nucleosome occupancy and counterbalances impaired histone deposition in CAF-1 complex mutants

Characterization of two distinct subfamilies of SUN-domain proteins in Arabidopsis and their interactions with the novel KASH-domain protein AtTIK

Evolutionary history of Methyltransferase 1 genes in hexaploid wheat

The plant LINC complex at the nuclear envelope

Different mutations in the ZmCAD2 gene underlie the maize brown-midrib1 (bm1) phenotype with similar effects on lignin characteristics and have potential interest for bioenergy production

Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression

TOWARD THE DISCOVERY OF MAIZE CELL WALL GENES INVOLVED IN SHAGE QUALITY AND CAPACITY TO BIOFUEL PRODUCTION

empty pericarp4 encodes a mitochondrion-targeted pentatricopeptide repeat protein necessary for seed development and plant growth in maize

Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production

UDP-glucose dehydrogenases of maize: a role in cell wall pentose biosynthesis

Extensive conservation of sequences and chromatin structures in the bxd Polycomb Response Element among Drosophilid species

Utilization of the IR hybrid dysgenesis system in Drosophila to test in vivo mobilization of synthetic SINEs sharing 3 ' homology with the I factor

Extensive conservation of sequences and chromatin structures in the bxd polycomb response element among Drosophilid species.

Target sites for SINE integration in Brassica genomes display nuclear matrix binding activity

Artificial and epigenetic regulation of the I factor, a nonviral retrotransposon of Drosophila melanogaster

P-element transposition in Drosophila melanogaster: influence of size and arrangement in pairs

Structure of a Polycomb response element and in vitro binding of Polycomb group complexes containing GAGA factor

Artificial and epigenetic regulation of the I factor, a nonviral retrotransposon of Drosophila melanogaster.

P-element transposition in Drosophila melanogaster: influence of size and arrangement in pairs.

S1 SINE retroposons are methylated at symmetrical and non-symmetrical positions in Brassica napus: identification of a preferred target site for asymmetrical methylation

S1 SINE retroposons are methylated at symmetrical and non-symmetrical positions in Brassica napus: identification of a preferred target site for asymmetrical methylation (vol 39, pg 243, 1999)

SINE insertions as clade markers for wild crucifer species

Rapid evaluation in Escherichia coli of antisense RNAs and ribozymes

Peer review (4 reviews for 4 publications/grants)

Deep learning – promises for 3D nuclear imaging: a guide for biologists