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Works (16)

PDBImages: a command-line tool for automated macromolecular structure visualization

Bioinformatics
2023-12-01 | Journal article
DOI: 10.1093/bioinformatics/btad744
Contributors: Adam Midlik; Sreenath Nair; Stephen Anyango; Mandar Deshpande; David Sehnal; Mihaly Varadi; Sameer Velankar; Xin Gao
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Crossref

Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data

2023-05-15 | Preprint
DOI: 10.1101/2023.05.15.540692
Contributors: Sri Devan Appasamy; John Berrisford; Romana Gaborova; Sreenath Nair; Stephen Anyango; Sergei Grudinin; Mandar Deshpande; David Armstrong; Ivanna Pidruchna; Joseph I. J. Ellaway et al.
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Crossref

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

GigaScience
2022-11-30 | Journal article
DOI: 10.1093/gigascience/giac118
Contributors: Mihaly Varadi; Sreenath Nair; Ian Sillitoe; Gerardo Tauriello; Stephen Anyango; Stefan Bienert; Clemente Borges; Mandar Deshpande; Tim Green; Demis Hassabis et al.
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Crossref

PDBe and PDBe-KB: Providing high-quality, up-to-date and integrated resources of macromolecular structures to support basic and applied research and education.

Protein science : a publication of the Protein Society
2022-10 | Journal article
DOI: 10.1002/pro.4439
PMID: 36173162
PMC: PMC9517934
Contributors: Varadi M; Anyango S; Appasamy SD; Armstrong D; Bage M; Berrisford J; Choudhary P; Bertoni D; Deshpande M; Leines GD et al.
Source: Self-asserted source
Sreenath Nair via Europe PubMed Central

Comprehensive Collection and Prediction of ABC Transmembrane Protein Structures in the AI Era of Structural Biology

International Journal of Molecular Sciences
2022-08 | Journal article | Author
DOI: 10.3390/ijms23168877
Contributors: Hedvig Tordai; Erzsébet Suhajda; Ian Sillitoe; Sreenath Nair; Mihaly Varadi; Tamás Hegedűs
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Multidisciplinary Digital Publishing Institute
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Preferred source (of 2)‎

3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

2022-08-03 | Preprint
DOI: 10.1101/2022.08.01.501973
Contributors: Mihaly Varadi; Sreenath Nair; Ian Sillitoe; Gerardo Tauriello; Stephen Anyango; Stefan Bienert; Clemente Borges; Mandar Deshpande; Tim Green; Demis Hassabis et al.
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Crossref

Comprehensive collection and prediction of ABC transmembrane protein structures in the AI era of structural biology

2022-07 | Preprint
DOI: 10.1101/2022.07.08.499254
PPR: PPR516298
Contributors: Tordai H; Suhajda E; Sillitoe I; Nair S; Varadi M; Hegedus T
Source: Self-asserted source
Sreenath Nair via Europe PubMed Central
grade
Preferred source (of 2)‎

PDB ProtVista: A reusable and open-source sequence feature viewer

2022-07-22 | Preprint
DOI: 10.1101/2022.07.22.500790
Contributors: Mandar Deshpande; Mihaly Varadi; Typhaine Paysan-Lafosse; Sreenath Nair; Damiano Piovesan; Saqib Mir; Aleksandras Gutmanas; Silvio C. E. Tosatto; Sameer Velankar
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Crossref

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.

Nucleic acids research
2022-01 | Journal article
DOI: 10.1093/nar/gkab1061
PMID: 34791371
PMC: PMC8728224
Contributors: Varadi M; Anyango S; Deshpande M; Nair S; Natassia C; Yordanova G; Yuan D; Stroe O; Wood G; Laydon A et al.
Source: Self-asserted source
Sreenath Nair via Europe PubMed Central

PDBe-KB: collaboratively defining the biological context of structural data.

Nucleic acids research
2022-01 | Journal article
DOI: 10.1093/nar/gkab988
PMID: 34755867
PMC: PMC8728252
Contributors: PDBe-KB consortium
Source: Self-asserted source
Sreenath Nair via Europe PubMed Central

PDBe Aggregated API: Programmatic access to an integrative knowledge graph of molecular structure data.

Bioinformatics (Oxford, England)
2021-06 | Journal article
DOI: 10.1093/bioinformatics/btab424
PMID: 34081107
PMC: PMC8570819
Contributors: Nair S; Váradi M; Nadzirin N; Pravda L; Anyango S; Mir S; Berrisford J; Armstrong D; Gutmanas A; Velankar S
Source: Self-asserted source
Sreenath Nair via Europe PubMed Central

PDBe Graph Database: An integrative knowledge graph for structural data (Webinar)
Source: Self-asserted source
Sreenath Nair

PDBe: improved findability of macromolecular structure data in the PDB.

Nucleic acids research
2020-01 | Journal article
DOI: 10.1093/nar/gkz990
PMID: 31691821
PMC: PMC7145656
Contributors: Armstrong DR; Berrisford JM; Conroy MJ; Gutmanas A; Anyango S; Choudhary P; Clark AR; Dana JM; Deshpande M; Dunlop R et al.
Source: Self-asserted source
Sreenath Nair via Europe PubMed Central

PDBe-KB: a community-driven resource for structural and functional annotations.

Nucleic acids research
2019-10-04 | Journal article
DOI: 10.1093/nar/gkz853
PMID: 31584092
Source: Self-asserted source
Sreenath Nair

Protein Data Bank: the single global archive for 3D macromolecular structure data.

Nucleic acids research
2019-01 | Journal article
DOI: 10.1093/nar/gky949
PMID: 30357364
Contributors: wwPDB consortium
Source: Self-asserted source
Sreenath Nair via Europe PubMed Central

Quantitative characterization of protein tertiary motifs.

Journal of molecular modeling
2014-01 | Journal article
DOI: 10.1007/s00894-014-2077-z
PMID: 24464316
Contributors: Joshi RR; Sreenath S
Source: Self-asserted source
Sreenath Nair via Europe PubMed Central
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