Personal information

No personal information available

Activities

Collapse all

Works (17)

PDBe-KB: collaboratively defining the biological context of structural data.

Nucleic acids research
2022-01 | Journal article
DOI: 10.1093/nar/gkab988
PMID: 34755867
PMC: PMC8728252
Contributors: PDBe-KB consortium
Source: Self-asserted source
David Jakubec via Europe PubMed Central

TLR8/TLR7 dysregulation due to a novel TLR8 mutation causes severe autoimmune hemolytic anemia and autoinflammation in identical twins.

American journal of hematology
2022-01 | Journal article
DOI: 10.1002/ajh.26452
PMID: 34981838
Contributors: Fejtkova M; Sukova M; Hlozkova K; Skvarova Kramarzova K; Rackova M; Jakubec D; Bakardjieva M; Bloomfield M; Klocperk A; Parackova Z et al.
Source: Self-asserted source
David Jakubec via Europe PubMed Central

EMC is required for biogenesis of Xport-A, an essential chaperone of Rhodopsin-1 and the TRP channel.

EMBO reports
2021-12 | Journal article
DOI: 10.15252/embr.202153210
PMID: 34918864
Contributors: Gaspar CJ; Vieira LC; Santos CC; Christianson JC; Jakubec D; Strisovsky K; Adrain C; Domingos PM
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures.

Nucleic acids research
2021-07 | Journal article
DOI: 10.1093/nar/gkab377
PMID: 34019656
PMC: PMC8262704
Contributors: Vymětal J; Jakubec D; Galgonek J; Vondrášek J
Source: Self-asserted source
David Jakubec via Europe PubMed Central

EMC is required for biogenesis and membrane insertion of Xport-A, an essential chaperone of rhodopsin-1 and the TRP channel

2021-02 | Preprint
DOI: 10.1101/2021.02.01.429115
OTHER-ID:

PPR276822
Contributors: Gaspar CJ; Vieira LC; Christianson JC; Jakubec D; Strisovsky K; Adrain C; Domingos PM
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Hydrophobic Amino Acids as Universal Elements of Protein-Induced DNA Structure Deformation.

International journal of molecular sciences
2020-06 | Journal article
DOI: 10.3390/ijms21113986
PMID: 32498246
PMC: PMC7312683
Contributors: Faltejsková K; Jakubec D; Vondrášek J
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Efficient Estimation of Absolute Binding Free Energy for a Homeodomain-DNA Complex from Nonequilibrium Pulling Simulations.

Journal of chemical theory and computation
2020-03 | Journal article
DOI: 10.1021/acs.jctc.0c00006
PMID: 32208691
Contributors: Jakubec D; Vondrášek J
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Membrane Protein Dimerization in Cell-Derived Lipid Membranes Measured by FRET with MC Simulations.

Biophysical journal
2020-03 | Journal article
DOI: 10.1016/j.bpj.2020.03.011
PMID: 32246901
Contributors: Škerle J; Humpolíčková J; Johnson N; Rampírová P; Poláchová E; Fliegl M; Dohnálek J; Suchánková A; Jakubec D; Strisovsky K
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Can All-Atom Molecular Dynamics Simulations Quantitatively Describe Homeodomain-DNA Binding Equilibria?

Journal of chemical theory and computation
2019-03 | Journal article
DOI: 10.1021/acs.jctc.8b01144
PMID: 30807142
Contributors: Jakubec D; Vondrášek J
Source: Self-asserted source
David Jakubec via Europe PubMed Central

3DPatch: fast 3D structure visualization with residue conservation.

Bioinformatics (Oxford, England)
2019-01 | Journal article
DOI: 10.1093/bioinformatics/bty464
PMID: 29931189
PMC: PMC6330005
Contributors: Jakubec D; Vondrášek J; Finn RD
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Widespread evolutionary crosstalk among protein domains in the context of multi-domain proteins.

PloS one
2018-08 | Journal article
DOI: 10.1371/journal.pone.0203085
PMID: 30169546
PMC: PMC6118372
Contributors: Jakubec D; Kratochvíl M; Vymĕtal J; Vondrášek J
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Dimerization of rhomboid protease RHBDL2 in lipid membranes addressed by FRET with MC simulations

2018-03 | Preprint
DOI: 10.1101/292318
OTHER-ID:

PPR15273
Contributors: Škerle J; Humpolíčková J; Rampírová P; Poláchová E; Adámková L; Suchánková A; Jakubec D; Strisovsky K
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Amino Acid Interaction (INTAA) web server.

Nucleic acids research
2017-07 | Journal article
DOI: 10.1093/nar/gkx352
PMID: 28472475
PMC: PMC5570164
Contributors: Galgonek J; Vymetal J; Jakubec D; Vondrášek J
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Noncovalent Interactions in Specific Recognition Motifs of Protein-DNA Complexes.

Journal of chemical theory and computation
2017-02 | Journal article
DOI: 10.1021/acs.jctc.6b00775
PMID: 27992205
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Sequence-Specific Recognition of DNA by Proteins: Binding Motifs Discovered Using a Novel Statistical/Computational Analysis.

2016 | Journal article
DOI: 10.1371/journal.pone.0158704
PMID: 27384774
PMC: PMC4934765
Contributors: Jakubec D; Laskowski RA; Vondrasek J
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Representative Amino Acid Side-Chain Interactions in Protein-DNA Complexes: A Comparison of Highly Accurate Correlated Ab Initio Quantum Mechanical Calculations and Efficient Approaches for Applications to Large Systems.

2015-09 | Journal article
DOI: 10.1021/acs.jctc.5b00398
PMID: 26575904
Contributors: Hostaš J; Jakubec D; Laskowski RA; Gnanasekaran R; Řezáč J; Vondrášek J; Hobza P
Source: Self-asserted source
David Jakubec via Europe PubMed Central

Large-Scale Quantitative Assessment of Binding Preferences in Protein-Nucleic Acid Complexes.

2015-04 | Journal article
PMID: 26894243
Contributors: Jakubec D; Hostas J; Laskowski RA; Hobza P; Vondrásek J
Source: Self-asserted source
David Jakubec via Europe PubMed Central
How many people are using ORCID?