Personal information

Websites & social links

Farley lab website

Other IDs

Scopus Author ID: 38861394200

Keywords

Enhancers, Regulatory principles, Non-coding genome, Ciona intestinalis, Gene regulation

Activities

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Employment (3)

University of California San Diego: La Jolla, CA, US

2016-09-01 to present | Assistant Professor (Medicine/Molecular Biology)
Employment
Source: Self-asserted source
Emma Farley

Princeton University: Princeton, NJ, US

2015-07-01 to 2016-05-31 | Postdoc (Lewis Sigler Institute of Integrative Genomics)
Employment
Source: Self-asserted source
Emma Farley

University of California Berkeley: Berkeley, California, US

2012-01-09 to 2015-06-31 | Postdoc (Molecular and Cell Biology)
Employment
Source: Self-asserted source
Emma Farley

Education and qualifications (2)

University of Oxford: Oxford, Oxfordshire, GB

MBioChem (Molecular and Cellular Biochemistry)
Education
Source: Self-asserted source
Emma Farley

Imperial College London: London, London, GB

2007-09-01 to 2011-11-01 | PhD (MRC Clinical Sciences Center)
Education
Source: Self-asserted source
Emma Farley

Funding (2)

Statistical and high-throughput models of enhancer function and evolution

2021-02-22 to 2025-01-31 | Grant
National Human Genome Research Institute (Bethesda, US)
URL: https://app.dimensions.ai/details/grant/grant.9615284
GRANT_NUMBER: R01HG011485
Source: Self-asserted source
Emma Farley via DimensionsWizard

Deciphering the regulatory principles governing enhancer specificity

2017-09-30 to 2022-06-30 | Grant
National Human Genome Research Institute (n/a, US)
URL: https://grants.uberresearch.com/100000051/DP2HG010013/Deciphering-the-regulatory-principles-governing-enhancer-specificity
GRANT_NUMBER: grant.DP2HG010013
Source: Self-asserted source
Emma Farley via DimensionsWizard

Works (14)

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

Science
2021 | Journal article
DOI: 10.1126/science.abe2218
EID:

2-s2.0-85106707626

Part of ISSN: 10959203 00368075
Contributors: Hoencamp, C.; Dudchenko, O.; Elbatsh, A.M.O.; Brahmachari, S.; Raaijmakers, J.A.; van Schaik, T.; Cacciatore, Á.S.; Contessoto, V.G.; van Heesbeen, R.G.H.P.; van den Broek, B. et al.
Source: Self-asserted source
Emma Farley via Scopus - Elsevier

Enhancer grammar in development, evolution, and disease: dependencies and interplay

Developmental Cell
2021 | Journal article
DOI: 10.1016/j.devcel.2021.02.016
EID:

2-s2.0-85101885173

Part of ISSN: 18781551 15345807
Contributors: Jindal, G.A.; Farley, E.K.
Source: Self-asserted source
Emma Farley via Scopus - Elsevier

Functional genomic approaches to elucidate the role of enhancers during development.

Wiley interdisciplinary reviews. Systems biology and medicine
2019-12-05 | Journal article
DOI: 10.1002/wsbm.1467
PMID: 31808313
PMC: PMC7027484
Source: Self-asserted source
Emma Farley
grade
Preferred source (of 2)‎

A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.

Nature genetics
2018-04 | Journal article
DOI: 10.1038/s41588-018-0091-2
PMID: 29610481
PMC: PMC5893414
Contributors: Zhang W; Bojorquez-Gomez A; Velez DO; Xu G; Sanchez KS; Shen JP; Chen K; Licon K; Melton C; Olson KM et al.
Source: Self-asserted source
Emma Farley via Europe PubMed Central
grade
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Identifying DNase I hypersensitive sites as driver distal regulatory elements in breast cancer

Nature Communications
2017-09-05 | Journal article
DOI: 10.1038/s41467-017-00100-x
Part of ISSN: 2041-1723
Contributors: Matteo D′Antonio; Donate Weghorn; Agnieszka D′Antonio-Chronowska; Florence Coulet; Katrina M. Olson; Christopher DeBoever; Frauke Drees; Angelo Arias; Hakan Alakus; Andrea L. Richardson et al.
Source: Self-asserted source
Emma Farley via Crossref Metadata Search
grade
Preferred source (of 2)‎

Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells.

Cell stem cell
2017-04 | Journal article
DOI: 10.1016/j.stem.2017.03.009
PMID: 28388430
Contributors: DeBoever C; Li H; Jakubosky D; Benaglio P; Reyna J; Olson KM; Huang H; Biggs W; Sandoval E; D'Antonio M et al.
Source: Self-asserted source
Emma Farley via Europe PubMed Central
grade
Preferred source (of 2)‎

Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers

Proceedings of the National Academy of Sciences
2016-05-06 | Journal article
DOI: 10.1073/pnas.1605085113
Contributors: Emma K. Farley; Katrina M. Olson; Wei Zhang; Daniel S. Rokhsar; Michael S. Levine
Source: Self-asserted source
Emma Farley via Crossref Metadata Search
grade
Preferred source (of 2)‎

Regulatory Principles Governing Tissue Specificity of Developmental Enhancers

Cold Spring Harbor Symposia on Quantitative Biology
2015 | Journal article
DOI: 10.1101/sqb.2015.80.027227
Contributors: Emma K. Farley; Katrina M. Olson; Michael S. Levine
Source: Self-asserted source
Emma Farley via Crossref Metadata Search
grade
Preferred source (of 2)‎

Suboptimization of developmental enhancers

Science
2015-10 | Journal article
DOI: 10.1126/science.aac6948
Contributors: E. K. Farley; K. M. Olson; W. Zhang; A. J. Brandt; D. S. Rokhsar; M. S. Levine
Source: Self-asserted source
Emma Farley via Crossref Metadata Search
grade
Preferred source (of 2)‎

Gene Transfer in Developing Chick Embryos: In Ovo Electroporation

Neural Development
2013 | Other
DOI: 10.1007/978-1-62703-444-9_14
Contributors: Emma K. Farley
Source: Self-asserted source
Emma Farley via Crossref Metadata Search
grade
Preferred source (of 2)‎

HOT DNAs: a novel class of developmental enhancers

Genes & Development
2012-05-01 | Journal article
DOI: 10.1101/gad.192583.112
Contributors: E. Farley; M. Levine
Source: Self-asserted source
Emma Farley via Crossref Metadata Search
grade
Preferred source (of 2)‎

Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis

Neural Development
2011 | Journal article
DOI: 10.1186/1749-8104-6-17
Contributors: Emma K Farley; Emily Gale; David Chambers; Meng Li
Source: Self-asserted source
Emma Farley via Crossref Metadata Search
grade
Preferred source (of 2)‎

Doublesex and mab-3-related transcription factor 5 promotes midbrain dopaminergic identity in pluripotent stem cells by enforcing a ventral-medial progenitor fate.

Proceedings of the National Academy of Sciences of the United States of America
2011-05 | Journal article
DOI: 10.1073/pnas.1016679108
PMID: 21576465
PMC: PMC3107330
Contributors: Gennet N; Gale E; Nan X; Farley E; Takacs K; Oberwallner B; Chambers D; Li M
Source: Self-asserted source
Emma Farley via Europe PubMed Central
grade
Preferred source (of 2)‎

Novel transcription factor involved in neurogenesis

Developmental Biology
2010-08 | Journal article
DOI: 10.1016/j.ydbio.2010.05.439
Contributors: Emma K. Farley; Emily Gale; Nicole Gennet; Xinsheng Nan; Meng Li
Source: Self-asserted source
Emma Farley via Crossref Metadata Search
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