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Scopus Author ID: 15065598400

Keywords

Systems Biology, Nutrient Sensing, Nitrate sensing, plant biology, plant nutrition, root growth, root development

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France

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CNRS Délégation Languedoc-Roussillon: Montpellier, FR

Employment
Source: Self-asserted source
Gabriel Krouk

Works (50 of 63)

Items per page:
Page 1 of 2

Boosting Protein-Protein Interaction Detection with AlphaFold Multimer and Transformers

2025-03-11 | Preprint
DOI: 10.1101/2025.03.05.641631
Contributors: Lena Connesson; Gabriel Krouk; Baldwin Dumortier
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Nitrogen sensing and regulatory networks: it's about time and space

The Plant Cell
2024-05-01 | Journal article
DOI: 10.1093/plcell/koae038
Contributors: Carly M Shanks; Karin Rothkegel; Matthew D Brooks; Chia-Yi Cheng; José M Alvarez; Sandrine Ruffel; Gabriel Krouk; Rodrigo A Gutiérrez; Gloria M Coruzzi
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Classification and Regression Trees to predict Transcription Factor Combinatorial Interaction in scRNA-seq data

2024-04-20 | Preprint
DOI: 10.1101/2024.04.17.589552
Contributors: Jean Baptiste Carluer; Laura Steinmann; Clément Carré; André Mas; Gabriel Krouk
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Next-Gen GWAS: full 2D epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Genome Biology
2024-03-25 | Journal article
DOI: 10.1186/s13059-024-03202-0
Contributors: Clément Carré; Jean Baptiste Carluer; Christian Chaux; Chad Estoup-Streiff; Nicolas Roche; Eric Hosy; André Mas; Gabriel Krouk
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Distinct early transcriptional regulations by turgor and osmotic potential in the roots of Arabidopsis

Journal of Experimental Botany
2023-09-29 | Journal article
DOI: 10.1093/jxb/erad307
Contributors: Amandine Crabos; Yunji Huang; Thomas Boursat; Christophe Maurel; Sandrine Ruffel; Gabriel Krouk; Yann Boursiac; Bjorn Usadel
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Reduction in PLANT DEFENSIN 1 expression in Arabidopsis thaliana results in increased resistance to pathogens and zinc toxicity

Journal of Experimental Botany
2023-09-13 | Journal article
DOI: 10.1093/jxb/erad228
Contributors: Ngoc Nga Nguyen; Olivier Lamotte; Mohanad Alsulaiman; Sandrine Ruffel; Gabriel Krouk; Nathalie Berger; Vincent Demolombe; Claude Nespoulous; Thi Minh Nguyet Dang; Sébastien Aimé et al.
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Unleashing the potential of peptides in agriculture and beyond

Trends in Plant Science
2023-07 | Journal article
DOI: 10.1016/j.tplants.2023.03.025
Contributors: Gabriel Krouk; Wojciech Szponarski; Sandrine Ruffel
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PeTriBERT : Augmenting BERT with tridimensional encoding for inverse protein folding and design

2022-08-13 | Preprint
DOI: 10.1101/2022.08.10.503344
Contributors: Baldwin Dumortier; Antoine Liutkus; Clément Carré; Gabriel Krouk
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Full epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

2022-07-21 | Preprint
DOI: 10.1101/2022.07.20.500572
Contributors: Clément Carré; Jean Baptiste Carluer; Christian Chaux; Nicolas Roche; André Mas; Gabriel Krouk
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Crossref

PDX1.1-dependent biosynthesis of vitamin B6 protects roots from ammonium-induced oxidative stress

Molecular Plant
2022-05 | Journal article
DOI: 10.1016/j.molp.2022.01.012
Contributors: Ying Liu; Rodolfo A. Maniero; Ricardo F.H. Giehl; Michael Melzer; Priscille Steensma; Gabriel Krouk; Teresa B. Fitzpatrick; Nicolaus von Wirén
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Root membrane ubiquitinome under short-term osmotic stress

2021-12-09 | Preprint
DOI: 10.1101/2021.12.06.471398
Contributors: Nathalie Berger; Vincent Demolombe; Sonia Hem; Valérie Rofidal; Laura Steinmann; Gabriel Krouk; Amandine Crabos; Philippe Nacry; Lionel Verdoucq; Véronique Santoni
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Nitrate-regulated growth processes involve activation of gibberellin pathway

2021-07-27 | Other
DOI: 10.1101/2021.07.27.453969
Contributors: Lucie Camut; Barbora Gallova; Lucas Jilli; Mathilde Sirlin-Josserand; Esther Carrera; Lali Sakvarelidze-Achard; Julie Zumsteg; Dimitri Heintz; Sandrine Ruffel; Gabriel Krouk et al.
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Crossref

Nitrate in 2020: Thirty Years from Transport to Signaling Networks

The Plant Cell
2020-07 | Journal article
DOI: 10.1105/tpc.19.00748
Contributors: Elena A. Vidal; José M. Alvarez; Viviana Araus; Eleodoro Riveras; Matthew D. Brooks; Gabriel Krouk; Sandrine Ruffel; Laurence Lejay; Nigel M. Crawford; Gloria M. Coruzzi et al.
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Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade

Nature Communications
2020-03-02 | Journal article
DOI: 10.1038/s41467-020-14979-6
Contributors: José M. Alvarez; Anna-Lena Schinke; Matthew D. Brooks; Angelo Pasquino; Lauriebeth Leonelli; Kranthi Varala; Alaeddine Safi; Gabriel Krouk; Anne Krapp; Gloria M. Coruzzi
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Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions

Nature Communications
2019-04-05 | Journal article
DOI: 10.1038/s41467-019-09522-1
Contributors: Matthew D. Brooks; Jacopo Cirrone; Angelo V. Pasquino; Jose M. Alvarez; Joseph Swift; Shipra Mittal; Che-Lun Juang; Kranthi Varala; Rodrigo A. Gutiérrez; Gabriel Krouk et al.
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LPCAT1 controls phosphate homeostasis in a zinc-dependent manner

eLife
2018 | Journal article
DOI: 10.7554/eLife.32077
EID:

2-s2.0-85043529534
Contributors: Kisko, M.; Bouain, N.; Safi, A.; Medici, A.; Akkers, R.C.; Secco, D.; Fouret, G.; Krouk, G.; Aarts, M.G.M.; Busch, W. et al.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

HNI9 and HY5 maintain ROS homeostasis under high nitrogen provision in Arabidopsis

2018-11 | Other
DOI: 10.1101/479030
Contributors: Fanny Bellegarde; Amel Maghiaoui; Jossia Boucherez; Gabriel Krouk; Laurence Lejay; Lien Bach; Alain Gojon; Antoine Martin
Source: Self-asserted source
Gabriel Krouk via Crossref Metadata Search

Responses to Systemic Nitrogen Signaling in Arabidopsis Roots Involve trans-Zeatin in Shoots

The Plant Cell
2018-06 | Journal article
DOI: 10.1105/tpc.18.00011
Contributors: Arthur Poitout; Amandine Crabos; Ivan Petřík; Ondrej Novák; Gabriel Krouk; Benoît Lacombe; Sandrine Ruffel
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Revisiting the functional properties of NPF6.3/NRT1.1/CHL1 in xenopus oocytes

2018-02 | Other
DOI: 10.1101/244467
Contributors: Melanie Noguero; Sophie Leran; Eleonore Bouguyon; Chantal Brachet; Pascal Tillard; Philippe Nacry; Alain Gojon; Gabriel Krouk; Benoit Lacombe
Source: Self-asserted source
Gabriel Krouk via Crossref Metadata Search

HRS1/HHOs GARP transcription factors and reactive oxygen species are regulators of Arabidopsis nitrogen starvation response

2018-02-05 | Preprint
DOI: 10.1101/164277
Contributors: Alaeddine Safi; Anna Medici; Wojciech Szponarski; Amy Marshall-Colon; Sandrine Ruffel; Frédéic Gaymard; Gloria Coruzzi; Benoît Lacombe; Gabriel Krouk
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Root Responses to Heterogeneous Nitrate Availability are Mediated by trans-Zeatin in Arabidopsis Shoots

2018-01-04 | Other
DOI: 10.1101/242420
Contributors: Arthur Poitout; Amandine Crabos; Ivan Petřík; Ondrej Novák; Gabriel Krouk; Benoît Lacombe; Sandrine Ruffel
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The next generation of training for arabidopsis researchers: Bioinformatics and quantitative biology

Plant Physiology
2017 | Journal article
DOI: 10.1104/pp.17.01490
EID:

2-s2.0-85037736520
Contributors: Friesner, J.; Assmann, S.M.; Bastow, R.; Bailey-Serres, J.; Beynon, J.; Brendel, V.; Buell, C.R.; Bucksch, A.; Busch, W.; Demura, T. et al.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

TransDetect identifies a new regulatory module controlling phosphate accumulation

Plant Physiology
2017 | Journal article
DOI: 10.1104/pp.17.00568
EID:

2-s2.0-85030844114
Contributors: Pal, S.; Kisko, M.; Dubos, C.; Lacombe, B.; Berthomieu, P.; Krouk, G.; Rouached, H.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

The world according to GARP transcription factors

Current Opinion in Plant Biology
2017-10 | Journal article
DOI: 10.1016/j.pbi.2017.07.006
Part of ISSN: 1369-5266
Contributors: Alaeddine Safi; Anna Medici; Wojciech Szponarski; Sandrine Ruffel; Benoît Lacombe; Gabriel Krouk
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Gabriel Krouk via Crossref Metadata Search
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Nitrate signalling: Calcium bridges the nitrate gap

Nature Plants
2017-06 | Journal article
DOI: 10.1038/nplants.2017.95
Part of ISSN: 2055-0278
Contributors: Gabriel Krouk
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Gabriel Krouk via Crossref Metadata Search
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Reverse engineering highlights potential principles of large gene regulatory network design and learning

npj Systems Biology and Applications
2017-06-22 | Journal article
DOI: 10.1038/s41540-017-0019-y
Contributors: Clément Carré; André Mas; Gabriel Krouk
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Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root

Science Signaling
2016 | Journal article
DOI: 10.1126/scisignal.aaf2768
EID:

2-s2.0-84994013303
Contributors: Ristova, D.; Carré, C.; Pervent, M.; Medici, A.; Kim, G.J.; Scalia, D.; Ruffel, S.; Birnbaum, K.D.; Lacombe, B.; Busch, W. et al.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

<strong>Comparative study of molecular binding sites of nitrate and auxin in <em>Arabidopsis thaliana</em> NRT1.1 &amp; NRT1.2 transporter.</strong>

Proceedings of MOL2NET 2016, International Conference on Multidisciplinary Sciences, 2nd edition
2016-11-03 | Conference paper
DOI: 10.3390/mol2net-02-17011
Contributors: Wendy Gonzalez; Daniel Bustos; Gabriel Krouk; Rodrigo Gutiérrez
Source: Self-asserted source
Gabriel Krouk via Crossref Metadata Search

Novel aquaporin regulatory mechanisms revealed by interactomics

Molecular & Cellular Proteomics
2016-09-08 | Journal article
DOI: 10.1074/mcp.m116.060087
Contributors: Jorge Bellati; Chloé Champeyroux; Sonia Hem; Valérie Rofidal; Gabriel Krouk; Christophe Maurel; Véronique Santoni
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Gabriel Krouk via Crossref Metadata Search
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Nitrate Controls Root Development through Post-Transcriptional Regulation of the NRT1.1/NPF6.3 transporter/sensor

Plant Physiol.
2016-08 | Journal article
DOI: 10.1104/pp.16.01047
Contributors: Eleonore Bouguyon; Francine Perrine-Walker; Marjorie Pervent; Juliette Rochette; Candela Cuesta; Eva Benkova; Alexandre Martinière; Lien Bach; Gabriel Krouk; Alain Gojon et al.
Source: Self-asserted source
Gabriel Krouk via Crossref Metadata Search
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Nitrate Transport, Sensing, and Responses in Plants

Molecular Plant
2016-06 | Journal article
DOI: 10.1016/j.molp.2016.05.004
Contributors: José A. O'Brien; Andrea Vega; Eléonore Bouguyon; Gabriel Krouk; Alain Gojon; Gloria Coruzzi; Rodrigo A. Gutiérrez
Source: Self-asserted source
Gabriel Krouk via Crossref Metadata Search
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Hormones and nitrate: a two-way connection

Plant Mol Biol
2016-03 | Journal article
DOI: 10.1007/s11103-016-0463-x
Contributors: Gabriel Krouk
Source: Self-asserted source
Gabriel Krouk via Crossref Metadata Search
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Long-distance nitrate signaling displays cytokinin dependent and independent branches

J. Integr. Plant Biol.
2016-02 | Journal article
DOI: 10.1111/jipb.12453
Contributors: Sandrine Ruffel; Arthur Poitout; Gabriel Krouk; Gloria M. Coruzzi; Benoit Lacombe
Source: Self-asserted source
Gabriel Krouk via Crossref Metadata Search
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AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip

Nature Communications
2015 | Journal article
DOI: 10.1038/ncomms7274
EID:

2-s2.0-84923885102
Contributors: Medici, A.; Marshall-Colon, A.; Ronzier, E.; Szponarski, W.; Wang, R.; Gojon, A.; Crawford, N.M.; Ruffel, S.; Coruzzi, G.M.; Krouk, G.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier
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Correction: Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture (Proceedings of the National Academy of Sciences of the United States of America (2015) 110 (15133-15138) DOI: 0.1073/pnas.1305883110)

Proceedings of the National Academy of Sciences of the United States of America
2015 | Journal article
DOI: 10.1073/pnas.1507065112
EID:

2-s2.0-84929377792
Contributors: Rosas, U.; Cibrian-Jaramillo, A.; Ristova, D.; Banta, J.A.; Gifford, M.L.; Fan, A.H.; Zhou, R.W.; Kim, G.J.; Krouk, G.; Birnbaum, K.D. et al.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

GeneCloud reveals semantic enrichment in lists of gene descriptions

Molecular Plant
2015 | Journal article
DOI: 10.1016/j.molp.2015.02.005
EID:

2-s2.0-84930932098
Contributors: Krouk, G.; Carré, C.; Fizames, C.; Gojon, A.; Ruffel, S.; Lacombe, B.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

Multiple mechanisms of nitrate sensing by Arabidopsis nitrate transceptor NRT1.1

Nature Plants
2015 | Journal article
DOI: 10.1038/nplants.2015.15
EID:

2-s2.0-84991407714
Contributors: Bouguyon, E.; Brun, F.; Meynard, D.; Kubeš, M.; Pervent, M.; Leran, S.; Lacombe, B.; Krouk, G.; Guiderdoni, E.; Zazímalová, E. et al.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

Finding a nitrogen niche: A systems integration of local and systemic nitrogen signalling in plants

Journal of Experimental Botany
2014 | Journal article
DOI: 10.1093/jxb/eru263
EID:

2-s2.0-84930520965
Contributors: Li, Y.; Krouk, G.; Coruzzi, G.M.; Ruffel, S.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis

Proceedings of the National Academy of Sciences of the United States of America
2014 | Journal article
DOI: 10.1073/pnas.1404657111
EID:

2-s2.0-84904303291
Contributors: Para, A.; Li, Y.; Marshall-Coloń, A.; Varala, K.; Francoeur, N.J.; Moran, T.M.; Edwards, M.B.; Hackley, C.; Bargmann, B.O.R.; Birnbaum, K.D. et al.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

The Primary Nitrate Response: A multifaceted signalling pathway

Journal of Experimental Botany
2014 | Journal article
DOI: 10.1093/jxb/eru245
EID:

2-s2.0-84929075968
Contributors: Medici, A.; Krouk, G.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

A map of cell type-specific auxin responses

Molecular Systems Biology
2013 | Journal article
DOI: 10.1038/msb.2013.40
EID:

2-s2.0-84894849355
Contributors: Bargmann, B.O.R.; Vanneste, S.; Krouk, G.; Nawy, T.; Efroni, I.; Shani, E.; Choe, G.; Friml, J.; Bergmann, D.C.; Estelle, M. et al.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

ABA transport and transporters

Trends in Plant Science
2013 | Journal article
DOI: 10.1016/j.tplants.2013.01.007
EID:

2-s2.0-84878568452
Contributors: Boursiac, Y.; Léran, S.; Corratgé-Faillie, C.; Gojon, A.; Krouk, G.; Lacombe, B.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

Gene regulatory networks in plants: Learning causality from time and perturbation

Genome Biology
2013 | Journal article
DOI: 10.1186/gb-2013-14-6-123
EID:

2-s2.0-84883795281
Contributors: Krouk, G.; Lingeman, J.; Marshall Colon, A.; Coruzzi, G.; Shasha, D.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots

BMC Genomics
2013 | Journal article
DOI: 10.1186/1471-2164-14-701
EID:

2-s2.0-84885348613
Contributors: Vidal, E.A.; Moyano, T.C.; Krouk, G.; Katari, M.S.; Tanurdzic, M.; McCombie, W.R.; Coruzzi, G.M.; Gutiérrez, R.A.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture

Proceedings of the National Academy of Sciences of the United States of America
2013 | Journal article
DOI: 10.1073/pnas.1305883110
EID:

2-s2.0-84883797058
Contributors: Rosas, U.; Cibrian-Jaramillo, A.; Ristova, D.; Banta, J.A.; Gifford, M.L.; Fan, A.H.; Zhou, R.W.; Kim, G.J.; Krouk, G.; Birnbaum, K.D. et al.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

RootScape: A landmark-based system for rapid screening of root architecture in Arabidopsis

Plant Physiology
2013 | Journal article
DOI: 10.1104/pp.112.210872
EID:

2-s2.0-84874606623
Contributors: Ristova, D.; Rosas, U.; Krouk, G.; Ruffel, S.; Birnbaum, K.D.; Coruzzi, G.M.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

TARGET: A transient transformation system for genome-wide transcription factor target discovery

Molecular Plant
2013 | Journal article
DOI: 10.1093/mp/sst010
EID:

2-s2.0-84878313826
Contributors: Bargmann, B.O.R.; Marshall-Colon, A.; Efroni, I.; Ruffel, S.; Birnbaum, K.D.; Coruzzi, G.M.; Krouk, G.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

Improving the nitrate utilization through plants,Améliorer l'utilisation du nitrate par les plantes

Biofutur
2012 | Journal article
EID:

2-s2.0-84858648121
Contributors: Krouk, G.; Gojon, A.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

Iron and ROS control of the DownSTream mRNA decay pathway is essential for plant fitness

EMBO Journal
2012 | Journal article
DOI: 10.1038/emboj.2011.341
EID:

2-s2.0-84855353453
Contributors: Ravet, K.; Reyt, G.; Arnaud, N.; Krouk, G.; Djouani, E.-B.; Boucherez, J.; Briat, J.-F.; Gaymard, F.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier

A framework integrating plant growth with hormones and nutrients

Trends in Plant Science
2011 | Journal article
DOI: 10.1016/j.tplants.2011.02.004
EID:

2-s2.0-79954425947
Contributors: Krouk, G.; Ruffel, S.; Gutiérrez, R.A.; Gojon, A.; Crawford, N.M.; Coruzzi, G.M.; Lacombe, B.
Source: Self-asserted source
Gabriel Krouk via Scopus - Elsevier
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