Personal information

Other IDs

Scopus Author ID: 57197814794

Keywords

chimeric RNAs, genomic data analysis, structural bioinformatics, therapeutic peptides

Countries

United States, India

Activities

Collapse all

Employment (2)

University of Virginia: Charlottesville, VA, US

2017-05-01 to present | Research Associate (Department of Pathology)
Employment
Source: Self-asserted source
Sandeep Singh

Lovely Professional University (LPU): Phagwara, Punjab, IN

2009-08-03 to 2011-05-03 | Assistant Professor (Department of Biotechnology)
Employment
Source: Self-asserted source
Sandeep Singh

Education and qualifications (3)

CSIR-Institute of Microbial Technology: Chandigarh, Chandigarh, IN

2011-10-13 to 2017-02-22 | PhD (Bioinformatics Centre)
Education
Source: Self-asserted source
Sandeep Singh

Indian Institute of Information Technology Allahabad: Allahabad, Uttar Pradesh, IN

2007-07-01 to 2009-06-30 | M.Tech in Bioinformatics (Department of Bioinformatics)
Education
Source: Self-asserted source
Sandeep Singh

SHAITS (Previously AAI-DU): Allahabad, Uttar Pradesh, IN

2003-07-01 to 2007-06-30 | B.Tech in Biotechnology (Department of Biotechnology)
Education
Source: Self-asserted source
Sandeep Singh

Works (42)

Landscape of chimeric RNAs in COVID-19 patient blood

Genes & Diseases
2025-05 | Journal article
DOI: 10.1016/j.gendis.2024.101348
Contributors: Samuel Haddox; Ping Wu; Sandeep Singh; Fujun Qin; Jack Engel; Andrea Kian; Syed Ahmad; Hui Li; Peng Wu
Source: check_circle
Crossref

Chimeric RNA landscape in the placenta: A transcriptomic analysis revealing novel diagnostic biomarkers forpreeclampsia

Genes & Diseases
2025-01 | Journal article
DOI: 10.1016/j.gendis.2024.101242
Contributors: Jingjing Xu; Xinrui Shi; Shitong Lin; Sandeep Singh; Samuel Haddox; Christopher Phung; Tommy Manley; Ningxi Huang; Peng Wu; Hui Li
Source: check_circle
Crossref

RTCpredictor: identification of read-through chimeric RNAs from RNA sequencing data

Briefings in Bioinformatics
2024-05-23 | Journal article
DOI: 10.1093/bib/bbae251
Contributors: Sandeep Singh; Xinrui Shi; Samuel Haddox; Justin Elfman; Syed Basil Ahmad; Sarah Lynch; Tommy Manley; Claire Piczak; Christopher Phung; Yunan Sun et al.
Source: check_circle
Crossref

A protein-encoding CCDC7 circular RNA inhibits the progression of prostate cancer by up-regulating FLRT3

npj Precision Oncology
2024-01-16 | Journal article
DOI: 10.1038/s41698-024-00503-2
Contributors: Qiong Wang; Bisheng Cheng; Sandeep Singh; Yiran Tao; Zhongqiu Xie; Fujun Qin; Xinrui Shi; Jingjing Xu; Chenxi Hu; Wanlong Tan et al.
Source: check_circle
Crossref

CTNNBIP1-CLSTN1 functions as a housekeeping chimeric RNA and regulates cell proliferation through SERPINE2

Cell Death Discovery
2023-10-07 | Journal article
DOI: 10.1038/s41420-023-01668-8
Contributors: Chen Chen; Fujun Qin; Sandeep Singh; Yue Tang; Hui Li
Source: check_circle
Crossref

CTNNBIP1-CLSTN1 Functions as a Housekeeping Chimeric RNA, and Regulates Cell Proliferation through SERPINE2

2023-07-17 | Preprint
DOI: 10.21203/rs.3.rs-3112431/v1
Contributors: Hui Li; Chen Chen; Yue Tang; Fujun Qin; Sandeep Singh
Source: check_circle
Crossref

Rhabdomyosarcomas are oncogene addicted to the activation of AVIL

Proceedings of the National Academy of Sciences
2022-06-14 | Journal article
DOI: 10.1073/pnas.2118048119
Contributors: Zhongqiu Xie; Pawel L. Janczyk; Xinrui Shi; Qiong Wang; Sandeep Singh; Robert Cornelison; Jingjing Xu; James W. Mandell; Frederic G. Barr; Hui Li
Source: check_circle
Crossref

Comparative study of bioinformatic tools for the identification of chimeric RNAs from RNA Sequencing.

RNA biology
2021-06-18 | Journal article
DOI: 10.1080/15476286.2021.1940047
PMID: 34142643
Source: Self-asserted source
Sandeep Singh

Prediction, Characterization, and In Silico Validation of Chimeric RNAs

Methods in Molecular Biology
2020 | Book chapter
DOI: 10.1007/978-1-4939-9904-0_1
Part of ISBN: 9781493999033
Part of ISBN: 9781493999040
Part of ISSN: 1064-3745
Part of ISSN: 1940-6029
Source: Self-asserted source
Sandeep Singh

Validation of Chimeric Fusion Peptides Using Proteomics Data

Methods in Molecular Biology
2020 | Book chapter
DOI: 10.1007/978-1-4939-9904-0_9
Part of ISBN: 9781493999033
Part of ISBN: 9781493999040
Part of ISSN: 1064-3745
Part of ISSN: 1940-6029
Source: Self-asserted source
Sandeep Singh

Landscape characterization of chimeric RNAs in colorectal cancer

Cancer Letters
2020-10 | Journal article
DOI: 10.1016/j.canlet.2020.05.037
Contributors: Hao Wu; Sandeep Singh; Zhongqiu Xie; Xiaorong Li; Hui Li
Source: check_circle
Crossref

A cytoskeleton regulator AVIL drives tumorigenesis in glioblastoma

Nature Communications
2020-07-10 | Journal article
DOI: 10.1038/s41467-020-17279-1
Contributors: Zhongqiu Xie; Pawel Ł. Janczyk; Ying Zhang; Aiqun Liu; Xinrui Shi; Sandeep Singh; Loryn Facemire; Kristopher Kubow; Zi Li; Yuemeng Jia et al.
Source: check_circle
Crossref

Topoisomerase II contributes to DNA secondary structure-mediated double-stranded breaks

Nucleic Acids Research
2020-07-09 | Journal article
DOI: 10.1093/nar/gkaa483
Contributors: Karol Szlachta; Arkadi Manukyan; Heather M Raimer; Sandeep Singh; Anita Salamon; Wenying Guo; Kirill S Lobachev; Yuh-Hwa Wang
Source: check_circle
Crossref

RUNX3 levels in human hematopoietic progenitors are regulated by aging and dictate erythroid-myeloid balance

Haematologica
2020-04 | Journal article
DOI: 10.3324/haematol.2018.208918
Part of ISSN: 0390-6078
Part of ISSN: 1592-8721
Source: Self-asserted source
Sandeep Singh

Pausing sites of RNA polymerase II on actively transcribed genes are enriched in DNA double-stranded breaks

Journal of Biological Chemistry
2020-03 | Journal article
DOI: 10.1074/jbc.RA119.011665
Contributors: Sandeep Singh; Karol Szlachta; Arkadi Manukyan; Heather M. Raimer; Manikarna Dinda; Stefan Bekiranov; Yuh-Hwa Wang
Source: check_circle
Crossref

The landscape of chimeric RNAs in non-diseased tissues and cells.

Nucleic acids research
2020-01-22 | Journal article
DOI: 10.1093/nar/gkz1223
PMID: 31965184
Source: Self-asserted source
Sandeep Singh

Functional heritage: the evolution of chimeric RNA into a gene.

RNA biology
2019-09-29 | Journal article
DOI: 10.1080/15476286.2019.1670038
PMID: 31566065
Source: Self-asserted source
Sandeep Singh

The landscape of chimeric RNAs in bladder urothelial carcinoma

The International Journal of Biochemistry & Cell Biology
2019-05 | Journal article
DOI: 10.1016/j.biocel.2019.02.007
Contributors: Dingjun Zhu; Sandeep Singh; Xu Chen; Zaosong Zheng; Jian Huang; Tianxin Lin; Hui Li
Source: check_circle
Crossref

Benchmarking of different molecular docking methods for protein-peptide docking.

BMC bioinformatics
2019-02-04 | Journal article
DOI: 10.1186/s12859-018-2449-y
PMID: 30717654
Source: Self-asserted source
Sandeep Singh

A cell-based splicing reporter system to identify regulators of cis-splicing between adjacent genes.

Nucleic acids research
2019-02-01 | Journal article
DOI: 10.1093/nar/gky1288
PMID: 30590765
PMC: PMC6393300
Source: Self-asserted source
Sandeep Singh

The Landscape and Implications of Chimeric RNAs in Cervical Cancer

EBioMedicine
2018-11 | Journal article
DOI: 10.1016/j.ebiom.2018.10.059
Contributors: Peng Wu; Shuo Yang; Sandeep Singh; Fujun Qin; Shailesh Kumar; Ling Wang; Ding Ma; Hui Li
Source: check_circle
Crossref

In silico approaches for predicting the half-life of natural and modified peptides in blood.

PloS one
2018-06-01 | Journal article
DOI: 10.1371/journal.pone.0196829
PMID: 29856745
PMC: PMC5983457
Source: Self-asserted source
Sandeep Singh

AntiTbPdb: a knowledgebase of anti-tubercular peptides.

Database : the journal of biological databases and curation
2018-01-01 | Journal article
DOI: 10.1093/database/bay025
PMID: 29688365
PMC: PMC5829563
Source: Self-asserted source
Sandeep Singh

Connections between Transcription Downstream of Genes and cis-SAGe Chimeric RNA.

Genes
2017-11-22 | Journal article
DOI: 10.3390/genes8110338
PMID: 29165374
PMC: PMC5704251
Source: Self-asserted source
Sandeep Singh

Molecular property diagnostic suite (MPDS): Development of disease-specific open source web portals for drug discovery.

SAR and QSAR in environmental research
2017-11-01 | Journal article
DOI: 10.1080/1062936x.2017.1402819
PMID: 29206500
Source: Self-asserted source
Sandeep Singh

THPdb: Database of FDA-approved peptide and protein therapeutics.

PloS one
2017-07-31 | Journal article
DOI: 10.1371/journal.pone.0181748
PMID: 28759605
PMC: PMC5536290
Source: Self-asserted source
Sandeep Singh

Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential.

Scientific reports
2017-02-17 | Journal article
DOI: 10.1038/srep42851
PMID: 28211521
PMC: PMC5314457
Source: Self-asserted source
Sandeep Singh

PEPlife: A Repository of the Half-life of Peptides.

Scientific reports
2016-11-07 | Journal article
DOI: 10.1038/srep36617
PMID: 27819351
PMC: PMC5098197
Source: Self-asserted source
Sandeep Singh

ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis.

Scientific reports
2016-09-16 | Journal article
DOI: 10.1038/srep32713
PMID: 27633273
PMC: PMC5025660
Source: Self-asserted source
Sandeep Singh

A Web Server and Mobile App for Computing Hemolytic Potency of Peptides.

Scientific reports
2016-03-08 | Journal article
DOI: 10.1038/srep22843
PMID: 26953092
PMC: PMC4782144
Source: Self-asserted source
Sandeep Singh

PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues

Biol Direct
2015 | Journal article
DOI: 10.1186/s13062-015-0103-4
Contributors: Sandeep Singh; Harinder Singh; Abhishek Tuknait; Kumardeep Chaudhary; Balvinder Singh; S. Kumaran; Gajendra P. S. Raghava
Source: Self-asserted source
Sandeep Singh via Crossref Metadata Search

CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides.

Nucleic acids research
2015-11-19 | Journal article
DOI: 10.1093/nar/gkv1266
PMID: 26586798
PMC: PMC4702894
Source: Self-asserted source
Sandeep Singh

SATPdb: a database of structurally annotated therapeutic peptides

Nucleic Acids Res
2015-11-02 | Journal article
DOI: 10.1093/nar/gkv1114
Contributors: Sandeep Singh; Kumardeep Chaudhary; Sandeep Kumar Dhanda; Sherry Bhalla; Salman Sadullah Usmani; Ankur Gautam; Abhishek Tuknait; Piyush Agrawal; Deepika Mathur; Gajendra P.S. Raghava
Source: Self-asserted source
Sandeep Singh via Crossref Metadata Search

Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines.

BMC cancer
2015-01-01 | Journal article
DOI: 10.1186/s12885-016-2082-y
PMID: 26860193
PMC: PMC4748564
Source: Self-asserted source
Sandeep Singh

AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides.

Journal article
PMID: 25392419
Source: Self-asserted source
Sandeep Singh

AntiAngioPred: A Server for Prediction of Anti-Angiogenic Peptides.

Journal article
PMID: 26335203
Source: Self-asserted source
Sandeep Singh

CancerPPD: a database of anticancer peptides and proteins.

Journal article
PMID: 25270878
Source: Self-asserted source
Sandeep Singh

Evaluation of protein dihedral angle prediction methods.

Journal article
PMID: 25166857
Source: Self-asserted source
Sandeep Singh

Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides.

Journal article
PMID: 24174543
Source: Self-asserted source
Sandeep Singh

In silico platform for predicting and initiating β-turns in a protein at desired locations.

Journal article
PMID: 25728793
Source: Self-asserted source
Sandeep Singh

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures.

Journal article
PMID: 24923818
Source: Self-asserted source
Sandeep Singh

QSAR based model for discriminating EGFR inhibitors and non-inhibitors using Random forest.

Journal article
PMID: 25880749
Source: Self-asserted source
Sandeep Singh

Peer review (1 review for 1 publication/grant)

Review activity for BMC bioinformatics (1)
How many people are using ORCID?