Personal information

Emails & domains

Verified email domains

Websites & social links

Københavns Universitet profile page

Other IDs

ResearcherID: G-4892-2018
Scopus Author ID: 56494850400
Scopus Author ID: 56494850400

Keywords

plant-microbe interactions, Microbial Ecology, Microbial Phosphorous cycling, Soil Microbiology

Activities

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Employment (5)

Københavns Universitet: København K, DK

Employment
Source: check_circle
University of Copenhagen

University of Copenhagen: Frederiksberg, Copenhagen, DK

2023-04-01 to present | Assistant Professor (Plant and Environmental Sciences)
Employment
Source: Self-asserted source
Frederik Bak

Austrian Institute of Technology GmbH Center for Health & Bioresources: Tulln, Niederösterreich, AT

2023-02-01 to 2025-01-24 | Postdoc
Employment
Source: Self-asserted source
Frederik Bak

University of Copenhagen: Frederiksberg, Copenhagen, DK

2019-04-01 to 2023-03-31 | Postdoc (Plant and Environmental Sciences)
Employment
Source: Self-asserted source
Frederik Bak

De Nationale Geologiske Undersøgelser for Danmark og Grønland: Kobenhavn, Kobenhavn, DK

2016-02 to 2019-03 | PhD student (Geochemistry)
Employment
Source: Self-asserted source
Frederik Bak

Education and qualifications (3)

University of Copenhagen: Copenhagen, DK

2016-02-01 to 2019-06-03 | PhD (Plant and Environmental Sciences)
Education
Source: Self-asserted source
Frederik Bak

University of Copenhagen: Copenhagen, DK

2011-09-01 to 2013-10-23 | M.Sc. (Plant and Environmental Sciences)
Education
Source: Self-asserted source
Frederik Bak

University of Copenhagen: Copenhagen, DK

2007-09-01 to 2011-05-31 | B.Sc. (Chemistry)
Education
Source: Self-asserted source
Frederik Bak

Funding (2)

Disentangling the controlling factors for nitrogen fixation by free-living bacteria in the wheat rhizosphere

2022-09-09 to present | Grant
Danish Agency for Science and Higher Education (Copenhagen, DK)
URL: https://app.dimensions.ai/details/grant/grant.13062683
GRANT_NUMBER: project-disentangling-the-controlling-factors-for-nitrogen-2022-09-09
Source: Self-asserted source
Frederik Bak via DimensionsWizard

A genome-based analysis of factors driving assembly of pesticide-degrading bacterial communities in soil macropore hot-spots (GENOPORE)

2015-01-01 to 2015-12-31 | Grant
Danish Agency for Science and Higher Education (Copenhagen, DK)
URL: https://app.dimensions.ai/details/grant/grant.7149094
GRANT_NUMBER: afb5422b5729422fed649f186eef3557
Source: Self-asserted source
Frederik Bak via DimensionsWizard

Works (25)

Microbial life in preferential flow paths in subsurface clayey till revealed by metataxonomy and metagenomics

BMC Microbiology
2024 | Journal article | Author
DOI: 10.1186/s12866-024-03432-z
SOURCE-WORK-ID:

74128ccb-4ea9-407a-966f-dbfd4e348af0

EID:

2-s2.0-85200912368

PMID: 39123130
WOSUID:

001288266900002
Contributors: Frederik Bak; Christoph Keuschnig; Ole Nybroe; Jens Aamand; Peter R. Jørgensen; Mette Haubjerg Nicolaisen; Timothy M. Vogel; Catherine Larose
Source: check_circle
University of Copenhagen

The potential of Pseudomonas fluorescens SBW25 to produce viscosin enhances wheat root colonization and shapes root-associated microbial communities in a plant genotype-dependent manner in soil systems

mSphere
2024 | Journal article | Author
DOI: 10.1128/msphere.00294-24
SOURCE-WORK-ID:

0cb78af7-9e54-4c9a-a5c4-9e047e42f7ef

PMID: 38904362
EID:

2-s2.0-85200170008
Contributors: Ying Guan; Frederik Bak; Rosanna C. Hennessy; Courtney Horn Herms; Christine Lorenzen Elberg; Dorte Bodin Dresbøll; Anne Winding; Rumakanta Sapkota; Mette Haubjerg Nicolaisen
Source: check_circle
University of Copenhagen

Fulvic Acid Enhances Nitrogen Fixation and Retention in Paddy Soils through Microbial-Coupled Carbon and Nitrogen Cycling

Environmental Science & Technology
2024-10-22 | Journal article
DOI: 10.1021/acs.est.4c07616
Contributors: Shudan Xue; Xingyun Yi; Jingjing Peng; Frederik Bak; Limei Zhang; Guilan Duan; Werner Liesack; Yongguan Zhu
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Linking microbial community structure with function using amplicon sequencing of NRPS genes associated with wheat roots under drought stress

2024-08-29 | Preprint
DOI: 10.1101/2024.08.28.609728
Contributors: Ying Guan; Edmond Berne; Rosanna Catherine Hennessy; Paolina Garbeva; Mette Haubjerg Nicolaisen; Frederik Bak
Source: check_circle
Crossref

Pseudomonastaxonomic and functional microdiversity in the wheat rhizosphere is cultivar- dependent and links to disease resistance profile and root diameter

2024-06-14 | Preprint
DOI: 10.1101/2024.06.13.598955
Contributors: Courtney Horn Herms; Rosanna Catherine Hennessy; Frederik Bak; Ying Guan; Patrick Denis Browne; Tue Kjærgaard Nielsen; Lars Hestbjerg Hansen; Dorte Bodin Dresbøll; Mette Haubjerg Nicolaisen
Source: check_circle
Crossref

Differential impacts of sewage sludge and biochar on phosphorus-related processes

Science of the Total Environment
2023 | Journal article | Author
DOI: 10.1016/j.scitotenv.2023.166888
SOURCE-WORK-ID:

1232357b-8395-4240-8c86-32f2bf4e2c5d

EID:

2-s2.0-85171536212

PMID: 37730064
Contributors: Marie Louise Bornø; Athanasios Zervas; Frederik Bak; Theresa Merl; Klaus Koren; Mette Haubjerg Nicolaisen; Lars Stoumann Jensen; Dorette Sophie Müller-Stöver
Source: check_circle
University of Copenhagen

Four novel Curtobacterium phages isolated from environmental samples

Archives of Virology
2023 | Journal article | Author
DOI: 10.1007/s00705-023-05706-9
SOURCE-WORK-ID:

0eb952e4-b955-4e7a-aef6-cf6d34657c6d

PMID: 36786922
WOSUID:

000933494800005

EID:

2-s2.0-85148076204
Contributors: Katrine Wacenius Skov Alanin; Nikoline S. Olsen; Amaru Miranda Djurhuus; Alexander Byth Carstens; Tue Nielsen; Magnus Mulbjerg Rothgardt; Andreas Marieboe Russel; Natalia Wagner; René Lametsch; Frederik Bak et al.
Source: check_circle
University of Copenhagen

Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids

Infection, Genetics and Evolution
2023 | Journal article | Author
DOI: 10.1016/j.meegid.2023.105486
SOURCE-WORK-ID:

551b52ad-11c2-4d51-8fd4-18cd84bc94f1

EID:

2-s2.0-85166959238

PMID: 37541538
WOSUID:

001092409900001
Contributors: Tue Nielsen; Caroline S. Winther-Have; Iben Margrete Thomsen; Robert W. Jackson; Mojgan Rabiey; Rosanna C. Hennessy; Frederik Bak; Witold Kot; Mette Haubjerg Nicolaisen; Alexander Byth Carstens et al.
Source: check_circle
University of Copenhagen

Three novel Erwinia billingiae phages isolated from organic waste represent three new genera

Archives of Virology
2023 | Journal article | Author
DOI: 10.1007/s00705-023-05700-1
SOURCE-WORK-ID:

fa17a52a-50d7-4d4b-a01d-a2aeb7089100

PMID: 36658443
WOSUID:

000918821900003

EID:

2-s2.0-85146576877
Contributors: Katrine Wacenius Skov Alanin; Nikoline S Olsen; Amaru Miranda Djurhuus; Alexander Byth Carstens; Tue Nielsen; Natalia Wagner; René Lametsch; Frederik Bak; Rosanna C. Hennessy; Mette Haubjerg Nicolaisen et al.
Source: check_circle
University of Copenhagen

Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota

FEMS Microbiology Ecology
2023-08-22 | Journal article
DOI: 10.1093/femsec/fiad091
Contributors: Olivera Topalović; Frederik Bak; Susana Santos; Md Maniruzzaman Sikder; Rumakanta Sapkota; Flemming Ekelund; Mette Haubjerg Nicolaisen; Mette Vestergård
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Enzyme activity profiling for physiological phenotyping within functional phenomics

Journal of Experimental Botany
2022 | Journal article | Author
DOI: 10.1093/jxb/erac215
SOURCE-WORK-ID:

ed049a3c-693d-49be-8bf1-5a45c9432ad8

PMID: 35675172
WOSUID:

000839497600001

EID:

2-s2.0-85149126918
Contributors: Alexandra Jammer; Saqib Saleem Akhtar; Daniel Buchvaldt Amby; Chandana Pandey; Mengistu F Mekureyaw; Frederik Bak; Peter M Roth; Thomas Georg Roitsch
Source: check_circle
University of Copenhagen
grade
Preferred source (of 2)‎

Draft Genome Sequences of Phytase Active Endophytic and Epiphytic Erwinia gerundensis Isolated from Wheat (Triticum aestivum) Seeds.

Microbiology resource announcements
2022-12-07 | Journal article | Author
DOI: 10.1128/mra.01073-22
PMID: 36475734
Contributors: Sølve J; Tue Nielsen; Mette Haubjerg Nicolaisen; Frederik Bak
Source: Self-asserted source
Frederik Bak
grade
Preferred source (of 3)‎

Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties.

Microbiology resource announcements
2022-04 | Journal article
DOI: 10.1128/mra.00222-22
PMID: 35416691
Contributors: Zervas A; Ellegaard-Jensen L; Hennessy RC; Bak F; Guan Y; Horn Herms C; Molina Zamudio KY; Thybo Ganzhorn D; Müller-Stöver DS; Ahmad J et al.
Source: Self-asserted source
Frederik Bak via Europe PubMed Central
grade
Preferred source (of 4)‎

Deep-rooted perennial crops differ in capacity to stabilize C inputs in deep soil layers

Scientific Reports
2022-04-08 | Journal article
DOI: 10.1038/s41598-022-09737-1
SOURCE-WORK-ID:

cda9234a-bb36-4033-9577-14e82d944225

Part of ISSN: 2045-2322
Source: Self-asserted source
Frederik Bak
grade
Preferred source (of 3)‎

Succession of the wheat seed-associated microbiome as affected by soil fertility level and introduction of Penicillium and Bacillus inoculants in the field.

FEMS microbiology ecology
2022-03 | Journal article
DOI: 10.1093/femsec/fiac028
PMID: 35285907
Contributors: Nunes I; Hansen V; Bak F; Bonnichsen L; Su J; Hao X; Raymond NS; Nicolaisen MH; Jensen LS; Nybroe O
Source: Self-asserted source
Frederik Bak via Europe PubMed Central
grade
Preferred source (of 2)‎

Deep-rooted plant species recruit distinct bacterial communities in subsoil than in topsoil

Phytobiomes Journal
2022-03-14 | Journal article
DOI: 10.1094/pbiomes-10-21-0064-r
Part of ISSN: 2471-2906
Source: Self-asserted source
Frederik Bak
grade
Preferred source (of 2)‎

Back to our roots: exploring the role of root morphology as a mediator of beneficial plant-microbe interactions.

Environmental microbiology
2022-02 | Journal article
DOI: 10.1111/1462-2920.15926
PMID: 35106901
Contributors: Herms CH; Hennessy RC; Bak F; Dresbøll DB; Nicolaisen MH
Source: Self-asserted source
Frederik Bak via Europe PubMed Central
grade
Preferred source (of 3)‎

Complete Genome Sequence of a Novel Dyadobacter sp. Strain, NIV53, Isolated from 2-Meter Deep Subsurface Sediment

Microbiology Resource Announcements
2021-11-04 | Journal article
DOI: 10.1128/mra.00754-21
Part of ISSN: 2576-098X
Source: Self-asserted source
Frederik Bak
grade
Preferred source (of 4)‎

Deep-rooted plant species recruit distinct bacterial communities in 3 m deep subsoil

2021-06-02 | Preprint
DOI: 10.1101/2021.06.02.446747
Contributors: Frederik Bak; Annemette Lyhne-Kjærbye; Stacie Tardif; Dorte Bodin Dresbøll; Mette H. Nicolaisen
Source: check_circle
Crossref

Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities

Frontiers in Microbiology
2020 | Journal article | Author
DOI: 10.3389/fmicb.2020.01045
SOURCE-WORK-ID:

aa6c571b-5a45-449d-b078-178d3d35129a

EID:

2-s2.0-85086152397

PMID: 32528445
WOSUID:

000540817000001
Contributors: Andrea Cavalieri; Frederik Bak; Adriana Garcia; Jacob Weiner; Mette Haubjerg Nicolaisen; Ole Nybroe
Source: check_circle
University of Copenhagen
grade
Preferred source (of 2)‎

Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile

Applied and environmental microbiology
2019 | Journal article
DOI: 10.1128/AEM.02658-18
EID:

2-s2.0-85062608774
Contributors: Krüger, U.S.; Dechesne, A.; Bak, F.; Badawi, N.; Nybroe, O.; Aamand, J.
Source: Self-asserted source
Frederik Bak via Scopus - Elsevier
grade
Preferred source (of 3)‎

Microbiota in preferential flow paths

2019 | Dissertation or Thesis | Author
SOURCE-WORK-ID:

f361ffbf-cf21-47e2-bdb9-0ddf08bc33b1
Contributors: Frederik Bak
Source: check_circle
University of Copenhagen

Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile

FEMS Microbiology Ecology
2019-01 | Journal article
DOI: 10.1093/femsec/fiz008
Source: Self-asserted source
Frederik Bak
grade
Preferred source (of 4)‎

Novel method reveals a narrow phylogenetic distribution of bacterial dispersers in environmental communities exposed to low hydration conditions.

Applied and environmental microbiology
2018 | Journal article
DOI: 10.1128/AEM.02857-17
WOSUID:

MEDLINE:29374034
Contributors: Kruger, U S; Bak, F; Aamand, J; Nybroe, O; Badawi, N; Smets, B F; Dechesne, A
Source: Self-asserted source
Frederik Bak via ResearcherID
grade
Preferred source (of 4)‎

The biosurfactant viscosin transiently stimulates n-hexadecane mineralization by a bacterial consortium

Applied Microbiology and Biotechnology
2015 | Journal article
DOI: 10.1007/s00253-014-6054-3
WOSUID:

WOS:000348771400038
Contributors: Bak, Frederik; Bonnichsen, Lise; Jorgensen, Niels O. G.; Nicolaisen, Mette H.; Nybroe, Ole
Source: Self-asserted source
Frederik Bak via ResearcherID
grade
Preferred source (of 4)‎

Peer review (9 reviews for 8 publications/grants)

Review activity for Canadian journal of microbiology. (2)
Review activity for Environmental microbiology. (1)
Review activity for Environmental microbiome. (1)
Review activity for FEMS microbiology ecology. (1)
Review activity for ISME communications. (1)
Review activity for mSphere. (1)
Review activity for Plant and soil. (1)
Review activity for Science of the total environment. (1)
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