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Employment (1)

James Hutton Institute: Dundee, Dundee, GB

2011-04-01 to present | Computational Biologist (Information and Computational Sciences)
Employment
Source: Self-asserted source
Runxuan Zhang

Education and qualifications (1)

Nanyang Technological University: Singapore, Singapore, SG

2002-08 to 2007-01 | PhD
Education
Source: Self-asserted source
Runxuan Zhang

Works (50 of 51)

Items per page:
Page 1 of 2

Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing

Plant Circadian Networks
2022 | Book chapter
Source: Self-asserted source
Runxuan Zhang

The proteome of developing barley anthers during meiotic prophase I

Journal of experimental botany
2022 | Journal article
Source: Self-asserted source
Runxuan Zhang

The value of genotype-specific reference for transcriptome analyses in barley

Life science alliance
2022 | Journal article
Source: Self-asserted source
Runxuan Zhang

3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

RNA biology
2021 | Journal article
Source: Self-asserted source
Runxuan Zhang

A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

bioRxiv
2021 | Journal article
Source: Self-asserted source
Runxuan Zhang

Analysis of Multiple Years of RNA-Seq Data Using the 3D-RNA-Seq Application Reveals Seasonal Signatures of Differential Gene and Transcript-Level Expression, Alternative-Splicing, and Transcript...

2021 | Journal article
Source: Self-asserted source
Runxuan Zhang

BaRTv2: A highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification

BioRxiv
2021 | Journal article
Source: Self-asserted source
Runxuan Zhang

Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors

Journal of Experimental Botany
2021 | Journal article
Source: Self-asserted source
Runxuan Zhang

Differential nucleosome occupancy modulates alternative splicing in Arabidopsis thaliana

New Phytologist
2021 | Journal article
Source: Self-asserted source
Runxuan Zhang

ProtView: A versatile tool for in silico protease evaluation and selection in a proteomic and proteogenomic context

bioRxiv
2021 | Journal article
Source: Self-asserted source
Runxuan Zhang

The value of genotype-specific reference for transcriptome analyses

bioRxiv
2021 | Journal article
Source: Self-asserted source
Runxuan Zhang

A powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

bioRxiv
2020 | Journal article
Source: Self-asserted source
Runxuan Zhang

Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility

PLoS Pathogens
2020 | Journal article
Source: Self-asserted source
Runxuan Zhang

Illuminating the dark side of the human transcriptome with long read transcript sequencing

BMC genomics
2020 | Journal article
Source: Self-asserted source
Runxuan Zhang

Nonsense-mediated RNA decay factor UPF1 is critical for posttranscriptional and translational gene regulation in Arabidopsis

Plant Cell
2020 | Journal article
Source: Self-asserted source
Runxuan Zhang

TranSuite: A software suite for accurate translation and characterization of transcripts

BioRxiv
2020 | Journal article
Source: Self-asserted source
Runxuan Zhang

Application of a sensitive and reproducible label-free proteomic approach to explore the proteome of individual meiotic-phase barley anthers

Frontiers in Plant Science
2019 | Journal article
Source: Self-asserted source
Runxuan Zhang

BaRTv1. 0: a barley reference transcript dataset for quantitative measurement barley transcriptomes using RNA-seq.

BMC Genomics, 20, Article No. 968.
2019 | Journal article
Source: Self-asserted source
Runxuan Zhang

BaRTv1. 0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

BMC genomics
2019 | Journal article
Source: Self-asserted source
Runxuan Zhang

Cold-dependent expression and alternative splicing of Arabidopsis long non-coding RNAs

Frontiers in Plant Science
2019 | Journal article
Source: Self-asserted source
Runxuan Zhang

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)

Plant, cell & environment
2018 | Journal article
Source: Self-asserted source
Runxuan Zhang

Potato miR828 is associated with purple tuber skin and flesh color

Frontiers in plant science
2018 | Journal article
Source: Self-asserted source
Runxuan Zhang

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

The Plant Cell
2018 | Journal article
Source: Self-asserted source
Runxuan Zhang

The Expressed Portion of the Barley Genome

The Barley Genome
2018 | Book chapter
Source: Self-asserted source
Runxuan Zhang

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

Nucleic acids research
2017 | Journal article
Source: Self-asserted source
Runxuan Zhang

Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility

Nature Communications
2017 | Journal article
Source: Self-asserted source
Runxuan Zhang

Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size

BMC systems biology
2017 | Journal article
Source: Self-asserted source
Runxuan Zhang

High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants

New Phytologist
2017 | Journal article
Source: Self-asserted source
Runxuan Zhang

TSIS: an R package to infer alternative splicing isoform switches for time-series data

Bioinformatics
2017 | Journal article
Source: Self-asserted source
Runxuan Zhang

AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data

BioRxiv
2016 | Journal article
Source: Self-asserted source
Runxuan Zhang

Insight on genes affecting tuber development in potato upon potato spindle tuber viroid (PSTVd) infection

PLoS One
2016 | Journal article
Source: Self-asserted source
Runxuan Zhang

The dynamics of transcript abundance during cellularization of developing barley endosperm

Plant Physiology
2016 | Journal article
Source: Self-asserted source
Runxuan Zhang

At RTD--a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana

New Phytologist
2015 | Journal article
Source: Self-asserted source
Runxuan Zhang

In silico identification and characterization of conserved plant microRNAs in barley

Open Life Sciences
2014 | Journal article
Source: Self-asserted source
Runxuan Zhang

Physiological, biochemical and molecular responses of the potato (S olanum tuberosum L.) plant to moderately elevated temperature

Plant, cell & environment
2014 | Journal article
Source: Self-asserted source
Runxuan Zhang

Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing

PLoS One
2013 | Journal article
Source: Self-asserted source
Runxuan Zhang

Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle

Genome biology
2013 | Journal article
Source: Self-asserted source
Runxuan Zhang

Evaluation for computational platforms of LC-MS based label-free quantitative proteomics: A global view

Journal of Proteomics and Bioinformatics
2010 | Journal article
Source: Self-asserted source
Runxuan Zhang

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function

Genome research
2009 | Journal article
Source: Self-asserted source
Runxuan Zhang

Alignment of LC-MS images, with applications to biomarker discovery and protein identification

Proteomics
2008 | Journal article
Source: Self-asserted source
Runxuan Zhang

Comprehensive proteome analysis of Mycobacterium ulcerans and quantitative comparison of mycolactone biosynthesis

Proteomics
2008 | Journal article
Source: Self-asserted source
Runxuan Zhang

Improved GAP-RBF network for classification problems

Neurocomputing
2007 | Journal article
Source: Self-asserted source
Runxuan Zhang

Multicategory classification using an extreme learning machine for microarray gene expression cancer diagnosis

IEEE/ACM transactions on Computational Biology and Bioinformatics
2007 | Journal article
Source: Self-asserted source
Runxuan Zhang

Multicategory Classification Using An Extreme Learning Machine for Microarray Gene Expression Cancer Diagnosis

IEEE/ACM Transactions on Computational Biology and Bioinformatics
2007-07 | Journal article
DOI: 10.1109/tcbb.2007.1012
Part of ISSN: 1545-5963
Contributors: Runxuan Zhang; G.-B. Huang; N. Sundararajan; P. Saratchandran
Source: Self-asserted source
Runxuan Zhang via Crossref Metadata Search

An Efficient Sequential RBF Network for Gene Expression-Based Multi-category classification

2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology
2005 | Other
DOI: 10.1109/cibcb.2005.1594925
Contributors: Runxuan Zhang; N. Sundararajan; Guang-Bin Huang; P. Saratchandran
Source: Self-asserted source
Runxuan Zhang via Crossref Metadata Search

An Efficient Sequential RBF Network for Gene Expression-Based Multi-category classification

2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology
2005 | Conference paper
Source: Self-asserted source
Runxuan Zhang

Efficient sequential and batch learning artificial neural network methods for classification problems

Singapore
2005 | Journal article
Source: Self-asserted source
Runxuan Zhang

Efficient sequential and batch learning artificial neural network methods for classification problems

2005 | Dissertation or Thesis
Source: Self-asserted source
Runxuan Zhang

An efficient sequential RBF network for bio-medical classification problems

2004 IEEE International Joint Conference on Neural Networks (IEEE Cat. No. 04CH37541)
2004 | Conference paper
Source: Self-asserted source
Runxuan Zhang

An Independent Component Analysis based on signal separation method for evoked potentials

Journal of Dalian Railway Institute
2002 | Journal article
Source: Self-asserted source
Runxuan Zhang
Items per page:
Page 1 of 2

Peer review (8 reviews for 5 publications/grants)

Review activity for BMC plant biology (1)
Review activity for F1000Research. (1)
Review activity for Genome biology. (2)
Review activity for The plant cell. (1)
Review activity for UK Research and Innovation (3)
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