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Scopus Author ID: 36778123500

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Employment (6)

Thomas Jefferson University: Philadelphia, Pennsylvania, US

2023-06-12 to present | Professor
Employment
Source: Self-asserted source
Yohei Kirino

Thomas Jefferson University: Philadelphia, PA, US

2018-04-01 to 2023-06-11 | Associate Professor
Employment
Source: Self-asserted source
Yohei Kirino

Thomas Jefferson University: Philadelphia, Pennsylvania, US

2013-07-15 to 2018-03-31 | Assistant Professor
Employment
Source: Self-asserted source
Yohei Kirino

Cedars-Sinai Medical Center: Los Angeles, California, US

2010-09-01 to 2013-07-14 | Assistant Professor
Employment
Source: Self-asserted source
Yohei Kirino

University of Pennsylvania: Philadelphia, Pennsylvania, US

2009-02-01 to 2010-08-31 | Research Associate
Employment
Source: Self-asserted source
Yohei Kirino

University of Pennsylvania: Philadelphia, Pennsylvania, US

2006-04-01 to 2009-01-30 | Postdoc Research Fellow
Employment
Source: Self-asserted source
Yohei Kirino

Education and qualifications (3)

The University of Tokyo: Tokyo, JP

2003-04-01 to 2006-03-31 | Ph.D.
Education
Source: Self-asserted source
Yohei Kirino

The University of Tokyo: Tokyo, JP

2001-04-01 to 2003-03-31 | M.Sc.
Education
Source: Self-asserted source
Yohei Kirino

The University of Tokyo: Tokyo, JP

1997-04-01 to 2001-03-31 | B.Sc.
Education
Source: Self-asserted source
Yohei Kirino

Funding (9)

Hormone-dependent small functional RNAs in breast and prostate cancers

2017-07 to 2021-06 | Grant
American Cancer Society (GA, GA, US)
Source: Self-asserted source
Yohei Kirino

Role of proinflammatory tRNA-derived RNAs in asthma

2017-01-10 to 2018-12-31 | Grant
National Institute of Allergy and Infectious Diseases (n/a, US)
URL: https://grants.uberresearch.com/100000060/R21AI130496/Role-of-proinflammatory-tRNA-derived-RNAs-in-asthma
GRANT_NUMBER: R21AI130496
Source: Self-asserted source
Yohei Kirino via DimensionsWizard

Hormone-dependent Small Functional RNAs in Breast and Prostate Cancers

2017-01 to 2017-12 | Grant
W.W. Smith Charitable Trust (West Conshohocken, US)
Source: Self-asserted source
Yohei Kirino

The molecular basis of mitochondrial MELAS syndrome

2014-09 to 2015-09 | Grant
Deans’ Transformational Science Award, Thomas Jefferson University (Philadelphia, US)
Source: Self-asserted source
Yohei Kirino

piRNA biogenesis ruled by PIWI-TUDOR interaction

2013-08-01 to 2018-05-31 | Grant
National Institute of General Medical Sciences (n/a, US)
URL: https://grants.uberresearch.com/100000057/R01GM106047/piRNA-biogenesis-ruled-by-PIWI-TUDOR-interaction
GRANT_NUMBER: R01GM106047
Source: Self-asserted source
Yohei Kirino via DimensionsWizard

PIWI/piRNA pathway in breast cancer

2012-04 to 2013-07 | Grant
Cedars-Sinai Medical Center (Los Angeles, US)
Source: Self-asserted source
Yohei Kirino

Identification of piRNA targets in the Drosophila germline

2011-11 to 2012-11 | Grant
The Sumitomo Foundation (Tokyo, JP)
Source: Self-asserted source
Yohei Kirino

Mammalian piRNAs and their targets

2007-05-01 to 2010-04-30 | Grant
Human Frontiers Science Program (Strasbourg, FR)
URL: https://grants.uberresearch.com/501100000854/c092db03/Mammalian-piRNAs-and-their-targets
GRANT_NUMBER:

c092db03
Source: Self-asserted source
Yohei Kirino via DimensionsWizard

Molecular pathogenesis of human mitochondrial disease caused by tRNA wobble modification deficiency

2003-04 to 2006-03 | Salary award
Japan Society for the Promotion of Science (Tokyo, JP)
Source: Self-asserted source
Yohei Kirino

Works (50 of 61)

Items per page:
Page 1 of 2

Angiogenin-catalyzed cleavage within tRNA anticodon-loops identified by cP-RNA-seq

Bioscience, Biotechnology, and Biochemistry
2025-02-20 | Journal article
DOI: 10.1093/bbb/zbae192
Contributors: Megumi Shigematsu; Ryuma Matsubara; Justin Gumas; Takuya Kawamura; Yohei Kirino
Source: check_circle
Crossref

Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme

RNA Biology
2024-12-04 | Journal article
DOI: 10.1080/15476286.2019.1664885
Contributors: Kamlesh Pawar; Megumi Shigematsu; Phillipe Loher; Shozo Honda; Isidore Rigoutsos; Yohei Kirino
Source: check_circle
Crossref

Immunoactive signatures of circulating tRNA- and rRNA-derived RNAs in chronic obstructive pulmonary disease

Molecular Therapy - Nucleic Acids
2024-09 | Journal article
DOI: 10.1016/j.omtn.2024.102285
Contributors: Megumi Shigematsu; Takuya Kawamura; Deepak A. Deshpande; Yohei Kirino
Source: check_circle
Crossref

Immunoactive signatures of circulating tRNA- and rRNA-derived RNAs in chronic obstructive pulmonary disease

2024-06-19 | Preprint
DOI: 10.1101/2024.06.19.599707
Contributors: Megumi Shigematsu; Takuya Kawamura; Deepak A. Deshpande; Yohei Kirino
Source: check_circle
Crossref

The tRNA Val half: A strong endogenous Toll-like receptor 7 ligand with a 5′-terminal universal sequence signature

Proceedings of the National Academy of Sciences
2024-05-07 | Journal article
DOI: 10.1073/pnas.2319569121
Contributors: Kamlesh Pawar; Takuya Kawamura; Yohei Kirino
Source: check_circle
Crossref

Immunostimulatory short non-coding RNAs in the circulation of patients with tuberculosis infection

Molecular Therapy - Nucleic Acids
2024-03 | Journal article
DOI: 10.1016/j.omtn.2024.102156
Contributors: Justin Gumas; Takuya Kawamura; Megumi Shigematsu; Yohei Kirino
Source: check_circle
Crossref

Challenges inherent to the sequencing and quantification of short non‐coding RNAs and how to address them

Clinical and Translational Discovery
2022-06 | Journal article
DOI: 10.1002/ctd2.93
Contributors: Justin Gumas; Yohei Kirino
Source: check_circle
Crossref

Making Invisible RNA Visible: Discriminative Sequencing Methods for RNA Molecules with Specific Terminal Formations

Biomolecules
2022-04-20 | Journal article
DOI: 10.3390/biom12050611
Contributors: Megumi Shigematsu; Yohei Kirino
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Modulation of Aub–TDRD interactions elucidates piRNA amplification and germplasm formation

Life Science Alliance
2021-03 | Journal article
DOI: 10.26508/lsa.202000912
Contributors: Nicholas Vrettos; Manolis Maragkakis; Panagiotis Alexiou; Paraskevi Sgourdou; Fadia Ibrahim; Daniel Palmieri; Yohei Kirino; Zissimos Mourelatos
Source: check_circle
Crossref

Infection-induced 5′-half molecules of tRNAHisGUG activate Toll-like receptor 7

PLOS Biology
2020-12-17 | Journal article
DOI: 10.1371/journal.pbio.3000982
Contributors: Kamlesh Pawar; Mathieu JM Bertrand; Megumi Shigematsu; Soroush Sharbati; Yohei Kirino
Source: check_circle
Crossref

Oxidative stress enhances the expression of 2′,3′-cyclic phosphate-containing RNAs

RNA Biology
2020-08-02 | Journal article
DOI: 10.1080/15476286.2020.1766861
Contributors: Megumi Shigematsu; Yohei Kirino
Source: check_circle
Crossref

Genome-wide identification of short 2′,3′-cyclic phosphate-containing RNAs and their regulation in aging

PLOS Genetics
2019-11-13 | Journal article
DOI: 10.1371/journal.pgen.1008469
Contributors: Megumi Shigematsu; Zissimos Mourelatos; Keisuke Morichika; Takuya Kawamura; Shozo Honda; Yohei Kirino
Source: check_circle
Crossref

RNase 2/EDN cleaves the anticodon loops of tRNAs to produce immunostimulatory tRNA halves in asthma

2019-10-24 | Preprint
DOI: 10.1101/815803
Contributors: Megumi Shigematsu; Takuya Kawamura; Sushrut D. Shah; Deepak A. Deshpande; Yohei Kirino
Source: check_circle
Crossref

YAMAT-seq: An efficient method for high-throughput sequencing of mature transfer RNAs

Nucleic Acids Research
2017 | Journal article
DOI: 10.1093/nar/gkx005
EID:

2-s2.0-85026890781
Contributors: Shigematsu, M.; Honda, S.; Loher, P.; Telonis, A.G.; Rigoutsos, I.; Kirino, Y.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

Crystal structure of the extended Tudor domain from BmPAPI

2017-06 | Other
DOI: 10.2210/pdb5vy1/pdb
Contributors: P.A. Hubbard; X. Pan; R. McNally; A. Ohtaki; S. Honda; Y. Kirino; R. Murali
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search

Crystal structure of the extended Tudor domain from BmPAPI in complex with sDMA

2017-06 | Other
DOI: 10.2210/pdb5vqh/pdb
Contributors: P.A. Hubbard; X. Pan; A. Ohtaki; R. McNally; S. Honda; Y. Kirino; R. Murali
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search

The biogenesis pathway of tRNA-derived piRNAs in Bombyx germ cells

Nucleic Acids Research
2017-06 | Journal article
DOI: 10.1093/nar/gkx537
Contributors: Shozo Honda; Takuya Kawamura; Phillipe Loher; Keisuke Morichika; Isidore Rigoutsos; Yohei Kirino
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search

Increasing cell density globally enhances the biogenesis of Piwi-interacting RNAs in Bombyx mori germ cells

Scientific Reports
2017-06-23 | Journal article
DOI: 10.1038/s41598-017-04429-7
Contributors: Shozo Honda; Phillipe Loher; Keisuke Morichika; Megumi Shigematsu; Takuya Kawamura; Yoriko Kirino; Isidore Rigoutsos; Yohei Kirino
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Systems-Level Analysis Of 32 TCGA Cancers Reveals Disease-Dependent tRNA Fragmentation Patterns And Very Selective Associations With Messenger RNAs And Repeat Elements

2017-05-09 | Other
DOI: 10.1101/135517
Contributors: Isidore Rigoutsos; Aristeidis G. Telonis; Phillipe Loher; Rogan Magee; Yohei Kirino; Venetia Pliatsika
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search

5′-Terminal nucleotide variations in human cytoplasmic tRNAHisGUG and its 5′-halves

RNA
2017-02-22 | Journal article
DOI: 10.1261/rna.058024.116
Contributors: Megumi Shigematsu; Yohei Kirino
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Consequential considerations when mapping tRNA fragments

BMC Bioinformatics
2016 | Journal article
DOI: 10.1186/s12859-016-0921-0
EID:

2-s2.0-84960129858
Contributors: Telonis, A.G.; Loher, P.; Kirino, Y.; Rigoutsos, I.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

Identification and Functional Analysis of the Pre-piRNA 3′ Trimmer in Silkworms

Cell
2016 | Journal article
DOI: 10.1016/j.cell.2016.01.008
EID:

2-s2.0-84959423487
Contributors: Izumi, N.; Shoji, K.; Sakaguchi, Y.; Honda, S.; Kirino, Y.; Suzuki, T.; Katsuma, S.; Tomari, Y.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

Morphological and histomorphological structures of testes and ovaries in early developmental stages of the silkworm, Bombyx mori

Journal of Insect Biotechnology and Sericology
2016 | Journal article
DOI: 10.11416/jibs.85.1_015
EID:

2-s2.0-84964826032
Contributors: Sakai, H.; Kirino, Y.; Katsuma, S.; Aoki, F.; Suzuki, M.G.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

Abstract 2665: SHOT-RNAs: A novel class of tRNA-derived functional RNAs expressed in hormone-dependent cancers

Cancer Research
2016-07 | Journal article
DOI: 10.1158/1538-7445.am2016-2665
Contributors: Shozo Honda; Megumi Shigematsu; Phillipe Loher; Juan P. Palazzo; Issei Imoto; Isidore Rigoutsos; Yohei Kirino
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search

Comments on: "A comprehensive repertoire of tRNA-derived fragments in prostate cancer"

2016-07-07 | Other
DOI: 10.1101/061572
Contributors: Rogan Magee; Phillipe Loher; Aristeidis Telonis; Yohei Kirino; Isidore Rigoutsos
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search

Selective amplification and sequencing of cyclic phosphate–containing RNAs by the cP-RNA-seq method

Nature Protocols
2016-03-11 | Journal article
DOI: 10.1038/nprot.2016.025
Contributors: Shozo Honda; Keisuke Morichika; Yohei Kirino
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies

Oncotarget
2015 | Journal article
DOI: 10.18632/oncotarget.4695
EID:

2-s2.0-84941358900
Contributors: Telonis, A.G.; Loher, P.; Honda, S.; Jing, Y.; Palazzo, J.; Kirino, Y.; Rigoutsos, I.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

tRNA-derived short non-coding RNA as interacting partners of argonaute proteins

Gene Regulation and Systems Biology
2015 | Journal article
DOI: 10.4137/GRSB.S29411
EID:

2-s2.0-84941360926
Contributors: Shigematsu, M.; Kirino, Y.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier
grade
Preferred source (of 2)‎

SHOT-RNAs: A novel class of tRNA-derived functional RNAs expressed in hormone-dependent cancers

Molecular & Cellular Oncology
2015-11 | Journal article
DOI: 10.1080/23723556.2015.1079672
Contributors: Shozo Honda; Yohei Kirino
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search

Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers

Proceedings of the National Academy of Sciences
2015-07-21 | Journal article
DOI: 10.1073/pnas.1510077112
Contributors: Shozo Honda; Phillipe Loher; Megumi Shigematsu; Juan P. Palazzo; Ryusuke Suzuki; Issei Imoto; Isidore Rigoutsos; Yohei Kirino
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Four-leaf clover qRT-PCR: A convenient method for selective quantification of mature transfer RNA.

2015-04 | Journal article
DOI:

10.1080/15476286.2015.1031951

PMID:

25833336
Contributors: Honda S; Shigematsu M; Morichika K; Telonis AG; Kirino Y
Source: Self-asserted source
Yohei Kirino via Europe PubMed Central
grade
Preferred source (of 2)‎

Mitochondrial tRNA-lookalikes in nuclear chromosomes: Could they be functional?

2015-04 | Journal article
DOI:

10.1080/15476286.2015.1017239

PMID:

25849196
Contributors: Telonis AG; Kirino Y; Rigoutsos I
Source: Self-asserted source
Yohei Kirino via Europe PubMed Central
grade
Preferred source (of 2)‎

Dumbbell-PCR: a method to quantify specific small RNA variants with a single nucleotide resolution at terminal sequences

Nucleic Acids Research
2015-03 | Journal article
DOI:

10.1093/nar/gkv218
Contributors: S. Honda; Y. Kirino
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎

Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs

Proc Natl Acad Sci USA
2015-02 | Journal article
DOI:

10.1073/pnas.1420955112
Contributors: Eric Londin; Phillipe Loher; Aristeidis G. Telonis; Kevin Quann; Peter Clark; Yi Jing; Eleftheria Hatzimichael; Yohei Kirino; Shozo Honda; Michelle Lally et al.
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎

Analysis of sDMA modifications of PIWI proteins

Methods in Molecular Biology
2014 | Book
DOI: 10.1007/978-1-62703-694-8-11
EID:

2-s2.0-84891676930
Contributors: Honda, S.; Kirino, Y.; Kirino, Y.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

Nuclear and mitochondrial tRNA-lookalikes in the human genome

Front. Genet.
2014-10-08 | Journal article
DOI:

10.3389/fgene.2014.00344
Contributors: Aristeidis G. Telonis; Phillipe Loher; Yohei Kirino; Isidore Rigoutsos
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎

Transfer RNA as a Source of Small Functional RNA

Journal of Molecular Biology and Molecular Imaging
2014-10-08 | Journal article
Source: Self-asserted source
Yohei Kirino

PIWIL1 (piwi-like RNA-mediated gene silencing 1)

Atlas of Genetics and Cytogenetics in Oncology and Haematology
2013-11 | Journal article
DOI:

10.4267/2042/51873
Contributors: S Honda; Y Kirino
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search

Mitochondrial protein BmPAPI modulates the length of mature piRNAs

RNA
2013-08 | Journal article
DOI:

10.1261/rna.040428.113
Contributors: S. Honda; Y. Kirino; M. Maragkakis; P. Alexiou; A. Ohtaki; R. Murali; Z. Mourelatos; Y. Kirino
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎

PIWI Expression and Function in Cancer

Front. Gene.
2012 | Journal article
DOI:

10.3389/fgene.2012.00204
Contributors: Ryusuke Suzuki; Shozo Honda; Yohei Kirino
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎

Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis

Nat Struct Mol Biol
2012-07 | Journal article
DOI:

10.1038/nsmb.2347
Contributors: Anastassios Vourekas; Qi Zheng; Panagiotis Alexiou; Manolis Maragkakis; Yohei Kirino; Brian D Gregory; Zissimos Mourelatos
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎

Immunoprecipitation of piRNPs and directional, next generation sequencing of piRNAs.

Methods in molecular biology (Clifton, N.J.)
2011 | Journal article
EID:

2-s2.0-80051567721
Contributors: Kirino, Y.; Vourekas, A.; Khandros, E.; Mourelatos, Z.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

The role of arginine methylation in the Piwi-interacting RNA pathway

Seikagaku
2011 | Journal article
EID:

2-s2.0-80052329515
Contributors: Kirino, Y.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

Arginine methylation of vasa protein is conserved across phyla

Journal of Biological Chemistry
2010 | Journal article
DOI: 10.1074/jbc.M109.089821
EID:

2-s2.0-77950895342
Contributors: Kirino, Y.; Vourekas, A.; Kim, N.; De Lima Alves, F.; Rappsilber, J.; Klein, P.S.; Jongens, T.A.; Mourelatos, Z.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

Reversible infantile respiratory chain deficiency: A clinical and molecular study

Ann Neurol.
2010 | Journal article
DOI:

10.1002/ana.22111
Contributors: Masakazu Mimaki; Hideyuki Hatakeyama; Hirofumi Komaki; Mina Yokoyama; Hidee Arai; Yohei Kirino; Tsutomu Suzuki; Ichizo Nishino; Ikuya Nonaka; Yu-ichi Goto
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
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Elective affinities: a Tudor-Aubergine tale of germline partnership

Genes & Development
2010-09 | Journal article
DOI:

10.1101/gad.1977010
Contributors: A. Vourekas; Y. Kirino; Z. Mourelatos
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎

Arginine methylation of Aubergine mediates Tudor binding and germ plasm localization

RNA
2010-01-01 | Journal article
DOI:

10.1261/rna.1869710
Contributors: Y. Kirino; A. Vourekas; N. Sayed; F. de Lima Alves; T. Thomson; P. Lasko; J. Rappsilber; T. A. Jongens; Z. Mourelatos
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎

Arginine methylation of Piwi proteins catalysed by dPRMT5 is required for Ago3 and Aub stability

Nat Cell Biol
2009-05 | Journal article
DOI:

10.1038/ncb1872
Contributors: Yohei Kirino; Namwoo Kim; Mariàngels de Planell-Saguer; Eugene Khandros; Stephanie Chiorean; Peter S. Klein; Isidore Rigoutsos; Thomas A. Jongens; Zissimos Mourelatos
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U·G wobble pairing during decoding

Journal of Biological Chemistry
2008 | Journal article
DOI: 10.1074/jbc.M800233200
EID:

2-s2.0-48349090037
Contributors: Kurata, S.; Weixlbaumer, A.; Ohtsuki, T.; Shimazaki, T.; Wada, T.; Kirino, Y.; Takai, K.; Watanabe, K.; Ramakrishnan, V.; Suzuki, T.
Source: Self-asserted source
Yohei Kirino via Scopus - Elsevier

Site-specific crosslinking of human microRNPs to RNA targets

RNA
2008-08 | Journal article
DOI:

10.1261/rna.1133808
Contributors: Y. Kirino; Z. Mourelatos
Source: Self-asserted source
Yohei Kirino via Crossref Metadata Search
grade
Preferred source (of 2)‎
Items per page:
Page 1 of 2

Peer review (9 reviews for 7 publications/grants)

Review activity for BMC biology. (1)
Review activity for Molecular biology reports. (1)
Review activity for Molecular cell. (1)
Review activity for Molecular therapy. (1)
Review activity for Nature cell biology (1)
Review activity for Nature communications (3)
Review activity for Trends in biochemical sciences. (1)
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