Personal information

Emails & domains

Verified email domains

Activities

Collapse all

Employment (1)

HudsonAlpha Institute for Biotechnology: Huntsville, AL, US

(Genome Sequencing Center)
Employment
Source: Self-asserted source
John Lovell

Works (25)

ZW sex chromosome structure in Amborella trichopoda

Nature Plants
2024-11-25 | Journal article
DOI: 10.1038/s41477-024-01858-x
Contributors: Sarah B. Carey; Laramie Aközbek; John T. Lovell; Jerry Jenkins; Adam L. Healey; Shengqiang Shu; Paul Grabowski; Alan Yocca; Ada Stewart; Teresa Jones et al.
Source: check_circle
Crossref

Genome resources for three modern cotton lines guide future breeding efforts

Nature Plants
2024-05-30 | Journal article
DOI: 10.1038/s41477-024-01713-z
Contributors: Avinash Sreedasyam; John T. Lovell; Sujan Mamidi; Sameer Khanal; Jerry W. Jenkins; Christopher Plott; Kempton B. Bryan; Zhigang Li; Shengqiang Shu; Joseph Carlson et al.
Source: check_circle
Crossref

Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean

2024-04-29 | Preprint
DOI: 10.1101/2024.04.26.591401
Contributors: Mary Jane C. Espina; John T. Lovell; Jerry Jenkins; Shengqiang Shu; Avinash Sreedasyam; Brandon D. Jordan; Jenell Webber; LoriBeth Boston; Tomáš Brůna; Jayson Talag et al.
Source: check_circle
Crossref

The complex polyploid genome architecture of sugarcane

Nature
2024-04-25 | Journal article
DOI: 10.1038/s41586-024-07231-4
Contributors: A. L. Healey; O. Garsmeur; J. T. Lovell; S. Shengquiang; A. Sreedasyam; J. Jenkins; C. B. Plott; N. Piperidis; N. Pompidor; V. Llaca et al.
Source: check_circle
Crossref

The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum

G3: Genes, Genomes, Genetics
2023-12-29 | Journal article
DOI: 10.1093/g3journal/jkad245
Contributors: Li Lei; Sean P Gordon; Lifeng Liu; Nir Sade; John T Lovell; Maria Del Mar Rubio Wilhelmi; Vasanth Singan; Avinash Sreedasyam; Rachel Hestrin; Jeremy Phillips et al.
Source: check_circle
Crossref

Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium

Genetics
2023-02-09 | Journal article
DOI: 10.1093/genetics/iyac146
Contributors: Virginia T Scarlett; John T Lovell; Mingqin Shao; Jeremy Phillips; Shengqiang Shu; Joanna Lusinska; David M Goodstein; Jerry Jenkins; Jane Grimwood; Kerrie Barry et al.
Source: check_circle
Crossref

Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics

Nature Plants
2023-02-06 | Journal article
DOI: 10.1038/s41477-022-01333-5
Contributors: Adam L. Healey; Bryan Piatkowski; John T. Lovell; Avinash Sreedasyam; Sarah B. Carey; Sujan Mamidi; Shengqiang Shu; Chris Plott; Jerry Jenkins; Travis Lawrence et al.
Source: check_circle
Crossref

A Pleiotropic Flowering Time QTL Exhibits Gene-by-Environment Interaction for Fitness in a Perennial Grass

Molecular Biology and Evolution
2022-10-07 | Journal article
DOI: 10.1093/molbev/msac203
Contributors: Xiaoyu Weng; Taslima Haque; Li Zhang; Samsad Razzaque; John T Lovell; Juan Diego Palacio-Mejía; Perla Duberney; John Lloyd-Reilley; Jason Bonnette; Thomas E Juenger et al.
Source: check_circle
Crossref

JGI Plant Gene Atlas: An updateable transcriptome resource to improve structural annotations and functional gene descriptions across the plant kingdom

2022-10-03 | Preprint
DOI: 10.1101/2022.09.30.510380
Contributors: Avinash Sreedasyam; Christopher Plott; Md Shakhawat Hossain; John T. Lovell; Jane Grimwood; Jerry W. Jenkins; Christopher Daum; Kerrie Barry; Joseph Carlson; Shengqiang Shu et al.
Source: check_circle
Crossref

GENESPACE tracks regions of interest and gene copy number variation across multiple genomes

eLife
2022-09-09 | Journal article
DOI: 10.7554/eLife.78526
Contributors: John T Lovell; Avinash Sreedasyam; M Eric Schranz; Melissa Wilson; Joseph W Carlson; Alex Harkess; David Emms; David M Goodstein; Jeremy Schmutz
Source: check_circle
Crossref

Dynamic genome evolution in a model fern

Nature Plants
2022-09-01 | Journal article
DOI: 10.1038/s41477-022-01226-7
Contributors: D. Blaine Marchant; Guang Chen; Shengguan Cai; Fei Chen; Peter Schafran; Jerry Jenkins; Shengqiang Shu; Chris Plott; Jenell Webber; John T. Lovell et al.
Source: check_circle
Crossref

GENESPACE: syntenic pan-genome annotations for eukaryotes

2022-03-11 | Preprint
DOI: 10.1101/2022.03.09.483468
Contributors: John T. Lovell; Avinash Sreedasyam; M. Eric Schranz; Melissa A. Wilson; Joseph W. Carlson; Alex Harkess; David Emms; David Goodstein; Jeremy Schmutz
Source: check_circle
Crossref

Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping

The Plant Genome
2021-07 | Journal article
DOI: 10.1002/tpg2.20110
Contributors: Huang Li; Xiao Hu; John T. Lovell; Paul P. Grabowski; Sujan Mamidi; Cindy Chen; Mojgan Amirebrahimi; Indika Kahanda; Brendan Mumey; Kerrie Barry et al.
Source: check_circle
Crossref

Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding

Nature Communications
2021-07-05 | Journal article
DOI: 10.1038/s41467-021-24328-w
Contributors: John T. Lovell; Nolan B. Bentley; Gaurab Bhattarai; Jerry W. Jenkins; Avinash Sreedasyam; Yanina Alarcon; Clive Bock; Lori Beth Boston; Joseph Carlson; Kimberly Cervantes et al.
Source: check_circle
Crossref

Gene-rich UV sex chromosomes harbor conserved regulators of sexual development

Science Advances
2021-07-02 | Journal article
DOI: 10.1126/sciadv.abh2488
Contributors: Sarah B. Carey; Jerry Jenkins; John T. Lovell; Florian Maumus; Avinash Sreedasyam; Adam C. Payton; Shengqiang Shu; George P. Tiley; Noe Fernandez-Pozo; Adam Healey et al.
Source: check_circle
Crossref

Natural variation in plant telomere length is associated with flowering time

The Plant Cell
2021-05-31 | Journal article
DOI: 10.1093/plcell/koab022
Contributors: Jae Young Choi; Liliia R Abdulkina; Jun Yin; Inna B Chastukhina; John T Lovell; Inna A Agabekian; Pierce G Young; Samsad Razzaque; Dorothy E Shippen; Thomas E Juenger et al.
Source: check_circle
Crossref

Furanoditerpenoid biosynthesis in the bioenergy crop switchgrass is catalyzed by an alternate metabolic pathway

2021-03-31 | Preprint
DOI: 10.1101/2021.03.30.437764
Contributors: Andrew Muchlinski; Meirong Jia; Kira Tiedge; Jason S. Fell; Kyle A. Pelot; Lisl Chew; Danielle Davisson; Yuxuan Chen; Justin Siegel; John T. Lovell et al.
Source: check_circle
Crossref

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

Nature
2021-02-18 | Journal article
DOI: 10.1038/s41586-020-03127-1
Contributors: John T. Lovell; Alice H. MacQueen; Sujan Mamidi; Jason Bonnette; Jerry Jenkins; Joseph D. Napier; Avinash Sreedasyam; Adam Healey; Adam Session; Shengqiang Shu et al.
Source: check_circle
Crossref

Environmentally responsive QTL controlling surface wax load in switchgrass

Theoretical and Applied Genetics
2020-11-14 | Journal article
DOI: 10.1007/s00122-020-03659-0
Contributors: Jennifer Bragg; Pernell Tomasi; Li Zhang; Tina Williams; Delilah Wood; John T. Lovell; Adam Healey; Jeremy Schmutz; Jason E. Bonnette; Prisca Cheng et al.
Source: check_circle
Crossref

Flexible multivariate linear mixed models for structured multiple traits

2020-03-29 | Preprint
DOI: 10.1101/2020.03.27.012690
Contributors: Hyeonju Kim; Gregory Farage; John T. Lovell; John K. Mckay; Thomas E. Juenger; Śaunak Sen
Source: check_circle
Crossref

Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function

eLife
2018-12-06 | Journal article
DOI: 10.7554/eLife.41038
Contributors: J Grey Monroe; Tyler Powell; Nicholas Price; Jack L Mullen; Anne Howard; Kyle Evans; John T Lovell; John K McKay
Source: check_circle
Crossref

Genetic Mapping Reveals an Anthocyanin Biosynthesis Pathway Gene Potentially Influencing Evolutionary Divergence between Two Subspecies of Scarlet Gilia (Ipomopsis aggregata)

Molecular Biology and Evolution
2018-04-01 | Journal article
DOI: 10.1093/molbev/msx318
Contributors: Brandon E Campitelli; Amanda M Kenney; Robin Hopkins; Jacob Soule; John T Lovell; Thomas E Juenger
Source: check_circle
Crossref

Mutation Accumulation in an Asexual Relative of Arabidopsis

PLOS Genetics
2017-01-09 | Journal article
DOI: 10.1371/journal.pgen.1006550
Contributors: John T. Lovell; Kirsten Bomblies; Robert J. Williamson; Stephen I. Wright; John K. McKay; Timothy F. Sharbel
Source: check_circle
Crossref

Ecological genetics of range size variation in Boechera spp. (Brassicaceae)

Ecology and Evolution
2015-11 | Journal article
DOI: 10.1002/ece3.1746
Contributors: John T. Lovell; John K. McKay
Source: check_circle
Crossref

Exploiting Differential Gene Expression and Epistasis to Discover Candidate Genes for Drought-Associated QTLs in Arabidopsis thaliana

The Plant Cell
2015-04 | Journal article
DOI: 10.1105/tpc.15.00122
Contributors: John T. Lovell; Jack L. Mullen; David B. Lowry; Kedija Awole; James H. Richards; Saunak Sen; Paul E. Verslues; Thomas E. Juenger; John K. McKay
Source: check_circle
Crossref

Peer review (14 reviews for 7 publications/grants)

Review activity for Cell. (1)
Review activity for Nature (5)
Review activity for Nature communications (1)
Review activity for Nature genetics. (1)
Review activity for Nature plants. (4)
Review activity for Scientific data. (1)
Review activity for The plant cell. (1)
How many people are using ORCID?