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Biography

After completing a Bachelors degree in Mathematics at the University of Warwick in 2003, attaining a class 2.1 degree with Honours, I decided to continue my training at the University and joined the MOAC Doctoral Training Centre in its first year. I completed my MSc (which focused on inter-disciplinary science) in 2004, attaining a first class degree with distinction. I was awarded a PhD in Mathematical Biology and Biophysical Chemistry in January 2009.

My first position upon completing my PhD was as a post-doctoral fellowship at the Wellcome Trust Sanger Institute where I work as a mathematical and statistical biologist working under Matt Hurles. My work focused on the analysis of CGH CNV genotyping data, in particular its application to case-control genome-wide association studies.

Following this, I moved into the group of Tony Kouzarides at the Wellcome Trust/CRUK Gurdon Institute where I worked as the lab bioinformatician. My main focus was on the analysis of the role of histone modifications, and in particular their role in diseases such as cancer. Much of my work involved the analysis of high-throughput sequencing data, in particular ChIP-seq of novel histone modifications.

I joined the University of Portsmouth as a Senior Research Fellow at the University of Portsmouth in May 2017, and was promoted to Reader in Genomics and Bioinformatics in September 2021. I am also the Bioinformatics lead at the Centre for Enzyme Innovation (CEI). Our goal is to identify and develop enzymatic solutions to help solve global environmental issues such as the current plastics crisis.

Outside of work, I am a keen runner and regularly take part in ultra-marathons, often running over 100 miles at a time. I am also an avid martial artist and hold a black belt (1st Degree) in the Korean art of Tae Kwon Do.

Languages: R, Perl, C++, MySQL, Python, PHP, AWK, Bash

Computational: Maintenance and processing of large data sets (particularly NGS data), high-throughout data analysis (e.g. PCA, statistical modeling, clustering), normalisation of complex data sets

Laboratory: High throughput sequencing (Illumina and Nanopore), laser capture microdissection, small-sample RNA preparations, microarrays, immunohistochemical staining, PCR and quantitative RT PCR

Activities

Employment (4)

University of Portsmouth: Portsmouth, Hampshire, GB

2021-09-01 to present | Reader in Genomics and Bioinformatics (Faculty of Science and Health)
Employment
Source: Self-asserted source
Samuel Charles Robson

University of Portsmouth: Portsmouth, Hampshire, GB

2017-05 to 2021-08-31 | Senior Research Fellow (Bioinformatics) (School of Pharmacy and Biomedical Science)
Employment
Source: Self-asserted source
Samuel Charles Robson

Gurdon Institute: Cambridge, Cambridgeshire, GB

2010-03 to 2017-04 | Bioinformatician (Kouzarides Group)
Employment
Source: Self-asserted source
Samuel Charles Robson

Wellcome Trust Sanger Institute: Cambridge, Cambridgeshire, GB

2008-03 to 2010-03 | Statistical/Mathematical Biologist
Employment
Source: Self-asserted source
Samuel Charles Robson

Education and qualifications (3)

University of Warwick: Coventry, Coventry, GB

2004-10 to 2008-09 | PhD in Mathematical Biology and Biophysical Chemistry (MOAC)
Education
Source: Self-asserted source
Samuel Charles Robson

University of Warwick: Coventry, Coventry, GB

2003-09 to 2004-09 | MSc in Mathematical Biology and Biophysical Chemistry (MOAC)
Education
Source: Self-asserted source
Samuel Charles Robson

University of Warwick: Coventry, Coventry, GB

2000-09-01 to 2003-06-01 | BSc in Mathematics (Department of Mathematics)
Education
Source: Self-asserted source
Samuel Charles Robson

Professional activities (4)

Royal Society of Biology: London, GB

2020 to present | Member
Membership
Source: Self-asserted source
Samuel Charles Robson

Science Council: London, GB

2017 to present | Chartered Scientist (CSci)
Membership
Source: Self-asserted source
Samuel Charles Robson

Royal Statistical Society: London, GB

2016 to present | Chartered Statistician (CStat)
Membership
Source: Self-asserted source
Samuel Charles Robson

University of Portsmouth: Portsmouth, Hampshire, GB

2021 | Vice-Chancellor's Award for Excellence
Distinction
Source: Self-asserted source
Samuel Charles Robson

Works (39)

Developing Biosensors for SARS-CoV-2 Wastewater-Based Epidemiology: A Systematic Review of Trends, Limitations and Future Perspectives

Sustainability
2022-12 | Journal article | Author
Contributors: Christopher C. Azubuike; Fay Couceiro; Samuel Charles Robson; Maya Piccinni; Joy Watts; John Williams; Anastasia J. Callaghan; Thomas P. Howard
Source: check_circle
Multidisciplinary Digital Publishing Institute

A Review of Cross-Disciplinary Approaches for the Identification of Novel Industrially Relevant Plastic-Degrading Enzymes

Sustainability
2022-11 | Journal article | Author
Contributors: Josephine Herbert; Angela Beckett; Samuel Charles Robson
Source: check_circle
Multidisciplinary Digital Publishing Institute

The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study.

The Journal of infection
2021-10 | Journal article
Contributors: Boshier FAT; Venturini C; Stirrup O; Guerra-Assunção JA; Alcolea-Medina A; Becket AH; Byott M; Charalampous T; Filipe ADS; Frampton D et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Nosocomial or not? A combined epidemiological and genomic investigation to understand hospital-acquired COVID-19 infection on an elderly care ward.

Infection prevention in practice
2021-08 | Journal article
Contributors: Wenlock RD; Tausan M; Mann R; Garr W; Preston R; Arnold A; Hoban J; Webb L; Quick C; Beckett A et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

A new method to study genome mutations using the information entropy

2021-05 | Preprint
Contributors: Vopson MM; Robson SC
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance

2021-05 | Preprint
Contributors: Papadatou M; Robson SC; Dobretsov S; Watts JE; Longyear J; Salta M
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

The skin microbiome of Xenopus laevis and the effects of husbandry conditions.

Animal microbiome
2021-02 | Journal article
Contributors: Piccinni MZ; Watts JEM; Fourny M; Guille M; Robson SC
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Subtle effects of radiation on embryo development of the 3-spined stickleback

2020 | Other
OTHER-ID:

E-MTAB-7872

Source: check_circle
EMBL-EBI

Complete transcriptome assembly and annotation of a critically important amphipod species in freshwater ecotoxicological risk assessment: Gammarus fossarum.

Environment international
2020-02 | Journal article
Contributors: Caputo DR; Robson SC; Werner I; Ford AT
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

RNA-seq comparison of immortalised myoblasts from dystrophic and WT mice

2019 | Other
OTHER-ID:

E-MTAB-7287

Source: check_circle
EMBL-EBI

RNA-seq comparison of whole muscle between WT mice, dystrophic mice, and P2rx7-null dystrophic mice

2019 | Other
OTHER-ID:

E-MTAB-7698

Source: check_circle
EMBL-EBI

Sox2 is present in RNA binding complexes and interacts with snRNA 7SK in mouse embryonic stem cells

2019 | Other
OTHER-ID:

E-MTAB-7570

Source: check_circle
EMBL-EBI

Total Absence of Dystrophin Expression Exacerbates Ectopic Myofiber Calcification and Fibrosis and Alters Macrophage Infiltration Patterns.

The American journal of pathology
2019-11 | Journal article
Contributors: Young CNJ; Gosselin MRF; Rumney R; Oksiejuk A; Chira N; Bozycki L; Matryba P; Łukasiewicz K; Kao AP; Dunlop J et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells.

Experimental cell research
2019-05 | Journal article
Contributors: Samudyata; Amaral PP; Engström PG; Robson SC; Nielsen ML; Kouzarides T; Castelo-Branco G
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

METTL1 Promotes let-7 MicroRNA Processing via m7G Methylation.

Molecular cell
2019-04 | Journal article
Contributors: Pandolfini L; Barbieri I; Bannister AJ; Hendrick A; Andrews B; Webster N; Murat P; Mach P; Brandi R; Robson SC et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Global gene expression analysis of H4T80A mutants vs WT H4 in Saccharomyces cerevisiae

2018 | Other
OTHER-ID:

E-MTAB-7090

Source: check_circle
EMBL-EBI

NAT10 inhibition improves cellular phenotypes of Hutchinson-Gilford progeria syndrome by restoring the Transportin-1 pathway

2018 | Other
OTHER-ID:

E-MTAB-6651

Source: check_circle
EMBL-EBI

SRPK1 maintains acute myeloid leukemia through effects on isoform usage of epigenetic regulators including BRD4.

Nature communications
2018-12 | Journal article
Contributors: Tzelepis K; De Braekeleer E; Aspris D; Barbieri I; Vijayabaskar MS; Liu WH; Gozdecka M; Metzakopian E; Toop HD; Dudek M et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Phosphorylation of Histone H4T80 Triggers DNA Damage Checkpoint Recovery.

Molecular cell
2018-10 | Journal article
Contributors: Millan-Zambrano G; Santos-Rosa H; Puddu F; Robson SC; Jackson SP; Kouzarides T
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Promoter-bound METTL3 maintains myeloid leukaemia by m<sup>6</sup>A-dependent translation control.

Nature
2017-11 | Journal article
Contributors: Barbieri I; Tzelepis K; Pandolfini L; Shi J; Millán-Zambrano G; Robson SC; Aspris D; Migliori V; Bannister AJ; Han N et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

RNA binding by the histone methyltransferases Set1 and Set2.

2017-05 | Journal article
Contributors: Sayou C; Millán-Zambrano G; Santos-Rosa H; Petfalski E; Robson S; Houseley J; Kouzarides T; Tollervey D
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

A Chemical Probe for the ATAD2 Bromodomain.

2016-09 | Journal article
Contributors: Bamborough P; Chung CW; Demont EH; Furze RC; Bannister AJ; Che KH; Diallo H; Douault C; Grandi P; Kouzarides T et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Discovery of I-BRD9, a Selective Cell Active Chemical Probe for Bromodomain Containing Protein 9 Inhibition.

2016-02 | Journal article
Contributors: Theodoulou NH; Bamborough P; Bannister AJ; Becher I; Bit RA; Che KH; Chung CW; Dittmann A; Drewes G; Drewry DH et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Generation of a Selective Small Molecule Inhibitor of the CBP/p300 Bromodomain for Leukemia Therapy.

2015-12 | Journal article
Contributors: Picaud S; Fedorov O; Thanasopoulou A; Leonards K; Jones K; Meier J; Olzscha H; Monteiro O; Martin S; Philpott M et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

The breast cancer oncogene EMSY represses transcription of antimetastatic microRNA miR-31.

2014-03 | Journal article
Contributors: Viré E; Curtis C; Davalos V; Git A; Robson S; Villanueva A; Vidal A; Barbieri I; Aparicio S; Esteller M et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Recurrent mutations, including NPM1c, activate a BRD4-dependent core transcriptional program in acute myeloid leukemia.

2014-02 | Journal article
Contributors: Dawson MA; Gudgin EJ; Horton SJ; Giotopoulos G; Meduri E; Robson S; Cannizzaro E; Osaki H; Wiese M; Putwain S et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

BET protein inhibition shows efficacy against JAK2V617F-driven neoplasms.

2014-01 | Journal article
Contributors: Wyspiańska BS; Bannister AJ; Barbieri I; Nangalia J; Godfrey A; Calero-Nieto FJ; Robson S; Rioja I; Li J; Wiese M et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Glutamine methylation in histone H2A is an RNA-polymerase-I-dedicated modification.

2014-01 | Journal article
Contributors: Tessarz P; Santos-Rosa H; Robson SC; Sylvestersen KB; Nelson CJ; Nielsen ML; Kouzarides T
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Novel loci associated with increased risk of sudden cardiac death in the context of coronary artery disease.

2013 | Journal article
Contributors: Huertas-Vazquez A; Nelson CP; Guo X; Reinier K; Uy-Evanado A; Teodorescu C; Ayala J; Jerger K; Chugh H; WTCCC+ et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells.

2013 | Journal article
Contributors: Castelo-Branco G; Amaral PP; Engström PG; Robson SC; Marques SC; Bertone P; Kouzarides T
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Bayesian refinement of association signals for 14 loci in 3 common diseases.

2012-12 | Journal article
Contributors: Wellcome Trust Case Control Consortium; Maller JB; McVean G; Byrnes J; Vukcevic D; Palin K; Su Z; Howson JM; Auton A; Myers S et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Seven newly identified loci for autoimmune thyroid disease.

2012-12 | Journal article
Contributors: Cooper JD; Simmonds MJ; Walker NM; Burren O; Brand OJ; Guo H; Wallace C; Stevens H; Coleman G; Wellcome Trust Case Control Consortium et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Human RNA methyltransferase BCDIN3D regulates microRNA processing.

2012-10 | Journal article
Contributors: Xhemalce B; Robson SC; Kouzarides T
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Three distinct patterns of histone H3Y41 phosphorylation mark active genes.

2012-09 | Journal article
Contributors: Dawson MA; Foster SD; Bannister AJ; Robson SC; Hannah R; Wang X; Xhemalce B; Wood AD; Green AR; Göttgens B et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia.

2011-10 | Journal article
Contributors: Dawson MA; Prinjha RK; Dittmann A; Giotopoulos G; Bantscheff M; Chan WI; Robson SC; Chung CW; Hopf C; Savitski MM et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Deciphering c-MYC-regulated genes in two distinct tissues.

2011-09 | Journal article
Contributors: Robson SC; Ward L; Brown H; Turner H; Hunter E; Pelengaris S; Khan M
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls.

2010-04 | Journal article
Contributors: Wellcome Trust Case Control Consortium; Craddock N; Hurles ME; Cardin N; Pearson RD; Plagnol V; Robson S; Vukcevic D; Barnes C; Conrad DF et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

Origins and functional impact of copy number variation in the human genome.

2010-04 | Journal article
Contributors: Conrad DF; Pinto D; Redon R; Feuk L; Gokcumen O; Zhang Y; Aerts J; Andrews TD; Barnes C; Campbell P et al.
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central

c-Myc and downstream targets in the pathogenesis and treatment of cancer.

2006-11 | Journal article
Contributors: Robson S; Pelengaris S; Khan M
Source: Self-asserted source
Samuel Charles Robson via Europe PubMed Central