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Institute webpage

Other IDs

Loop profile: 387141
ResearcherID: H-1075-2019

Keywords

Genomics, Metagenomics, Metatranscriptomics, Single Cell Genomics, marine microbiology

Countries

Germany

Activities

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Employment (4)

Karlsruhe Institute of Technology: Karlsruhe, DE

2017-09-01 to present | Research Fellow (Institute for Biological Interfaces 5 (IBG5))
Employment
Source: Self-asserted source
John Vollmers

Leibniz Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH: Braunschweig, DE

2014-09-01 to 2017-09-01 | PostDoc (Junior Research Group Single Cell Genomics)
Employment
Source: Self-asserted source
John Vollmers

University of Münster: Münster, DE

2013-01 to 2013-12 | Research Assistant (Institute for Evolution and Biodiversity)
Employment
Source: Self-asserted source
John Vollmers

Georg-August-Universität Göttingen: Göttingen, DE

2008-01-01 to 2012-12-31 | Research Assistant (Department of Genomic and Applied Microbiology)
Employment
Source: Self-asserted source
John Vollmers

Works (27)

Taxonomic Re-Classification and Expansion of the Phylum Chloroflexota Based on over 5000 Genomes and Metagenome-Assembled Genomes

Microorganisms
2023-10-23 | Journal article
DOI: 10.3390/microorganisms11102612
Contributors: Sandra Wiegand; Morgan Sobol; Luca Kristina Schnepp-Pesch; Geng Yan; Sajid Iqbal; John Vollmers; Jochen A. Müller; Anne-Kristin Kaster
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Midi-metagenomics: A novel approach for cultivation independent microbial genome reconstruction from environmental samples

2023-01-26 | Preprint
DOI: 10.1101/2023.01.26.525644
Contributors: John Vollmers; Maximiano Correa Cassal; Anne-Kristin Kaster
Source: check_circle
Crossref

How clear is our current view on microbial dark matter? (Re-)assessing public MAG & SAG datasets with MDMcleaner

Nucleic Acids Research
2022-07-22 | Journal article
DOI: 10.1093/nar/gkac294
Contributors: John Vollmers; Sandra Wiegand; Florian Lenk; Anne-Kristin Kaster
Source: check_circle
Crossref

Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov.

Microorganisms
2021-07-13 | Journal article
DOI: 10.3390/microorganisms9071494
Contributors: Sandra Wiegand; Patrick Rast; Nicolai Kallscheuer; Mareike Jogler; Anja Heuer; Christian Boedeker; Olga Jeske; Timo Kohn; John Vollmers; Anne-Kristin Kaster et al.
Source: check_circle
Crossref

Comparative Genomics Reveals Prophylactic and Catabolic Capabilities of Actinobacteria within the Fungus-Farming Termite Symbiosis

mSphere
2021-04-28 | Journal article
DOI: 10.1128/mSphere.01233-20
Contributors: Robert Murphy; René Benndorf; Z. Wilhelm de Beer; John Vollmers; Anne-Kristin Kaster; Christine Beemelmanns; Michael Poulsen; Gary Sawers
Source: check_circle
Crossref

Streptomyces smaragdinus sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis

International Journal of Systematic and Evolutionary Microbiology
2020-11-01 | Journal article
DOI: 10.1099/ijsem.0.004478
Contributors: Jan W. Schwitalla; René Benndorf; Karin Martin; John Vollmers; Anne-Kristin Kaster; Z. Wilhelm de Beer; Michael Poulsen; Christine Beemelmanns
Source: check_circle
Crossref

Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis

International Journal of Systematic and Evolutionary Microbiology
2020-10-01 | Journal article
DOI: 10.1099/ijsem.0.004403
Contributors: René Benndorf; Karin Martin; Michelle Küfner; Z. Wilhelm de Beer; John Vollmers; Anne-Kristin Kaster; Christine Beemelmanns
Source: check_circle
Crossref

Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis

International Journal of Systematic and Evolutionary Microbiology
2020-10-01 | Journal article
DOI: 10.1099/ijsem.0.004398
Contributors: René Benndorf; Jan W. Schwitalla; Karin Martin; Z. Wilhelm de Beer; John Vollmers; Anne-Kristin Kaster; Michael Poulsen; Christine Beemelmanns
Source: check_circle
Crossref

A survey of extended-spectrum beta-lactamase-producing Enterobacteriaceae in urban wetlands in southwestern Nigeria as a step towards generating prevalence maps of antimicrobial resistance

PLOS ONE
2020-03-04 | Journal article
DOI: 10.1371/journal.pone.0229451
Contributors: Olawale Olufemi Adelowo; Grzegorz Woźniakowski; Odion Osebhahiemen Ikhimiukor; Camila Knecht; John Vollmers; Mudit Bhatia; Anne-Kirstin Kaster; Jochen A. Müller
Source: check_circle
Crossref

Spirocyclic cladosporicin A and cladosporiumins I and J from a Hydractinia-associated Cladosporium sphaerospermum SW67

Organic Chemistry Frontiers
2019 | Journal article
DOI: 10.1039/c8qo01104d
Part of ISSN: 2052-4129
Source: Self-asserted source
John Vollmers

Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy

Environmental Microbiology
2019-10 | Journal article
DOI: 10.1111/1462-2920.14728
Part of ISSN: 1462-2912
Part of ISSN: 1462-2920
Source: Self-asserted source
John Vollmers

A marine plasmid hitchhiking vast phylogenetic and geographic distances

Proceedings of the National Academy of Sciences
2019-10-08 | Journal article
DOI: 10.1073/pnas.1905878116
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Source: Self-asserted source
John Vollmers

Detection of the carbapenemase gene blaVIM-5 in members of the Pseudomonas putida group isolated from polluted Nigerian wetlands

Scientific Reports
2018-12 | Journal article
DOI: 10.1038/s41598-018-33535-3
Part of ISSN: 2045-2322
Source: Self-asserted source
John Vollmers

The first world swimming championships of roseobacters—Phylogenomic insights into an exceptional motility phenotype

Systematic and Applied Microbiology
2018-11 | Journal article
DOI: 10.1016/j.syapm.2018.08.012
Part of ISSN: 0723-2020
Source: Self-asserted source
John Vollmers

Comparative Genomics and Mutational Analysis Reveals a Novel XoxF-Utilizing Methylotroph in the Roseobacter Group Isolated From the Marine Environment

Frontiers in Microbiology
2018-04-27 | Journal article
DOI: 10.3389/fmicb.2018.00766
Part of ISSN: 1664-302X
Source: Self-asserted source
John Vollmers

Unravelling the Identity, Metabolic Potential and Global Biogeography of the Atmospheric Methane-Oxidizing Upland Soil Cluster α

Environmental Microbiology
2018-03 | Journal article
DOI: 10.1111/1462-2920.14036
Part of ISSN: 1462-2912
Source: Self-asserted source
John Vollmers

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!

2017 | Journal article
PMID: 28099457
Contributors: Vollmers J; Wiegand S; Kaster AK
Source: Self-asserted source
John Vollmers via Europe PubMed Central

No evidence for a bovine mastitis Escherichia coli pathotype

BMC Genomics
2017-12 | Journal article
DOI: 10.1186/s12864-017-3739-x
Contributors: Andreas Leimbach; Anja Poehlein; John Vollmers; Dennis Görlich; Rolf Daniel; Ulrich Dobrindt
Source: check_circle
Crossref

Isolation, Biosynthesis and Chemical Modifications of Rubterolones A-F: Rare Tropolone Alkaloids from Actinomadura sp. 5-2

Chemistry - A European Journal
2017-07-12 | Journal article
DOI: 10.1002/chem.201701005
Part of ISSN: 0947-6539
Source: Self-asserted source
John Vollmers

Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea.

2016 | Journal article
DOI: 10.3389/fmicb.2016.02079
PMID: 28066393
PMC: PMC5177795
Contributors: Kohn T; Heuer A; Jogler M; Vollmers J; Boedeker C; Bunk B; Rast P; Borchert D; Glöckner I; Freese HM et al.
Source: Self-asserted source
John Vollmers via Europe PubMed Central

No evidence for a bovine mastitisEscherichia colipathotype

2016-12-23 | Preprint
DOI: 10.1101/096479
Contributors: Andreas Leimbach; Anja Poehlein; John Vollmers; Dennis Göerlich; Rolf Daniel; Ulrich Dobrindt
Source: check_circle
Crossref

Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea.

2016-10 | Journal article
DOI: 10.1111/1751-7915.12420
PMID: 27748032
Contributors: Song Y; Kaster AK; Vollmers J; Song Y; Davison PA; Frentrup M; Preston GM; Thompson IP; Murrell JC; Yin H et al.
Source: Self-asserted source
John Vollmers via Europe PubMed Central

Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses.

2015-02 | Journal article
DOI: 10.1038/ismej.2014.134
PMID: 25083934
PMC: PMC4303631
Contributors: Voget S; Wemheuer B; Brinkhoff T; Vollmers J; Dietrich S; Giebel HA; Beardsley C; Sardemann C; Bakenhus I; Billerbeck S et al.
Source: Self-asserted source
John Vollmers via Europe PubMed Central

Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin.

2013 | Journal article
DOI: 10.1371/journal.pone.0063422
PMID: 23671678
PMC: PMC3646047
Contributors: Vollmers J; Voget S; Dietrich S; Gollnow K; Smits M; Meyer K; Brinkhoff T; Simon M; Daniel R
Source: Self-asserted source
John Vollmers via Europe PubMed Central

An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis.

2012 | Journal article
DOI: 10.1371/journal.pone.0033439
PMID: 22479398
PMC: PMC3315566
Contributors: Poehlein A; Schmidt S; Kaster AK; Goenrich M; Vollmers J; Thürmer A; Bertsch J; Schuchmann K; Voigt B; Hecker M et al.
Source: Self-asserted source
John Vollmers via Europe PubMed Central

Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria.

2012-06 | Journal article
DOI: 10.1038/ismej.2011.190
PMID: 22189493
PMC: PMC3358034
Contributors: Brinkhoff T; Fischer D; Vollmers J; Voget S; Beardsley C; Thole S; Mussmann M; Kunze B; Wagner-Döbler I; Daniel R et al.
Source: Self-asserted source
John Vollmers via Europe PubMed Central

Diversity and abundance of Gram positive bacteria in a tidal flat ecosystem.

2007-07 | Journal article
DOI: 10.1111/j.1462-2920.2007.01302.x
PMID: 17564614
Contributors: Stevens H; Brinkhoff T; Rink B; Vollmers J; Simon M
Source: Self-asserted source
John Vollmers via Europe PubMed Central
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