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ResearcherID: K-5034-2015

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Sweden

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Employment (5)

NBIS: Lund, SE

2020-04-01 to present | Bioinformatician
Employment
Source: Self-asserted source
Paul Theodor Pyl

Lund University: Lund, Skåne, SE

2016-12 to 2020-03-31 | Postdoctoral Researcher (Medical Faculty)
Employment
Source: Self-asserted source
Paul Theodor Pyl

Københavns Universitet Sundhedsvidenskabelige Fakultet: Kobenhavn, DK

2014-12-01 to 2016-11 | Post-Doc (The Novo Nordisk Foundation Center for Basic Metabolic Research)
Employment
Source: Self-asserted source
Paul Theodor Pyl

EMBL Heidelberg: Heidelberg, Baden-Württemberg, DE

2010-10-10 to 2014-11-31 | PhD Student (Genome Biology Unit)
Employment
Source: Self-asserted source
Paul Theodor Pyl

EMBL Heidelberg: Heidelberg, Baden-Württemberg, DE

2010-04-01 to 2010-10-10 | Visiting Scientists (Genome Biology Unit)
Employment
Source: Self-asserted source
Paul Theodor Pyl

Education and qualifications (3)

Ruprecht Karls Universitat Heidelberg: Heidelberg, Baden-Württemberg, DE

2010-10-10 to 2014-11-26 | PhD in Biology (Biological Sciences)
Education
Source: Self-asserted source
Paul Theodor Pyl

Freie Universitat Berlin: Berlin, Berlin, DE

2007-10 to 2009-12 | Master of Science - Bioinformatics (Mathematics and Computer Science)
Education
Source: Self-asserted source
Paul Theodor Pyl

Freie Universitat Berlin: Berlin, Berlin, DE

2004-10 to 2007-07 | Bachelor of Science - Bioinformatics (Mathematics and Computer Science)
Education
Source: Self-asserted source
Paul Theodor Pyl

Works (12)

The Progression of Mycosis Fungoides During Treatment with Mogamulizumab: A BIO-MUSE Case Study of the Tumor and Immune Response in Peripheral Blood and Tissue

Biomedicines
2025-01-14 | Journal article
DOI: 10.3390/biomedicines13010186
Contributors: Angelica Johansson; Eirini Kalliara; Emma Belfrage; Teodor Alling; Paul Theodor Pyl; Anna Sandström Gerdtsson; Urban Gullberg; Anna Porwit; Kristina Drott; Sara Ek
Source: check_circle
Crossref

Quantification and Profiling of Early and Late Differentiation Stage T Cells in Mantle Cell Lymphoma Reveals Immunotherapeutic Targets in Subsets of Patients

Cancers
2024-06-21 | Journal article
DOI: 10.3390/cancers16132289
Contributors: Lavanya Lokhande; Daniel Nilsson; Joana de Matos Rodrigues; May Hassan; Lina M. Olsson; Paul-Theodor Pyl; Louella Vasquez; Anna Porwit; Anna Sandström Gerdtsson; Mats Jerkeman et al.
Source: check_circle
Crossref
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Preferred source (of 2)‎

”Evolution of ipsilateral breast cancer decoded by proteogenomics”

2022-07-14 | Preprint
DOI: 10.1101/2022.07.13.499898
Contributors: Tommaso De Marchi; Paul Theodor Pyl; Martin Sjöström; Susanne Erika Reinsbach; Sebastian DiLorenzo; Björn Nystedt; Lena Tran; Gyula Pekar; Fredrik Wärnberg; Irma Fredriksson et al.
Source: check_circle
Crossref

Analysing high-throughput sequencing data in Python with HTSeq 2.0

Bioinformatics
2022-05-13 | Journal article
DOI: 10.1093/bioinformatics/btac166
Contributors: Givanna H Putri; Simon Anders; Paul Theodor Pyl; John E Pimanda; Fabio Zanini; Valentina Boeva
Source: check_circle
Crossref

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

Nature Medicine
2019-04-01 | Journal article
DOI: 10.1038/s41591-019-0406-6
Part of ISSN: 1078-8956
Contributors: Jakob Wirbel; Paul Theodor Pyl; Ece Kartal; Konrad Zych; Alireza Kashani; Alessio Milanese; Jonas S. Fleck; Anita Y. Voigt; Albert Palleja; Ruby Ponnudurai et al.
Source: Self-asserted source
Paul Theodor Pyl via Crossref Metadata Search
grade
Preferred source (of 2)‎

Recovery of gut microbiota of healthy adults following antibiotic exposure

Nature Microbiology
2018-10 | Journal article
DOI: 10.1038/s41564-018-0257-9
Part of ISSN: 2058-5276
Contributors: Albert Palleja; Kristian H. Mikkelsen; Sofia K. Forslund; Alireza Kashani; Kristine H. Allin; Trine Nielsen; Tue H. Hansen; Suisha Liang; Qiang Feng; Chenchen Zhang et al.
Source: Self-asserted source
Paul Theodor Pyl via Crossref Metadata Search

Homozygous carriers of the TCF7L2 rs7903146 T-allele show altered postprandial response in triglycerides and triglyceride-rich lipoproteins

Scientific Reports
2017-03 | Journal article
DOI: 10.1038/srep43128
Part of ISSN: 2045-2322
Source: Self-asserted source
Paul Theodor Pyl

Asymptomatic multiple myeloma-background of progression, evolution, and prognosis

2016 | Other
Source: Self-asserted source
Paul Theodor Pyl

HTSeq--a Python framework to work with high-throughput sequencing data.

2015-01 | Journal article
DOI: 10.1093/bioinformatics/btu638
PMID: 25260700
PMC: PMC4287950
Contributors: Anders S; Pyl PT; Huber W
Source: Self-asserted source
Paul Theodor Pyl via Europe PubMed Central

h5vc: scalable nucleotide tallies with HDF5

2014 | Journal article
DOI: 10.1093/bioinformatics/btu026
Part of ISSN: 1367-4803
Source: Self-asserted source
Paul Theodor Pyl via Crossref Metadata Search

HTSeq – A Python framework to work with high-throughput sequencing data

2014-02-20 | Preprint
DOI: 10.1101/002824
Contributors: Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Source: check_circle
Crossref

The Genomic and Transcriptomic Landscape of a HeLa Cell Line

2013 | Journal article
DOI: 10.1534/g3.113.005777
Part of ISSN: 2160-1836
Source: Self-asserted source
Paul Theodor Pyl via Crossref Metadata Search
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