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ResearcherID: I-7241-2013
Scopus Author ID: 55860134900

Countries

Czech Republic

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Employment (3)

Recursion: Oxford, Oxfordshire, GB

2024-11-20 to present | Senior Structural Bioinformatics Scientist
Employment
Source: Self-asserted source
Lukáš Pravda

Exscientia: Oxford, Oxfordshire, GB

2021-09-01 to 2024-11-19 | Senior Structural Bioinformatics Scientist
Employment
Source: Self-asserted source
Lukáš Pravda

European Bioinformatics Institute: Cambridge, Cambridgeshire, GB

2017-11-01 to 2021-08-31 | Bioinformatician (Protein Data Bank)
Employment
Source: Self-asserted source
Lukáš Pravda

Education and qualifications (4)

Masarykova Univerzita Přírodovědecká Fakulta: Brno, CZ

2012-09 to 2018-05 | Ph.D. (National Centre for Biomolecular Research)
Education
Source: Self-asserted source
Lukáš Pravda

Masarykova Univerzita Přírodovědecká Fakulta: Brno, CZ

2016-02-08 to 2016-02-08 | RNDr. in Biomolecular Chemistry (National Centre for Biomolecular Research)
Education
Source: Self-asserted source
Lukáš Pravda

Masarykova Univerzita Fakulta Informatiky: Brno, CZ

2010-07-01 to 2012-06-30 | Mgr. (M.Sc. equivallent) in Bioinformatics
Education
Source: Self-asserted source
Lukáš Pravda

Masarykova Univerzita Fakulta Informatiky: Brno, CZ

2007-09-01 to 2010-06-30 | Bc. (B.Sc. equivallent) in Bioinformatics
Education
Source: Self-asserted source
Lukáš Pravda

Works (17)

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data

Bioinformatics
2021-11-05 | Journal article
DOI: 10.1093/bioinformatics/btab424
Contributors: Sreenath Nair; Mihály Váradi; Nurul Nadzirin; Lukáš Pravda; Stephen Anyango; Saqib Mir; John Berrisford; David Armstrong; Aleksandras Gutmanas; Sameer Velankar et al.
Source: check_circle
Crossref

PDBe: improved findability of macromolecular structure data in the PDB.

Nucleic acids research
2019-11 | Journal article
DOI: 10.1093/nar/gkz990
PMID: 31691821
Contributors: Armstrong DR; Berrisford JM; Conroy MJ; Gutmanas A; Anyango S; Choudhary P; Clark AR; Dana JM; Deshpande M; Dunlop R et al.
Source: Self-asserted source
Lukáš Pravda via Europe PubMed Central

PDBe-KB: a community-driven resource for structural and functional annotations.

Nucleic acids research
2019-10 | Journal article
DOI: 10.1093/nar/gkz853
PMID: 31584092
Contributors: PDBe-KB consortium
Source: Self-asserted source
Lukáš Pravda via Europe PubMed Central

Finding enzyme cofactors in Protein Data Bank

Bioinformatics
2019-02-13 | Journal article
DOI: 10.1093/bioinformatics/btz115
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Lukáš Pravda

Protein Data Bank: the single global archive for 3D macromolecular structure data.

Nucleic acids research
2019-01 | Journal article
DOI: 10.1093/nar/gky949
PMID: 30357364
Contributors: wwPDB consortium
Source: Self-asserted source
Lukáš Pravda via Europe PubMed Central

MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update).

Nucleic acids research
2018-07 | Journal article
DOI: 10.1093/nar/gky309
PMID: 29718451
PMC: PMC6030847
Contributors: Pravda L; Sehnal D; Toušek D; Navrátilová V; Bazgier V; Berka K; Svobodová Vareková R; Koca J; Otyepka M
Source: Self-asserted source
Lukáš Pravda via Europe PubMed Central

LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

Nature Methods
2017-12-30 | Journal article
DOI: 10.1038/nmeth.4499
Contributors: David Sehnal; Mandar Deshpande; Radka Svobodová Vařeková; Saqib Mir; Karel Berka; Adam Midlik; Lukáš Pravda; Sameer Velankar; Jaroslav Koča
Source: check_circle
Crossref

ChannelsDB: database of biomacromolecular tunnels and pores.

Nucleic acids research
2017-10 | Journal article
DOI: 10.1093/nar/gkx868
PMID: 29036719
Source: Self-asserted source
Lukáš Pravda via Europe PubMed Central

PDBsum: Structural summaries of PDB entries.

Protein science : a publication of the Protein Society
2017-09 | Journal article
DOI: 10.1002/pro.3289
PMID: 28875543
Source: Self-asserted source
Lukáš Pravda via Europe PubMed Central

The diversity of yellow-related proteins in sand flies (Diptera: Psychodidae)

PLoS ONE
2016 | Journal article
DOI: 10.1371/journal.pone.0166191
EID:

2-s2.0-84994235642
Contributors: Sima, M.; Novotny, M.; Pravda, L.; Sumova, P.; Rohousova, I.; Volf, P.
Source: Self-asserted source
Lukáš Pravda via Scopus - Elsevier

The eighth central european conference "chemistry towards biology": Snapshot

Molecules
2016 | Journal article
DOI: 10.3390/molecules21101381
EID:

2-s2.0-84992398709
Contributors: Perczel, A.; Atanasov, A.G.; Sklenář, V.; Nováček, J.; Papoušková, V.; Kadeřávek, P.; Žídek, L.; Kozłowski, H.; Wątły, J.; Hecel, A. et al.
Source: Self-asserted source
Lukáš Pravda via Scopus - Elsevier
grade
Preferred source (of 2)‎

AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules

Journal of Cheminformatics
2015 | Journal article
DOI: 10.1186/s13321-015-0099-x
WOSUID:

WOS:000363291500001
Contributors: Ionescu, Crina-Maria; Sehnal, David; Falginella, Francesco L.; Pant, Purbaj; Pravda, Lukas; Bouchal, Tomas; Varekova, Radka Svobodova; Geidl, Stanislav; Koca, Jaroslav
Source: Self-asserted source
Lukáš Pravda via ResearcherID
grade
Preferred source (of 2)‎

PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank

Nucleic Acids Research
2015 | Journal article
DOI: 10.1093/nar/gkv561
WOSUID:

WOS:000359772700060
Contributors: Sehnal, David; Pravda, Lukas; Varekova, Radka Svobodova; Ionescu, Crina-Maria; Koca, Jaroslav
Source: Self-asserted source
Lukáš Pravda via ResearcherID
grade
Preferred source (of 2)‎

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

Nucleic Acids Research
2015 | Journal article
DOI: 10.1093/nar/gku1118
WOSUID:

WOS:000350210400057
Contributors: Sehnal, David; Varekova, Radka Svobodova; Pravda, Lukas; Ionescu, Crina-Maria; Geidl, Stanislav; Horsky, Vladimir; Jaiswal, Deepti; Wimmerova, Michaela; Koca, Jaroslav
Source: Self-asserted source
Lukáš Pravda via ResearcherID
grade
Preferred source (of 2)‎

Anatomy of enzyme channels

Bmc Bioinformatics
2014 | Journal article
DOI: 10.1186/s12859-014-0379-x
WOSUID:

WOS:000345944500002
Contributors: Pravda, Lukas; Berka, Karel; Varekova, Radka Svobodova; Sehnal, David; Banas, Pavel; Laskowski, Roman A.; Koca, Jaroslav; Otyepka, Michal
Source: Self-asserted source
Lukáš Pravda via ResearcherID
grade
Preferred source (of 2)‎

MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes

Nucleic Acids Research
2014 | Journal article
DOI: 10.1093/nar/gku426
WOSUID:

WOS:000339715000038
Contributors: Varekova, Radka Svobodova; Jaiswal, Deepti; Sehnal, David; Ionescu, Crina-Maria; Geidl, Stanislav; Pravda, Lukas; Horsky, Vladimir; Wimmerova, Michaela; Koca, Jaroslav
Source: Self-asserted source
Lukáš Pravda via ResearcherID
grade
Preferred source (of 2)‎

MOLE 2.0: advanced approach for analysis of biomacromolecular channels

Journal of Cheminformatics
2013 | Journal article
DOI: 10.1186/1758-2946-5-39
WOSUID:

WOS:000324125500001
Contributors: Sehnal, David; Varekova, Radka Svobodova; Berka, Karel; Pravda, Lukas; Navratilova, Veronika; Banas, Pavel; Ionescu, Crina-Maria; Otyepka, Michal; Koca, Jaroslav
Source: Self-asserted source
Lukáš Pravda via ResearcherID
grade
Preferred source (of 2)‎

Peer review (1 review for 1 publication/grant)

Review activity for BMC bioinformatics (1)
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