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ResearcherID: Y-2184-2018

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CNRS en Alpes: Grenoble, Rhône-Alpes, FR

Research Engineer (Laboratoire d'Ecologie Alpine)
Employment
Source: Self-asserted source
Frédéric Boyer

Works (50 of 54)

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Page 1 of 2

Untangling the contribution of adaptiveversusnon-adaptive processes in the evolution of reproductive isolation betweenCoenonymphabutterflies

2024-12-03 | Preprint
DOI: 10.1101/2024.11.29.625973
Contributors: Thibaut Capblancq; Camille Roux; Frédéric Boyer; Fabrice Legeai; Mathieu Joron; Laurence Després
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Crossref

From single species to communities: microsatellite amplicon sequencing to monitor felids using Feliplex

2024-10-23 | Preprint
DOI: 10.1101/2024.10.20.619303
Contributors: Divyashree Rana; Frédéric Boyer; Marta De Barba; Pierre Taberlet; Uma Ramakrishnan
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Crossref

wholeskim: Utilizing genome skims for taxonomically annotating ancient DNA metagenomes

2024-09-02 | Preprint
DOI: 10.22541/au.172529953.39892767/v1
Contributors: Lucas Elliott; Frédéric Boyer; Téo Lemane; Inger Alsos; Eric Coissac
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Unravelling large-scale patterns and drivers of biodiversity in dry rivers

Nature Communications
2024-08-22 | Journal article
DOI: 10.1038/s41467-024-50873-1
Contributors: Arnaud Foulquier; Thibault Datry; Roland Corti; Daniel von Schiller; Klement Tockner; Rachel Stubbington; Mark O. Gessner; Frédéric Boyer; Marc Ohlmann; Wilfried Thuiller et al.
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Unravelling large-scale patterns and drivers of biodiversity in dry rivers

2023-09-19 | Preprint
DOI: 10.21203/rs.3.rs-3221351/v1
Contributors: Arnaud Foulquier; Thibault Datry; Roland Corti; Daniel von Schiller; Klement Tockner; Rachel Stubbington; Mark Gessner; Frédéric Boyer; Marc Ohlmann; Wilfried Thuiller et al.
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Individual genotypes from environmental DNA: fingerprinting snow tracks of three large carnivore species

2023-05-29 | Preprint
DOI: 10.22541/au.168534659.92288292/v1
Contributors: Marta De Barba; Molly Baur; Frédéric Boyer; Luca Fumagalli; Marjeta Konec; Christian Miquel; Elena Pazhenkova; Nadege Remollino; Tomaž Skrbinšek; Céline Stoffel et al.
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Trophic impact of Neogobius melanostomus in a restored site on the Old Rhine River (France)

Aquatic Sciences
2023-04 | Journal article
DOI: 10.1007/s00027-023-00942-2
Contributors: C. Staentzel; O. Schlumberger; A. Barillier; A. Valentini; F. Boyer; J.-N. Beisel
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Priority conservation areas for Cedrus atlantica in the Atlas Mountains, Morocco

Conservation Science and Practice
2022-06 | Journal article
DOI: 10.1111/csp2.12680
Contributors: Rachid Cheddadi; Pierre Taberlet; Frédéric Boyer; Eric Coissac; Ali Rhoujjati; Davnah Urbach; Cécile Remy; Carla Khater; Salwa el Antry; Jalila Aoujdad et al.
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Crossref

Tempo and drivers of plant diversification in the European mountain system

Nature Communications
2022-05-18 | Journal article
DOI: 10.1038/s41467-022-30394-5
Contributors: Jan Smyčka; Cristina Roquet; Martí Boleda; Adriana Alberti; Frédéric Boyer; Rolland Douzet; Christophe Perrier; Maxime Rome; Jean-Gabriel Valay; France Denoeud et al.
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Crossref

Multiple adaptive solutions to face climatic constraints: novel insights in the debate over the role of convergence in local adaptation

2021-11-19 | Other
DOI: 10.1101/2021.11.18.469099
Contributors: Badr Benjelloun; Kevin Leempoel; Frédéric Boyer; Sylvie Stucki; Ian Streeter; Pablo Orozco-terWengel; Florian J. Alberto; Bertrand Servin; Filippo Biscarini; Adriana Alberti et al.
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Crossref

Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding

Molecular Ecology
2021-07 | Journal article
DOI: 10.1111/mec.15632
Part of ISSN: 0962-1083
Part of ISSN: 1365-294X
Source: Self-asserted source
Frédéric Boyer

Environmental DNA for biomonitoring

Molecular Ecology
2021-07 | Journal article
DOI: 10.1111/mec.16023
Part of ISSN: 0962-1083
Part of ISSN: 1365-294X
Source: Self-asserted source
Frédéric Boyer

Morphological vs. DNA metabarcoding approaches for the evaluation of stream ecological status with benthic invertebrates: Testing different combinations of markers and strategies of data filtering

Molecular Ecology
2021-07 | Journal article
DOI: 10.1111/mec.15723
Part of ISSN: 0962-1083
Part of ISSN: 1365-294X
Source: Self-asserted source
Frédéric Boyer

Environmental DNA for biomonitoring

2021-06-10 | Other
DOI: 10.22541/au.162333861.15420336/v1
Contributors: Jan Pawlowski; Aurelie Bonin; Frédéric Boyer; Tristan Cordier; Pierre Taberlet
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Crossref

Double-digest RAD-sequencing: do pre- and post-sequencing protocol parameters impact biological results?

Molecular Genetics and Genomics
2021-03-20 | Journal article
DOI: 10.1007/s00438-020-01756-9
Contributors: Tristan Cumer; Charles Pouchon; Frédéric Boyer; Glenn Yannic; Delphine Rioux; Aurélie Bonin; Thibaut Capblancq
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Crossref

metabaR : an R package for the evaluation and improvement of DNA metabarcoding data quality

2020-08-31 | Preprint
DOI: 10.1101/2020.08.28.271817
Contributors: Lucie Zinger; Clément Lionnet; Anne-Sophie Benoiston; Julian Donald; Céline Mercier; Frédéric Boyer
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BAdabouM: a genomic structural variations discovery tool for polymorphism analyses

2020-04-02 | Preprint
DOI: 10.1101/2020.04.01.018127
Contributors: Tristan Cumer; François Pompanon; Frédéric Boyer
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Crossref

From environmental DNA sequences to ecological conclusions: How strong is the influence of methodological choices?

Journal of Biogeography
2020-01 | Journal article
DOI: 10.1111/jbi.13681
Part of ISSN: 0305-0270
Part of ISSN: 1365-2699
Source: Self-asserted source
Frédéric Boyer

An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity.

Molecular ecology resources
2019-09-09 | Journal article
DOI: 10.1111/1755-0998.13070
PMID: 31359622
Source: Self-asserted source
Frédéric Boyer

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

Molecular Ecology
2019-04 | Journal article
DOI: 10.1111/mec.15060
Contributors: Lucie Zinger; Aurélie Bonin; Inger G. Alsos; Miklós Bálint; Holly Bik; Frédéric Boyer; Anthony A. Chariton; Simon Creer; Eric Coissac; Bruce E. Deagle et al.
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Crossref

Body size determines soil community assembly in a tropical forest

Molecular Ecology
2019-02 | Journal article
DOI: 10.1111/mec.14919
Contributors: Lucie Zinger; Pierre Taberlet; Heidy Schimann; Aurélie Bonin; Frédéric Boyer; Marta De Barba; Philippe Gaucher; Ludovic Gielly; Charline Giguet‐Covex; Amaia Iribar et al.
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Crossref

Old origin of a protective endogenous retrovirus (enJSRV) in the Ovis genus

Heredity
2018-07-05 | Journal article
DOI: 10.1038/s41437-018-0112-z
Part of ISSN: 0018-067X
Contributors: Tristan Cumer; François Pompanon; Frédéric Boyer
Source: Self-asserted source
Frédéric Boyer via Crossref Metadata Search

Convergent genomic signatures of domestication in sheep and goats

Nature Communications
2018-03-06 | Journal article
DOI: 10.1038/s41467-018-03206-y
Part of ISSN: 2041-1723
Contributors: Florian J. Alberto; Frédéric Boyer; Pablo Orozco-terWengel; Ian Streeter; Bertrand Servin; Pierre de Villemereuil; Badr Benjelloun; Pablo Librado; Filippo Biscarini; Licia Colli et al.
Source: Self-asserted source
Frédéric Boyer via Crossref Metadata Search

Microrefugia, Climate Change, and Conservation of Cedrus atlantica in the Rif Mountains, Morocco

Frontiers in Ecology and Evolution
2017-10-04 | Journal article
DOI: 10.3389/fevo.2017.00114
Part of ISSN: 2296-701X
Contributors: Rachid Cheddadi; Alexandra-Jane Henrot; Louis François; Frédéric Boyer; Mark Bush; Matthieu Carré; Eric Coissac; Paulo E. De Oliveira; Francesco Ficetola; Alain Hambuckers et al.
Source: Self-asserted source
Frédéric Boyer via Crossref Metadata Search

Soil community assembly varies across body sizes in a tropical forest

2017-06-23 | Preprint
DOI: 10.1101/154278
Contributors: Lucie Zinger; Pierre Taberlet; Heidy Schimann; Aurélie Bonin; Frédéric Boyer; Marta De Barba; Philippe Gaucher; Ludovic Gielly; Charline Giguet-Covex; Amaia Iribar et al.
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Crossref

In the hunt for genomic markers of metabolic resistance to pyrethroids in the mosquito Aedes aegypti: An integrated next-generation sequencing approach

PLOS Neglected Tropical Diseases
2017-04 | Journal article
DOI: 10.1371/journal.pntd.0005526
Source: Self-asserted source
Frédéric Boyer

Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects

PeerJ
2016 | Journal article
DOI: 10.7717/peerj.1966
PMID: 27114891
Source: Self-asserted source
Frédéric Boyer

Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae)

Annals of Botany
2016-07 | Journal article
DOI: 10.1093/aob/mcw135
PMID: 27443299
Source: Self-asserted source
Frédéric Boyer

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

Molecular Ecology
2016-02 | Journal article
DOI: 10.1111/mec.13428
PMID: 26479867
Source: Self-asserted source
Frédéric Boyer

obitools: a unix-inspired software package for DNA metabarcoding

Molecular Ecology Resources
2016-01 | Journal article
DOI: 10.1111/1755-0998.12428
PMID: 25959493
Source: Self-asserted source
Frédéric Boyer

Characterizing neutral genomic diversity and selection signatures in indigenous populations of Moroccan goats (Capra hircus) using WGS data

Frontiers in Genetics
2015 | Journal article
DOI: 10.3389/fgene.2015.00107
PMID: 25904931
Source: Self-asserted source
Frédéric Boyer

Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

BMC genomics
2015-12 | Journal article
DOI: 10.1186/s12864-015-2342-2
PMID: 26714643
Source: Self-asserted source
Frédéric Boyer

Upscaling the niche variation hypothesis from the intra- to the inter-specific level

Oecologia
2015-11 | Journal article
DOI: 10.1007/s00442-015-3390-7
PMID: 26198049
Source: Self-asserted source
Frédéric Boyer

The Type VI Secretion TssEFGK-VgrG Phage-Like Baseplate Is Recruited to the TssJLM Membrane Complex via Multiple Contacts and Serves As Assembly Platform for Tail Tube/Sheath Polymerization

PLoS genetics
2015-10 | Journal article
DOI: 10.1371/journal.pgen.1005545
PMID: 26460929
Source: Self-asserted source
Frédéric Boyer

Identifying genomic changes associated with insecticide resistance in the dengue mosquito Aedes aegypti by deep targeted sequencing

Genome Research
2015-09 | Journal article
DOI: 10.1101/gr.189225.115
PMID: 26206155
Source: Self-asserted source
Frédéric Boyer

DNA metabarcoding diet analysis for species with parapatric vs sympatric distribution: a case study on subterranean rodents

Heredity
2015-05 | Journal article
DOI: 10.1038/hdy.2014.109
PMID: 25649502
Source: Self-asserted source
Frédéric Boyer

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

Molecular Ecology Resources
2015-05 | Journal article
DOI: 10.1111/1755-0998.12338
PMID: 25327646
Source: Self-asserted source
Frédéric Boyer

Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA

Molecular Ecology
2015-04 | Journal article
DOI: 10.1111/mec.13136
PMID: 25735209
Source: Self-asserted source
Frédéric Boyer

Effect of DNA extraction and sample preservation method on rumen bacterial population

Anaerobe
2014-10 | Journal article
DOI: 10.1016/j.anaerobe.2013.09.015
PMID: 24125910
Source: Self-asserted source
Frédéric Boyer

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

Molecular Ecology Resources
2014-03 | Journal article
DOI: 10.1111/1755-0998.12188
PMID: 24128180
Source: Self-asserted source
Frédéric Boyer

An ABC transporter and an outer membrane lipoprotein participate in posttranslational activation of type VI secretion in Pseudomonas aeruginosa

Environmental Microbiology
2013-02 | Journal article
DOI: 10.1111/j.1462-2920.2012.02816.x
PMID: 22765374
Source: Self-asserted source
Frédéric Boyer

Microprocessor, Setx, Xrn2, and Rrp6 co-operate to induce premature termination of transcription by RNAPII

Cell
2012-09 | Journal article
DOI: 10.1016/j.cell.2012.08.004
PMID: 22980978
Source: Self-asserted source
Frédéric Boyer

Bacterial syntenies: an exact approach with gene quorum

BMC bioinformatics
2011-05 | Journal article
DOI: 10.1186/1471-2105-12-193
PMID: 21605461
Source: Self-asserted source
Frédéric Boyer

Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions

PLoS pathogens
2010-08 | Journal article
DOI: 10.1371/journal.ppat.1001068
PMID: 20865170
Source: Self-asserted source
Frédéric Boyer

Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?

BMC genomics
2009-03 | Journal article
DOI: 10.1186/1471-2164-10-104
PMID: 19284603
Source: Self-asserted source
Frédéric Boyer

Lossless filter for multiple repetitions with Hamming distance

Journal of Discrete Algorithms
2008 | Journal article
DOI: 10.1016/j.jda.2007.03.003
Source: Self-asserted source
Frédéric Boyer

Emergence and potential of high-throughput and integrative approaches in pathology

Annals of the New York Academy of Sciences
2008-12 | Journal article
DOI: 10.1196/annals.1428.060
PMID: 19120175
Source: Self-asserted source
Frédéric Boyer

Differential strain-specific diagnosis of the heartwater agent: Ehrlichia ruminantium

Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases
2008-07 | Journal article
DOI: 10.1016/j.meegid.2007.06.001
PMID: 17644446
Source: Self-asserted source
Frédéric Boyer

Ehrlichia ruminantium: genomic and evolutionary features

Trends in Parasitology
2007-09 | Journal article
DOI: 10.1016/j.pt.2007.07.007
PMID: 17652027
Source: Self-asserted source
Frédéric Boyer

Repseek, a tool to retrieve approximate repeats from large DNA sequences

Bioinformatics (Oxford, England)
2007-01 | Journal article
DOI: 10.1093/bioinformatics/btl519
PMID: 17038345
Source: Self-asserted source
Frédéric Boyer
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